mRNA_H-paniculata_contig51620.12489.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig51620.12489.1
Unique NamemRNA_H-paniculata_contig51620.12489.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig51620.12489.1 vs. uniprot
Match: A0A6H5JHJ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHJ3_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 2.590e-9
Identity = 35/96 (36.46%), Postives = 51/96 (53.12%), Query Frame = 1 
Query:    4 GNRWVADSGASNHMTNNLAKMYDIRKPVTGEDVVMLEGGSIIMVEFVGKLNLIF-------HSTPDVPAIIEVSYLPELNFNLFSLHKIKGKYSVL 270
            G RWVADSGASN  TN+   MYD+++       V++  G ++ V+ +G  NL F         T     + +VS +  L+FNLFS H +  K  +L
Sbjct:  204 GERWVADSGASNSFTNSSLHMYDLQEIPANRKYVVVGDGRLLDVQAIGSFNLSFFQEDENGEKTTMCVKLTDVSVVESLSFNLFSTHAVSLKQPIL 299
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BLAST of mRNA_H-paniculata_contig51620.12489.1 vs. uniprot
Match: A0A834WCK0_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834WCK0_9FABA)

HSP 1 Score: 50.4 bits (119), Expect = 4.030e-5
Identity = 27/80 (33.75%), Postives = 46/80 (57.50%), Query Frame = 1 
Query:    1 NGNRWVADSGASNHMTNNLAKMYDIRKPVTGEDVVMLEGGSIIMVEFVGKLNLIFHSTPDVPAIIEVSYLPELNFNLFSL 240
            N + W ADSG+SNH+TNNL+ +  + +   G + V +  GS + ++ +G   L  H       + ++ Y+PEL+ NL S+
Sbjct:  367 NDDAWFADSGSSNHLTNNLSNIQ-VSQQYDGGEQVHIANGSGLPIQHIGSSEL--HHNSQTFKLNQILYVPELSKNLLSI 443
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BLAST of mRNA_H-paniculata_contig51620.12489.1 vs. uniprot
Match: A0A6G0X3B5_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X3B5_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 5.460e-5
Identity = 33/84 (39.29%), Postives = 48/84 (57.14%), Query Frame = 1 
Query:    7 NRWVADSGASNHMTNNLAKMYDIRKPVTGEDVVMLEGGSIIMVEFVGKLNLIFHSTPDVPAIIE---VSYLPELNFNLFSLHKI 249
            N WV DSGAS+H  NN +   ++ +P TG  VV    G  + +E  G ++L  + TP     +E   VSY+P L +NLFSL ++
Sbjct:  295 NEWVIDSGASDHFCNNSSWFTNL-EPSTG--VVRAANGGDMAIEGCGSIHLEMN-TPSGIVEVELQNVSYMPSLQYNLFSLSRV 374
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig51620.12489.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JHJ3_9PHAE2.590e-936.46Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A834WCK0_9FABA4.030e-533.75Retrovirus-related Pol polyprotein from transposon... [more]
A0A6G0X3B5_9STRA5.460e-539.29Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig51620contigH-paniculata_contig51620:114..389 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size276
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930508.9690595-CDS-H-paniculata_contig51620:113..3891622930508.9690595-CDS-H-paniculata_contig51620:113..389Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51620 114..389 -
1691481324.3807824-CDS-H-paniculata_contig51620:113..3891691481324.3807824-CDS-H-paniculata_contig51620:113..389Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51620 114..389 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig51620.12489.1prot_H-paniculata_contig51620.12489.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig51620 114..389 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig51620.12489.1

>prot_H-paniculata_contig51620.12489.1 ID=prot_H-paniculata_contig51620.12489.1|Name=mRNA_H-paniculata_contig51620.12489.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp
NGNRWVADSGASNHMTNNLAKMYDIRKPVTGEDVVMLEGGSIIMVEFVGK
LNLIFHSTPDVPAIIEVSYLPELNFNLFSLHKIKGKYSVLLA
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mRNA from alignment at H-paniculata_contig51620:114..389-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig51620.12489.1 ID=mRNA_H-paniculata_contig51620.12489.1|Name=mRNA_H-paniculata_contig51620.12489.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=276bp|location=Sequence derived from alignment at H-paniculata_contig51620:114..389- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATGGCAATAGGTGGGTGGCTGATTCCGGTGCAAGTAATCACATGACGAA
CAATCTTGCAAAAATGTATGATATTCGCAAGCCGGTAACAGGGGAAGATG
TGGTAATGTTGGAGGGTGGATCGATTATAATGGTGGAGTTTGTGGGAAAG
TTGAATTTGATTTTTCACTCCACTCCTGACGTGCCTGCCATAATTGAAGT
GTCATACTTACCGGAGTTGAACTTCAACCTTTTTTCCCTCCACAAAATCA
AAGGGAAGTATTCAGTACTTTTGGCT
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Coding sequence (CDS) from alignment at H-paniculata_contig51620:114..389-

>mRNA_H-paniculata_contig51620.12489.1 ID=mRNA_H-paniculata_contig51620.12489.1|Name=mRNA_H-paniculata_contig51620.12489.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at H-paniculata_contig51620:114..389- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATGGCAATAGGTGGGTGGCTGATTCCGGTGCAAGTAATCACATGACGAA
CAATCTTGCAAAAATGTATGATATTCGCAAGCCGGTAACAGGGGAAGATG
TGGTAATGTTGGAGGGTGGATCGATTATAATGGTGGAGTTTGTGGGAAAG
TTGAATTTGATTTTTCACTCCACTCCTGACGTGCCTGCCATAATTGAAGT
GTCATACTTACCGGAGTTGAACTTCAACCTTTTTTCCCTCCACAAAATCA
AAGGGAAGTATTCAGTACTTTTGGCTAATGGCAATAGGTGGGTGGCTGAT
TCCGGTGCAAGTAATCACATGACGAACAATCTTGCAAAAATGTATGATAT
TCGCAAGCCGGTAACAGGGGAAGATGTGGTAATGTTGGAGGGTGGATCGA
TTATAATGGTGGAGTTTGTGGGAAAGTTGAATTTGATTTTTCACTCCACT
CCTGACGTGCCTGCCATAATTGAAGTGTCATACTTACCGGAGTTGAACTT
CAACCTTTTTTCCCTCCACAAAATCAAAGGGAAGTATTCAGTACTTTTGG
CT
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