mRNA_H-paniculata_contig5163.12490.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5163.12490.1
Unique NamemRNA_H-paniculata_contig5163.12490.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig5163.12490.1 vs. uniprot
Match: D7FKN4_ECTSI (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKN4_ECTSI)

HSP 1 Score: 439 bits (1128), Expect = 8.050e-144
Identity = 231/299 (77.26%), Postives = 251/299 (83.95%), Query Frame = 2 
Query:  128 KPAPLTDLALATPHSPAPIEAKLERGKVQMEAPWVHQDNMG-------LVIETAEEE-------ERRRALAETELQRQKDQEEWDRAFEEELMQTGLPEDVVAACTYQILKGLTYLHENNQLHRDVKPSNILLNARGEVKLTDFGIARELDHAGAMVETVVGTVRYMSPERLHGEAYGQPADVWGLGLVMIECVTQEAPYADGCSQIEILQTLKEHGGDGLLPSGLENRVPLSDAFVEFVSDCLKVAPKERLSTAELLNSRWFVEQGIHGREEAVELMAEYLEGLYGPHAFKFFGEDIA 982
            +P  L++ ALATP +    E  LERG+ Q+EAPW+  +  G       L +E   EE       ERRR  A  EL+RQK+QEEWDRAFEEEL+QTGLPEDVVAAC YQIL GLTYLHE+NQLHRDVKPSNILLNARGEVKLTDFGIARELDHAGAMVETVVGTVRYMSPERLHGEAYG+PADVWGLGLVMIECVTQEAPYADGCSQIEILQTLKEHGG GLLPSG E+RVPLSDAFV FV DCL V P++RLSTAELLNSRWFVEQG+HGRE AVELMAEYLEGLYGPHAFK+FG+  A
Sbjct:  351 EPLMLSEGALATPAAGVK-ETLLERGRGQVEAPWLDDNGDGGAGGRPALRLEQELEEDDRPEAAERRRVEAAAELERQKEQEEWDRAFEEELVQTGLPEDVVAACVYQILGGLTYLHEHNQLHRDVKPSNILLNARGEVKLTDFGIARELDHAGAMVETVVGTVRYMSPERLHGEAYGRPADVWGLGLVMIECVTQEAPYADGCSQIEILQTLKEHGGSGLLPSGTEDRVPLSDAFVGFVGDCLMVNPEDRLSTAELLNSRWFVEQGVHGREAAVELMAEYLEGLYGPHAFKYFGDPAA 648
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BLAST of mRNA_H-paniculata_contig5163.12490.1 vs. uniprot
Match: A0A7S4TA69_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4TA69_9STRA)

HSP 1 Score: 181 bits (459), Expect = 5.890e-50
Identity = 88/194 (45.36%), Postives = 124/194 (63.92%), Query Frame = 2 
Query:  350 EEELMQTGLPEDVVAACTYQILKGLTYLHENNQLHRDVKPSNILLNARGEVKLTDFGIARELDHAGAMVETVVGTVRYMSPERLHGEAYGQPADVWGLGLVMIECVTQEAPYADGCSQIEILQTLKEHGGDGLLPSGLENRVPLSDAFVEFVSDCLKVAPKERLSTAELLNSRWFVEQGIHGREEAVELMAEYL 931
            E  L + GLPE   A+  YQ+L GL YLH  N +HRDVKP N+L+N RGEVKL+DFGIA + +    M  TVVGT RYMSPERL  + YG  +D+W LGLV++EC T ++P+ D  SQ+E+L T++E   D  +P        LS   VE +  CL+ +P+ R+  + L+ S WF + GI   ++A ++M +Y+
Sbjct:   29 ESNLGRNGLPEKATASIAYQMLWGLGYLHHENMIHRDVKPGNVLVNTRGEVKLSDFGIASQREVGQEMNVTVVGTTRYMSPERLRAKPYGSSSDLWSLGLVLLECCTGKSPFEDVTSQVELLLTVEETSADEWIPVDT-----LSPGLVEILKSCLQQSPERRIPASILIGSPWFGDMGIESLDDAADVMKQYI 217
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BLAST of mRNA_H-paniculata_contig5163.12490.1 vs. uniprot
Match: A0A7S3UWL4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWL4_HETAK)

HSP 1 Score: 177 bits (449), Expect = 1.330e-47
Identity = 92/187 (49.20%), Postives = 119/187 (63.64%), Query Frame = 2 
Query:  374 LPEDVVAACTYQILKGLTYLHENNQLHRDVKPSNILLNARGEVKLTDFGIARELDHAGAMVETVVGTVRYMSPERLHGEAYGQPADVWGLGLVMIECVTQEAPYADGCSQIEILQTLKEHGGDGLLPSGLENRVPLSDAFVEFVSDCLKVAPKERLSTAELLNSRWFVEQGIHGREEAVELMAEYLE 934
            +PE V+AA TYQIL GL YLH   +LHRD+KPSNIL N  GE+KLTDFGIARELD +  M  T+VGT RYMSP RL G+ YG P+D+W LG+++IEC  +  P+    +QIE+ Q L+E   D +LP         SD F E V  CL  AP++R    +LL   W  + G+   +EAV +   +LE
Sbjct:   73 MPEKVLAAITYQILWGLGYLHYEKRLHRDIKPSNILANNSGEIKLTDFGIARELDDSN-MASTIVGTFRYMSPGRLRGDPYGPPSDIWSLGVMLIECAARSLPFPSSNTQIELAQALEELEIDEMLPPDF------SDEFCEMVRLCLAPAPEDRPRAEQLLEGPWLEKFGVADLDEAVAVTRTWLE 252
