mRNA_H-paniculata_contig514.12451.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig514.12451.1
Unique NamemRNA_H-paniculata_contig514.12451.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig514.12451.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig514contigH-paniculata_contig514:13651..14345 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size695
Cds size462
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig514.12451.1prot_H-paniculata_contig514.12451.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig514 13880..14341 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930504.3923054-UTR-H-paniculata_contig514:13650..138791622930504.3923054-UTR-H-paniculata_contig514:13650..13879Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig514 13651..13879 +
1691481322.3384986-UTR-H-paniculata_contig514:13650..138791691481322.3384986-UTR-H-paniculata_contig514:13650..13879Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig514 13651..13879 +
1622930504.4161215-UTR-H-paniculata_contig514:14341..143451622930504.4161215-UTR-H-paniculata_contig514:14341..14345Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig514 14342..14345 +
1691481322.358559-UTR-H-paniculata_contig514:14341..143451691481322.358559-UTR-H-paniculata_contig514:14341..14345Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig514 14342..14345 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930504.4045434-CDS-H-paniculata_contig514:13879..143411622930504.4045434-CDS-H-paniculata_contig514:13879..14341Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig514 13880..14341 +
1691481322.350302-CDS-H-paniculata_contig514:13879..143411691481322.350302-CDS-H-paniculata_contig514:13879..14341Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig514 13880..14341 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig514.12451.1

>prot_H-paniculata_contig514.12451.1 ID=prot_H-paniculata_contig514.12451.1|Name=mRNA_H-paniculata_contig514.12451.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=154bp
MGPFVHSLTSFCSFRNSSVLLRARSSQLFILLRFLHIRDSFLVRIDVLYV
LLLLCPQLLPPQLKTATHSVKGLAFSVQAQGSRFGLLICRRRVTKGAAGE
LVGAPYRHTTSQHLAESFTTLVQPQDRLRHEFRNQHYHSGESCIFRREPI
GPG*
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mRNA from alignment at H-paniculata_contig514:13651..14345+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig514.12451.1 ID=mRNA_H-paniculata_contig514.12451.1|Name=mRNA_H-paniculata_contig514.12451.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=695bp|location=Sequence derived from alignment at H-paniculata_contig514:13651..14345+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGACTGCTGCCGTTTGCTTCACTGAATCCTCCATGCTGTTGCCATCTTCC
ACGAGCGCAAAATAGAGCATGAGGACGCCCCGGGACTGACATGCCGAGTT
GAGAGCATCATGCTTGGGTTTCAAGATTTCACGCTGTTCCTGAGCGGACG
TCTGCTCCTGCGTCGTCTCCTCTGCGATGGTCTGCGTTGTGGAATCCTCT
GTGGGACTGTCATCTTCGTGTAGGAGTGCATGGGCCCGTTCGTTCACAGT
CTGACAAGTTTCTGCTCCTTTCGAAATAGCAGCGTACTTCTTCGCGCGCG
CAGCAGCCAGCTCTTCATCCTTCTCCGCTTTCTTCATATTCGTGACTCGT
TCTTGGTACGCATCGACGTTCTTTATGTGCTCTTGCTCCTCTGCCCACAG
TTGTTGCCACCGCAGCTCAAGACTGCCACCCACAGCGTCAAGGGCCTCGC
CTTCTCTGTACAAGCACAGGGCAGCCGCTTTGGCCTTCTTATTTGCCGCC
GTCGGGTTACCAAGGGCGCCGCCGGTGAGCTTGTTGGTGCCCCCTATCGC
CACACAACATCCCAGCACCTCGCCGAGAGCTTTACGACTCTCGTGCAGCC
TCAAGACCGTCTGCGGCACGAGTTTCGCAACCAACATTACCACTCCGGCG
AGTCGTGCATCTTTCGCCGAGAGCCCATCGGCCCGGGGTAAAAAT
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Coding sequence (CDS) from alignment at H-paniculata_contig514:13651..14345+

>mRNA_H-paniculata_contig514.12451.1 ID=mRNA_H-paniculata_contig514.12451.1|Name=mRNA_H-paniculata_contig514.12451.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=924bp|location=Sequence derived from alignment at H-paniculata_contig514:13651..14345+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCCCGTTCGTTCACAGTCTGACAAGTTTCTGCTCCTTTCGAAATAG
CAGCGTACTTCTTCGCGCGCGCAGCAGCCAGCTCTTCATCCTTCTCCGCT
TTCTTCATATTCGTGACTCGTTCTTGGTACGCATCGACGTTCTTTATGTG
CTCTTGCTCCTCTGCCCACAGTTGTTGCCACCGCAGCTCAAGACTGCCAC
CCACAGCGTCAAGGGCCTCGCCTTCTCTGTACAAGCACAGGGCAGCCGCT
TTGGCCTTCTTATTTGCCGCCGTCGGGTTACCAAGGGCGCCGCCGGTGAG
CTTGTTGGTGCCCCCTATCGCCACACAACATCCCAGCACCTCGCCGAGAG
CTTTACGACTCTCGTGCAGCCTCAAGACCGTCTGCGGCACGAGTTTCGCA
ACCAACATTACCACTCCGGCGAGTCGTGCATCTTTCGCCGAGAGCCCATC
GGCCCGGGGTAAATGGGCCCGTTCGTTCACAGTCTGACAAGTTTCTGCTC
CTTTCGAAATAGCAGCGTACTTCTTCGCGCGCGCAGCAGCCAGCTCTTCA
TCCTTCTCCGCTTTCTTCATATTCGTGACTCGTTCTTGGTACGCATCGAC
GTTCTTTATGTGCTCTTGCTCCTCTGCCCACAGTTGTTGCCACCGCAGCT
CAAGACTGCCACCCACAGCGTCAAGGGCCTCGCCTTCTCTGTACAAGCAC
AGGGCAGCCGCTTTGGCCTTCTTATTTGCCGCCGTCGGGTTACCAAGGGC
GCCGCCGGTGAGCTTGTTGGTGCCCCCTATCGCCACACAACATCCCAGCA
CCTCGCCGAGAGCTTTACGACTCTCGTGCAGCCTCAAGACCGTCTGCGGC
ACGAGTTTCGCAACCAACATTACCACTCCGGCGAGTCGTGCATCTTTCGC
CGAGAGCCCATCGGCCCGGGGTAA
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