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BLAST of mRNA_H-paniculata_contig5163.12490.1 vs. uniprot
Match: A0A7S1Z3W8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z3W8_9STRA)

HSP 1 Score: 175 bits (444), Expect = 2.680e-46
Identity = 86/189 (45.50%), Postives = 120/189 (63.49%), Query Frame = 2 
Query:  350 EEELMQTGLPEDVVAACTYQILKGLTYLHENNQLHRDVKPSNILLNARGEVKLTDFGIARELDHAGAMVETVVGTVRYMSPERLHGEAYGQPADVWGLGLVMIECVTQEAPYADGCSQIEILQTLKEHGGDGLLPSGLENRVPLSDAFVEFVSDCLKVAPKERLSTAELLNSRWFVEQGIHGREEAVEL 916
            E  L + GLPE   A+  YQ+L GL YLH  N +HRDVKP N+L+N RGEVKL+DFGIA + +    M  TVVGT RYMSPERL  + YG  +D+W LGLV++EC T ++P+ D  SQ+E+L T++E   D  +P        LS   VE +  CL+ +P+ R+  + L+ S WF + GI   ++A ++
Sbjct:  165 ESNLGRNGLPEKATASIAYQMLWGLGYLHHENMIHRDVKPGNVLVNTRGEVKLSDFGIASQREVGQEMNVTVVGTTRYMSPERLRAKPYGSSSDLWSLGLVLLECCTGKSPFEDVTSQVELLLTVEETSADEWIPVDT-----LSPGLVEILKSCLQQSPERRIPASILIGSPWFGDMGIESLDDAADV 348
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BLAST of mRNA_H-paniculata_contig5163.12490.1 vs. uniprot
Match: A0A7S2UX05_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UX05_9STRA)

HSP 1 Score: 175 bits (444), Expect = 3.990e-46
Identity = 87/187 (46.52%), Postives = 121/187 (64.71%), Query Frame = 2 
Query:  374 LPEDVVAACTYQILKGLTYLHENNQLHRDVKPSNILLNARGEVKLTDFGIARELDHAGAMVETVVGTVRYMSPERLHGEAYGQPADVWGLGLVMIECVTQEAPYADGCSQIEILQTLKEHGGDGLLPSGLENRVPLSDAFVEFVSDCLKVAPKERLSTAELLNSRWFVEQGIHGREEAVELMAEYLE 934
            L E  +AA TYQIL GL YLH   +LHRD+KPSNIL+N  G+VKLTDFGIARE+D    M  T++GT +YMSPERL G+AY    D+W LG+V+IE VTQ  P+ +  +Q+++ Q L E   + L+P+G       S    EF+  CL+  P +RLST +L    W  E GI   ++A+ + +E+++
Sbjct:  146 LDERYMAAVTYQILWGLGYLHYERRLHRDIKPSNILVNQEGKVKLTDFGIAREVDEDSKMATTMIGTYKYMSPERLKGDAYDSSGDIWSLGIVLIEMVTQRTPFPNVDNQLDMAQELLEMKNEDLIPTG----EGCSSELCEFIQACLQRNPADRLSTEQLFKLPWLDEHGIDDLDKAISVYSEWMD 328
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BLAST of mRNA_H-paniculata_contig5163.12490.1 vs. uniprot
Match: A0A835YQN1_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQN1_9STRA)

HSP 1 Score: 170 bits (431), Expect = 1.980e-43
Identity = 83/186 (44.62%), Postives = 122/186 (65.59%), Query Frame = 2 
Query:  374 LPEDVVAACTYQILKGLTYLHENNQLHRDVKPSNILLNARGEVKLTDFGIARELDHAGAMVETVVGTVRYMSPERLHGEAYGQPADVWGLGLVMIECVTQEAPYADGCSQIEILQTLKEHGGDGLLPSGLENRVPLSDAFVEFVSDCLKVAPKERLSTAELLNSRWFVEQGIHGREEAVELMAEYL 931
            +PE VVA+  +Q L+GL +LHE   +HRD+KPSN+L+N++GE+KLTDFGI +EL    A ++ V GTV+YM+PERL GE YG  AD+W  GLV++EC +Q  P+ +   Q+E+LQ L+E G  GL+ +G   R  LS  FV+ ++  L +   +R      L   WFV QG+  +  A+ +++ YL
Sbjct:  163 MPERVVASIAFQALQGLAHLHERCCMHRDIKPSNLLINSKGELKLTDFGILKELSSKHATIDAVTGTVKYMAPERLRGEPYGLAADIWSFGLVLLECASQH-PFWNSSGQVEMLQLLEEQGSKGLISAG---RGHLSKRFVDVIARTLDMDATKRADAEAALRLPWFVVQGVSSQRSAMTVLSLYL 344
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BLAST of mRNA_H-paniculata_contig5163.12490.1 vs. uniprot
Match: A0A835YV97_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV97_9STRA)

HSP 1 Score: 169 bits (428), Expect = 4.450e-43
Identity = 88/186 (47.31%), Postives = 123/186 (66.13%), Query Frame = 2 
Query:  374 LPEDVVAACTYQILKGLTYLHENNQLHRDVKPSNILLNARGEVKLTDFGIARELDHAGAMVETVVGTVRYMSPERLHGEAYGQPADVWGLGLVMIECVTQEAPYADGCSQIEILQTLKEHGGDGLLPSGLENRVPLSDAFVEFVSDCLKVAPKERLSTAELLNSRWFVEQGIHGREEAVELMAEYL 931
            +PE+V+AA  YQ+L GL+YLH   +LHRD+KPSNIL+N +GEV+LTDFGIA +L    A+  TVVGT RYMSPERL G+ YG  ADVW LGLV++E  T + P++   +Q+++ Q L+E   +  +P G       S++  E +S CL   P  RL  A L +S  F E GI   +EAV+++ E++
Sbjct:  136 MPENVIAAIFYQVLWGLSYLHYERKLHRDIKPSNILMNRKGEVRLTDFGIATDLKE-DALASTVVGTFRYMSPERLRGDEYGAAADVWSLGLVILELATGQVPFSTCNNQLDLNQLLEEVKVEIFIPWGQR-----SESLCEVLSACLHTEPNLRLPMAVLFDSPLFAETGIFSLDEAVDILREWI 315
[Close]
BLAST of mRNA_H-paniculata_contig5163.12490.1 vs. uniprot
Match: A0A0W8D267_PHYNI (Protein kinase domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=A0A0W8D267_PHYNI)

HSP 1 Score: 160 bits (405), Expect = 1.470e-40
Identity = 81/167 (48.50%), Postives = 107/167 (64.07%), Query Frame = 2 
Query:  374 LPEDVVAACTYQILKGLTYLHENNQLHRDVKPSNILLNARGEVKLTDFGIARELDHAGAMVETVVGTVRYMSPERLHGEAYGQPADVWGLGLVMIECVTQEAPYADGCSQIEILQTLKEHGGDGLLPSGLENRVPLSDAFVEFVSDCLKVAPKERLSTAELLNSRWF 874
            +PE V+AA   QIL GL +L     +HRD+KP NIL+   G VKLTDFG+AREL  + +M +T VGT +YM+PER+  E Y   +D+W LGLV+IEC TQ  PYA+  S I+++Q++ E   +  LP    N  P +  F +F+  CLK  P ER S  ELLNSR F
Sbjct:  142 VPERVIAAIAMQILTGLAHLQLVRHVHRDIKPQNILVQQDGAVKLTDFGLARELSSSTSMAQTFVGTFKYMAPERVQNEPYDYKSDIWSLGLVLIECATQTFPYANARSYIDVVQSIVE-SPEPSLPEDDANGKPFTPEFHDFIGRCLKKEPSERASVEELLNSRGF 307
[Close]
BLAST of mRNA_H-paniculata_contig5163.12490.1 vs. uniprot
Match: A0A7S1UEJ8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UEJ8_9STRA)

HSP 1 Score: 162 bits (409), Expect = 1.630e-40
Identity = 81/186 (43.55%), Postives = 123/186 (66.13%), Query Frame = 2 
Query:  374 LPEDVVAACTYQILKGLTYLHENNQLHRDVKPSNILLNARGEVKLTDFGIARELDHAGAMVETVVGTVRYMSPERLHGEAYGQPADVWGLGLVMIECVTQEAPYADGCSQIEILQTLKEHGGDGLLPSGLENRVPLSDAFVEFVSDCLKVAPKERLSTAELLNSRWFVEQGIHGREEAVELMAEYL 931
            +PE+++A+  YQ+L GL +L  +NQLHRDVKP N+L+N RGE KL DFGIAR L+  G +  TV GT +YMSPERL+GE Y   +DVW +G++++E   +  P+ D  +QIE++Q L+E   + ++ S       LS AF +F+  C+ +  +ERL   +LL+S  F E GIH  + A +++A ++
Sbjct:  168 IPENMLASLAYQMLWGLAFLQHDNQLHRDVKPGNVLVNRRGEAKLGDFGIARRLEENG-LANTVTGTFKYMSPERLNGETYTYNSDVWSVGVLLLEAARKRYPFGDCHNQIELVQGLQESDTEDVIRS-----CDLSAAFGDFLRGCMVMDKRERLDAEQLLDSPVFAEYGIHDYDSAAKVLAAWV 347
[Close]
BLAST of mRNA_H-paniculata_contig5163.12490.1 vs. uniprot
Match: G4ZEL2_PHYSP (Protein kinase domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4ZEL2_PHYSP)

HSP 1 Score: 161 bits (408), Expect = 1.630e-40
Identity = 89/216 (41.20%), Postives = 122/216 (56.48%), Query Frame = 2 
Query:  374 LPEDVVAACTYQILKGLTYLHENNQLHRDVKPSNILLNARGEVKLTDFGIARELDHAGAMVETVVGTVRYMSPERLHGEAYGQPADVWGLGLVMIECVTQEAPYADGCSQIEILQTLKEHGGDGLLPSGLENRVPLSDAFVEFVSDCLKVAPKERLSTAELLNSRWFVEQGIHGREEAVELMAEYLEGLYGPHAFKFFGEDIADVTTSEMATQQAQ 1021
            +PE VVAA   Q+L GL +L     +HRD+KP NIL+   G VKLTDFG+AREL  + +M +T VGT +YM+PER+  E Y   +DVW +GLV+IEC TQ  PYA+  S I+++Q++ E   +  LP    N  P +  F EF+  CLK  P ER S  ELL S W         E  ++  A +L+ L+         ED ++   S    Q A+
Sbjct:  184 VPERVVAAIAMQVLTGLAHLKRVRHVHRDIKPQNILVQQDGSVKLTDFGLARELCSSTSMAQTFVGTFKYMAPERVQNEPYDYKSDVWSVGLVLIECATQTFPYANARSYIDVVQSIVE-SPEPRLPEVDGNGEPFTPEFHEFIGRCLKKEPSERASVEELLASPWLQLHNATSTERCMQRCATWLQKLH------LVTEDASEAKESHGQRQDAK 392
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5163.12490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKN4_ECTSI8.050e-14477.26Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A7S4TA69_9STRA5.890e-5045.36Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S3UWL4_HETAK1.330e-4749.20Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1Z3W8_9STRA2.680e-4645.50Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S2UX05_9STRA3.990e-4646.52Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835YQN1_9STRA1.980e-4344.62Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A835YV97_9STRA4.450e-4347.31Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A0W8D267_PHYNI1.470e-4048.50Protein kinase domain-containing protein n=8 Tax=P... [more]
A0A7S1UEJ8_9STRA1.630e-4043.55Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
G4ZEL2_PHYSP1.630e-4041.20Protein kinase domain-containing protein n=4 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5163contigH-paniculata_contig5163:3457..11942 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score424.5
Seed ortholog evalue3.8e-116
Seed eggNOG ortholog2880.D7FKN4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.MAP kinase kinase activity
EggNOG OGsKOG0581@1,KOG0581@2759
Ec32 ortholog descriptionProtein kinase-like domain
Ec32 orthologEc-09_000880.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size1685
Cds size819
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5163.12490.1prot_H-paniculata_contig5163.12490.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5163 4109..11728 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930509.0085354-UTR-H-paniculata_contig5163:3456..41081622930509.0085354-UTR-H-paniculata_contig5163:3456..4108Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5163 3457..4108 -
1691481324.392226-UTR-H-paniculata_contig5163:3456..41081691481324.392226-UTR-H-paniculata_contig5163:3456..4108Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5163 3457..4108 -
1622930509.128635-UTR-H-paniculata_contig5163:11728..119421622930509.128635-UTR-H-paniculata_contig5163:11728..11942Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5163 11729..11942 -
1691481324.4939678-UTR-H-paniculata_contig5163:11728..119421691481324.4939678-UTR-H-paniculata_contig5163:11728..11942Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5163 11729..11942 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930509.0193233-CDS-H-paniculata_contig5163:4108..43091622930509.0193233-CDS-H-paniculata_contig5163:4108..4309Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5163 4109..4309 -
1691481324.408163-CDS-H-paniculata_contig5163:4108..43091691481324.408163-CDS-H-paniculata_contig5163:4108..4309Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5163 4109..4309 -
1622930509.0323522-CDS-H-paniculata_contig5163:6672..68311622930509.0323522-CDS-H-paniculata_contig5163:6672..6831Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5163 6673..6831 -
1691481324.4222772-CDS-H-paniculata_contig5163:6672..68311691481324.4222772-CDS-H-paniculata_contig5163:6672..6831Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5163 6673..6831 -
1622930509.0445452-CDS-H-paniculata_contig5163:7454..76281622930509.0445452-CDS-H-paniculata_contig5163:7454..7628Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5163 7455..7628 -
1691481324.4378002-CDS-H-paniculata_contig5163:7454..76281691481324.4378002-CDS-H-paniculata_contig5163:7454..7628Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5163 7455..7628 -
1622930509.0665197-CDS-H-paniculata_contig5163:8587..86681622930509.0665197-CDS-H-paniculata_contig5163:8587..8668Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5163 8588..8668 -
1691481324.4547632-CDS-H-paniculata_contig5163:8587..86681691481324.4547632-CDS-H-paniculata_contig5163:8587..8668Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5163 8588..8668 -
1622930509.0840938-CDS-H-paniculata_contig5163:10149..103051622930509.0840938-CDS-H-paniculata_contig5163:10149..10305Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5163 10150..10305 -
1691481324.4651117-CDS-H-paniculata_contig5163:10149..103051691481324.4651117-CDS-H-paniculata_contig5163:10149..10305Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5163 10150..10305 -
1622930509.1017928-CDS-H-paniculata_contig5163:11680..117281622930509.1017928-CDS-H-paniculata_contig5163:11680..11728Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5163 11681..11728 -
1691481324.4765537-CDS-H-paniculata_contig5163:11680..117281691481324.4765537-CDS-H-paniculata_contig5163:11680..11728Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5163 11681..11728 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5163.12490.1

>prot_H-paniculata_contig5163.12490.1 ID=prot_H-paniculata_contig5163.12490.1|Name=mRNA_H-paniculata_contig5163.12490.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=273bp
MEAPWVHQDNMGLVIETAEEEERRRALAETELQRQKDQEEWDRAFEEELM
QTGLPEDVVAACTYQILKGLTYLHENNQLHRDVKPSNILLNARGEVKLTD
FGIARELDHAGAMVETVVGTVRYMSPERLHGEAYGQPADVWGLGLVMIEC
VTQEAPYADGCSQIEILQTLKEHGGDGLLPSGLENRVPLSDAFVEFVSDC
LKVAPKERLSTAELLNSRWFVEQGIHGREEAVELMAEYLEGLYGPHAFKF
FGEDIADVTTSEMATQQAQLQY*
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mRNA from alignment at H-paniculata_contig5163:3457..11942-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5163.12490.1 ID=mRNA_H-paniculata_contig5163.12490.1|Name=mRNA_H-paniculata_contig5163.12490.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8486bp|location=Sequence derived from alignment at H-paniculata_contig5163:3457..11942- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGACGCTGGCCGCGCGGGGGGTGGCGGTGGGCTGCACTTGGCTGGGGGGA
GTGCATCCGCTCCCAATCGGATTTTGGTGACGAATTTGACAGAGTTGGAG
GCTTCTCCGACTCCCGCGTACTCGGGGAAGCCGGCGCCTTTAACCGATCT
AGCGCTGGCGACGCCGCACTCTCCTGCACCGATCGAGGCGAAACTGGAGC
GGGGCAAGGTGCAGATGGAGGCGCCGTGGGTCCATCAGGATAATATGGGG
TTGGTGATCGAGGTGAACATGTTGAATGGAGCGAAGAGATTGGGGGCGGT
AACCATTTGCCACATGTAGTTGTACGAACTGCTCGCCAACACTCGCAAGG
TCGCCACAAAGGAGAAAGAACCCCTCTGTTCCTTGAGTGTCGCGCTTTTC
CCTGCTCTAGTCAGAATTTTGCTCTTTTGTATCTCGATTACACTCTCATC
GAGTTTCGTAGTCTTCGGACCATTGGAAGATCTTCGAAATATCGAACTTC
CCGCGATCAAGCTCTGTCAGCTGCTCCAAGGACAGGGCCGAGTGAGGTCC
AACAAAATACGTATTTACGAAGGCATCGCCTCTTGAGCTCATGACGATGA
CATCCAGCCTAGCGTATGAACAGAAACGTTCAAAGGAACACGATAAGGGC
GTAGCTGTTGCTACAATTTCCAATAGTACAGTCCTGGAAACGAAGTGTAA
GTACACATCATTCGGTTATCGTGTCATGGAGAAGTGTGGATCGTTGAAAC
GCTGTCGTAGTGCGTACTGGAATCGTCAACCACGGTATTCTGTTCTTTTT
TATTTGCTTCAGCATACTGTAAAAAACACCAGCTTTTCTTCCATATTTTG
CCTGGTTAGTTACCCCCGTGGGTAGTAGTACAGTACAGTTCTGGGGAATG
TCTTTGAACGTATGCTCATGGGCAGGCACTAAGGGTGTGGGCGCGTTTCT
TCTTTATGCTGCTGCTGCGGCTGCTTGTGGTTGTTCATGGCCGCTGGTAT
GTTTGTTTGTTAGTGTCTTTTGGTGGGTGAGAGACGTTGGCGGCGATTAT
TTCTTGTTGAAATTGTTTCGATCCACGCCACCCACTATCGCTTCGGGGTG
GATCATTACCTTCGAATCGAGCTTATTCAACATGTTGTTGGTAAAAGCGC
CGAAGATTACTGGAAAAAACTGAGCCAAGTTGACGAAATGCTAGAGACAA
TGTGACCTCATAGGAAGGGTGTTTGATGCTGTGCGTCGTGCTACCCCACC
ACTTCCACTCCGACGTGGTCTAATTTTGCTGATATGTATACAGAAGTGAA
GTAGGAGGTGAGCTGTATAACCTCAATGTGGATATGGTGAAGTCCTTATA
TGAGTGTTTTAGAGCTATACACTGTGGCAACTGAACTGACTTCTGAAGGA
GATCTTTCATTTCTGTGAGGTGTTTACGTGCAAGTCATGCCATGCCTTCG
CACAGTTCACGCCTCCCCTCCCTCTTCTCCTCTATCGTCGCACGACTCGT
GCTCCCTTAATGTTCGCCGACTGAGCTCATTTGCTCCACCTACTATTTAG
CCCATCTACTTGACTCACTTCATCATCTACTTGCTTATTTGGCTGCGTTT
ATTTGATTGGTGACTTGTTTTGATTTCCTTCCGCAAGACTGCGGAGGAAG
AGGAAAGGCGAAGAGCGTTGGCCGAAACTGAGTTGCAACGGCAAAAAGAT
CAGGAGGAGTGGGACAGGGCGTTCGAGGAGGAGCTGATGCAAACGGGTCT
GCCGGAAGATGTAGTGGCAGCGTGTACTTACCAAATACTAAAGGTGAGTC
GTGGTTGGTGGTGATGGAAGAGACAACCGAGACAGTGGGACTTGGTGGAT
GAGATGTTTGTCTGCTTCCAACCTTTTAACCCCAGGATGCAGTATCACAA
AAGAAAAAATGGGATCGTTGATACAGCACCCACTGTGGGGCCTTTTCCTC
GCTGCGTGCGTATCAGTAAGTGAGTCAAGCACGGATTTGTCAACGCGTTG
GTGTGGAGTTATACATCCGTTCCGTTCAGCATGAAGAGCTGGCTGTTCAC
ACTCCTCCGTAAAATAGTACGAATCCATAGATGAAGATGTGGATACCGAG
ATGTCTGGAAGCATGTGGAGAGAACGGTGTATTGTTGTGTTGTACGGTGT
ACTTGCCGTGCGCAGATAGCTAGCTGCCTCGTGGGTAATCGAGAAGAGAC
GCGGTTGAAAGAGAGTAGACGATGTGGCCTACAAACTCGCACGCCCCCCC
TCCGTCTTCTTATGTCTTGTCCTACCTTCCCAGTACGTTTGTTGCTGTTT
CTCCGTCGTCATCCTCTAGAAGCGCCACGTCGTCATCCTACTCTCTTCCG
AATAACCCGATGCGTTCATTCATTGCTCTGTCCCCAACGTCATCCTCCTG
GCGGGTCCTGTCATCTTGATACTCCTCCCTCGAATATATTGATGTTTTAA
CTGCAGTAGCTACGTCACTGTCGTTTTCCTTTACAAACACGCAATTATCT
TTCGAAATCGCTTGCGGATGCGCTTCGTCTACTATTGTGTGCCCACGACC
TTTCTGTGCAAAGGCTCCTTTTTTTTTTCTTTTTTTTTTTCAATCGGAAG
ACCAGAGCGACTTTCGCAAAGGAAGACCACGGGGACATACCTGTCGGGTG
CATCGGGATATTCGGGGGAAGGTTCTTGGAAACCGTGTGTGTTTGAAAGG
AAAGGCGGCGGACACAAGAATGGACGTTTCTGTATACTGAGGAGTGATCA
GAAAACAAGGGACACATGTACAGGATGACGGCACAGACTCAGAAGTCGTT
GCGACGGACGAATCCGATGCTTGTGAGGGCGGGAGCTCAGCGCAGTTGTG
TGCCGAGAGTTACATCTGTCAAACTTCGCGATGTTTGTGTTCTAAATGTT
TTTGGTTCGAGCCTGTTGCGACATTCCTAAATTACTAGCAGCGAGATATC
CATCTGATCCTTCTTAGCATGGTGAAAACCCGTTCCAGGTGAGATAATGC
ACCGCCAAGCTATGTTAACTGTACGCTGCTTCTAAAGTGGATGACTACAA
AACAGGACGTAATTTGAAGGTTTCGACGGTGATATTCCAACAATATGTTC
GTGTTCGTGGATCCCGTTTTCACTTTCATGATCCTGTCACCGCGCGAGTT
ACAATATACAGGTGTACATGTTAAGAAAACGGTAATACTCGTTTCATAAT
ATGCTTCAACCTCACTGATGTTACGTGTTATTCCCGCTACCCCTCCATCC
ACGGGCGCGCGCGGCATGAGACAGGGACTGACATATCTCCACGAGAACAA
CCAGTTGCACCGGGATGTAAAGCCGAGCAACATTCTTCTCAACGCAAGAG
GAGAGGTGAGAGTACGACCGCCAGCGCAGAGGTGAAGACCGGGTGGTAAT
ATTTGGTTGTCTCCTGGTCCCTGGTCATCACTTCGTCATTTGTATTTCTT
TTTATCATGCCTCGTTTTTCCCAGTGCTATGATGACTGTGCGTGTATGTG
GTGCCTTCAGTCCCGGCGATTTAGCCCCACCCGGGAGCCTTTAAACTCTT
TTATCCGTCGTGCGCGGCTTGTTCATAATTTGACTATTACGAACGAAGCC
AGTGTCTGCTCGGTCTCTCTACTCTAGATGAAAGATAAAAGGCCACGAAT
GCTCAAGAAACGACCCCTTTTTCCACCTGAAGTATAATGACCAGCTGCCT
AGAGCTGGCTAAGCATTCTGCTGACGTGTTCATTATTCAAGTGTGCTCGT
TAGCAAAATCTATATGCTGGTCGCTATCAAGTCCGGATACTCGAGGATGA
AATGAGGCTGAGGCTGTATGGTTGTTCCGGACCGGGGTAGTACCGGACAG
CACAGTGCGATAAGATTGTGTGTACATTGGCAATACCCATGCCGTAGTTT
AGAGGATGAATCGTCTTCGTTGTTGACTACGTCACTCAACTGACTGATGT
CCCGAAATGTACAGGCGATCGGTAGTTATAACACCGAAAGCTCATGTGGT
TGAATGTATGCCGTCGAGAGGCGTGTGCCATTAGATACCCATGCCCTCCT
TCTGGAGTATGGCAGTGCAGGTAGGGTCCTGCTTCTCGAGCCGATCGGGT
TTGAGTAAATGTCGTGTCAAATGGGATGTGACAGCATGCCGTGTCGACAA
CAGAAAACAGCTCTATCGGTATGTGAAGGCTGACAAATGAAATGTGCATC
TGTGTCTGGTGTCCACTCCCAGTTAACGACATCTACATACGTGATAGATG
CAAGTGACGACCATCTTTGCCCCTGTCCTGTTGCCGGCCGATGCCAACTC
GCAATCCTGACCAGGTGAAATTGACAGATTTTGGGATAGCTCGCGAACTT
GACCACGCGGGAGCGATGGTGGAGACAGTGGTGGGGACCGTGCGTTACAT
GTCTCCGGAGCGATTGCATGGCGAGGCGTACGGGCAGCCGGCGGACGTAT
GGGGTTTAGGGTTGGTTATGATCGAATGCGTTACTCAGGTGGGTGGGTGA
AAGGATGTGTGGCTGTGGGGTTTTGTAACACAAGGATATATCAGGTATCA
AGGTTTCCCAACGTTGATTAACCCCTTCGGCGGGCAACTTGACAAAAACA
ACTTAATGCGCATCTTCACGAATGAGCCACTGCTCTTGTCAACCAAAGGC
ACTATGCCGACGAGTGAATCACTGCGCTTTTCAGATGGGAATAATCAACC
TGTATAATCGACTTTATGGCCATTTTTCGATAATATTACGCCATATTGCA
TCGACAAAAAGTGTCCTCAAAAAGAGATCCCAGAAAACAGAATTATGAGG
TGTAAGCCCGTCAAGGATCAAAAACGTTTTTTTTTTTTTTTCATGTGTTC
TGTAGCACGTTGGGCCTCGTTTCGTGTGGCGTCGGGATCATAGTGGACTC
TAAACTTCATCTCATGGGTTCGACCGGCTCAAGGAATCATTCCGGGTAAT
GTGGCGTTGAGTCTCAATTTTCTATTTAACTCAGTCATTTTAGAAACACT
TGTACCAGGCTATAGTGTCTTCTTTTGCCACATTTTACCCATAAATCTTC
ACCCCCTCTTCGCGTACATTTCTCTGTCTTTCTGTTTCGGTGGCAATCAA
TCGGAGACCAGGAGGCTCCATATGCCGACGGCTGCAGTCAGATAGAAATA
CTTCAGACCTTGAAGGAGCATGGGGGCGACGGCTTATTGCCATCGGGCTT
GGAGAACCGAGTGCCGCTAAGCGACGCGTTCGTTGAGTTCGTGTCGGACT
GTCTGAAGGTTGCGCCAAAGGTGATGAGGAGGGCATGTTAAAAATGAACG
CTGGAGGCGGCGATTGTCTTACAATGGGCGTTCGCTTCCCTCATACAGAA
ATTGTTACGGCGTCGACTTGTTTTTGCTGGGTACCCGTATGTTCTATTAA
TTAATAACATCACGCACGCCGATGGGAAGAGCCCTCTCTCGGTCGTGACA
TGTTTGGTCGAGCCTCCCCGCGCCTCTTGGTTAGCCTCGGGCCACAACAT
ACTCGATGCAGCTCAACACCGGGTACTCTAGCAAAGGGAACTTGCCCTCA
TTGTCCTTCTCGCTATGGATTCACGGGATCTTGGGCCTCATTGGTGTGAG
GTGGGGTTTACACTTGCTCCGGACATTTAAAGAGAAGTTTTGTGAAGTTT
TTGGTGCAGCATTAATGTAACAAAATATGGAGCACATGGCACCACGACCA
AGTAGTTTTCTATGTTTAATTGGGGAAAATTTGGTGTTTTTCATGAAAAG
GAGGGTGTGAGATGGGAGGATTATTTATTGGAAGAAACAAACGCCCTTTT
TCGGGATAAAATCCCAGCGATTTTCGGAGAAATCGTTGCGTCTTACTGAC
GGCATAAAGTTTGAGAACCAAGTCCTTGCTTGTGGCTTGGCTAACCGGGT
TCGAGTGGTGGGTTGTGTATTTATTTAAAGATGACCGGCGTGTGTCAGCG
CTGTCTGTGGCCACGCGACCAATGGTTGACACGTTGTTCTAATGCTGCCA
AATGTTTCAAAGATTTTGTCGCGAGTAGATTGATGGTTGATAGTTGATGA
CAGTTCAATCCTTGGTCTCATGGTTGTAGGAGTGGCTGCGGCGGCCGAAG
CAGCCACTGAACGCTCTCTCAACGACGTTTTGCTCCTGGGAGACATTGTT
ACATGTTTGTTTGTCACGCGGTTGATTCTTCACGACATGAAATAAAGCTG
GCAAGTTGAGGAAGGCCACAAGGCATGGGCAAAAAATGTCGTATGACGCC
CCCCAAATATTTTCCTCAGCCATATGTTGATTGGTTGATCGATACCCGTA
ACTTTTGCGGTTATGCCTCTAGTTACGACGTGTAACTCTTTACGCGGTTA
CCATAACATTTGCCGATATCAACACGCTTAAGTAAGTTAAGCCAATGCTA
TGGTTGCTTTCCCAAGAATACCAAATTTTTCCGATTTCCGAATTTCCGTT
TTAACCATGGATGGAAAGTGGAAAAATTTCGTTATGAAAGGCGGCAGTTA
ACACCTTAACTCCTGGAGAGGTCCAGTGTGACATTTTTGTGCACGAAATT
TTGCACTTCCGATGTGTCTCCAAAGGGGGGGTGGGGAGGGGGTTTGGGGT
GGAGGAAGTTTTTGTTGGGACGGGGAGACATGATACCGATGTACGACGAG
ATGAACATGATTGTAGGGTATTGAATGATGAACGTACTACGAAACGAATA
GATAGCACCAAGGGATGCTAGGAACGGAAGGGGTCAAAGGATACCTCTTT
TTATTTCAAACCATTGTACATTTGCGACTGGTTTGCTACACAGCTGCAAG
GCCGTGTACTTGACAAGTTATGTAGGGGTAGTACAGCTGATAGACTACAG
TACACATTGATTCCATGGAGCGTCGGCAGCCGGGTGGACAGCGCAAGCAG
CATGATACAGTCAGTAAAGTTGCGCGCGGTCACGGAAGAAACAGACAAGT
AAAATGCATGCGCCAGTTGGTGTACTGCAGCACCATATATATATCTACCT
GGTGAACGGTAACAGCAACACAATGAAGAGGGGGTGAGAGGTTGGCAGGC
ACCAGCATCTGCCGAGAATTCCCTAGCGACGGATAGCCGCTGCGTGTATG
GCGTCCTGTTAGACGTGACGATACCCACCGACACAGCAGTTGGTAGGTCG
TCGCAGTCGTCGCACTCAAAACATGATAACACGAGTGATTGGATGATCGG
TAGTTCGGCGTTGTGCTTCCTGAAACAGAGTTGTCCCTTCTGTCACTTTT
TTTTTTTTTTTTCTAGGAGTCAAAGGGTTGACTCAGAAGCTCGGAAATCG
GGAAATTACCAAATACGGATTTTTTTTCGAACAGAGCTATAATGAGAAGA
TAATATGTGTCAAATGGGAGGCGTGAAAATTTCGACAGAGCTCTTTTTTT
CTTTTTTTTTTTCCTTCACTTTTGAAGCGAAAAGTTGAATTCTTCAGGTA
AATGTTCGAGTGGTGTCTCAAGTGGTGTTGTTTAACGCACTGCTCAACAC
TACGCAAGGCTGATAATTTTTTTATTTGGAGGCATTACAACTTTGATGTG
TCGCACCCCCCGAGCCTCCCTGCAACCCTACCGCCCCGATATATCCCCGG
TGGTGATGTGAATTCGTCGTCCTCTCGCAACAGGAACGGCTCTCAACGGC
AGAGTTATTGAACTCGCGCTGGTTTGTTGAGCAAGGGATACACGGCAGGG
AGGAGGCTGTCGAGCTGATGGCTGAGTACTTGGAGGGTCTGTACGGCCCA
CACGCTTTCAAGTTCTTTGGCGAGGACATTGCCGACGTCACCACATCCGA
AATGGCGACGCAACAAGCTCAGCTGCAATATTGACCGCGCCTCCCGATGC
GATGCAATGCGACCTGGTATAAATGTGTGTAGTTTTTTTTTACTGTATGT
TGTTGGGGTATTTGTCGAAAGAAGAGGGAACTCGCAGCGTTTTACAGTCC
AGTGTTTTTTGGGGTTGTCTTGGGGGGTTGATTCATACACGCAAGTTTTG
GCCACCTCAACTATGTACCCCATGTGTTGAGCCGGAGATTGGAAGTGTGC
CGCCAATTCTATTGAACCTTGGAAAAACACCAAAGTTAAAAAAAATCACC
ATGCGCGTGCCAAGCAAGTGACAAAATCATGACCGGGGGGGGGTAAGTGG
TGTGGATTGCAGCTGTGTGTTGCGACCAAGCACGGGCGATTTTCTGGTAA
GGAAAATGGGCGAGTCTCGATACGTTGACGTGTTTCTTTTTCATTCTTAT
ACATCGTCTTTTTATGGGATTCGTTGCGGAAGAAAGAAAGAAAGAAAGAA
AGAAAGAGGCTCGCTTCGCCATATGTTTCTTTTGGTGGTATCCTTGTCGG
AGAAAACGAAAACATCTGGAGCTCCCATCACCCGGCCATCCCCGCCAGTT
AGTTTTAGCGGTGTTGCTTTCTGCAGCCTTTTTTTTTTTTTTTTTTTGCT
CTCATACAATCAAGTCCCTTCGTTCAGTAAGTACAT
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Coding sequence (CDS) from alignment at H-paniculata_contig5163:3457..11942-

>mRNA_H-paniculata_contig5163.12490.1 ID=mRNA_H-paniculata_contig5163.12490.1|Name=mRNA_H-paniculata_contig5163.12490.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1638bp|location=Sequence derived from alignment at H-paniculata_contig5163:3457..11942- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGCGCCGTGGGTCCATCAGGATAATATGGGGTTGGTGATCGAGAT
GGAGGCGCCGTGGGTCCATCAGGATAATATGGGGTTGGTGATCGAGACTG
CGGAGGAAGAGGAAAGGCGAAGAGCGTTGGCCGAAACTGAGTTGCAACGG
CAAAAAGATCAGGAGGAGTGGGACAGGGCGTTCGAGGAGGAGCTGATGCA
AACGGGTCTGCCGGAAGATGTAGTGGCAGCGTGTACTTACCAAATACTAA
AGACTGCGGAGGAAGAGGAAAGGCGAAGAGCGTTGGCCGAAACTGAGTTG
CAACGGCAAAAAGATCAGGAGGAGTGGGACAGGGCGTTCGAGGAGGAGCT
GATGCAAACGGGTCTGCCGGAAGATGTAGTGGCAGCGTGTACTTACCAAA
TACTAAAGGGACTGACATATCTCCACGAGAACAACCAGTTGCACCGGGAT
GTAAAGCCGAGCAACATTCTTCTCAACGCAAGAGGAGAGGGACTGACATA
TCTCCACGAGAACAACCAGTTGCACCGGGATGTAAAGCCGAGCAACATTC
TTCTCAACGCAAGAGGAGAGGTGAAATTGACAGATTTTGGGATAGCTCGC
GAACTTGACCACGCGGGAGCGATGGTGGAGACAGTGGTGGGGACCGTGCG
TTACATGTCTCCGGAGCGATTGCATGGCGAGGCGTACGGGCAGCCGGCGG
ACGTATGGGGTTTAGGGTTGGTTATGATCGAATGCGTTACTCAGGTGAAA
TTGACAGATTTTGGGATAGCTCGCGAACTTGACCACGCGGGAGCGATGGT
GGAGACAGTGGTGGGGACCGTGCGTTACATGTCTCCGGAGCGATTGCATG
GCGAGGCGTACGGGCAGCCGGCGGACGTATGGGGTTTAGGGTTGGTTATG
ATCGAATGCGTTACTCAGGAGGCTCCATATGCCGACGGCTGCAGTCAGAT
AGAAATACTTCAGACCTTGAAGGAGCATGGGGGCGACGGCTTATTGCCAT
CGGGCTTGGAGAACCGAGTGCCGCTAAGCGACGCGTTCGTTGAGTTCGTG
TCGGACTGTCTGAAGGTTGCGCCAAAGGAGGCTCCATATGCCGACGGCTG
CAGTCAGATAGAAATACTTCAGACCTTGAAGGAGCATGGGGGCGACGGCT
TATTGCCATCGGGCTTGGAGAACCGAGTGCCGCTAAGCGACGCGTTCGTT
GAGTTCGTGTCGGACTGTCTGAAGGTTGCGCCAAAGGAACGGCTCTCAAC
GGCAGAGTTATTGAACTCGCGCTGGTTTGTTGAGCAAGGGATACACGGCA
GGGAGGAGGCTGTCGAGCTGATGGCTGAGTACTTGGAGGGTCTGTACGGC
CCACACGCTTTCAAGTTCTTTGGCGAGGACATTGCCGACGTCACCACATC
CGAAATGGCGACGCAACAAGCTCAGCTGCAATATTGAGAACGGCTCTCAA
CGGCAGAGTTATTGAACTCGCGCTGGTTTGTTGAGCAAGGGATACACGGC
AGGGAGGAGGCTGTCGAGCTGATGGCTGAGTACTTGGAGGGTCTGTACGG
CCCACACGCTTTCAAGTTCTTTGGCGAGGACATTGCCGACGTCACCACAT
CCGAAATGGCGACGCAACAAGCTCAGCTGCAATATTGA
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