prot_H-paniculata_contig51315.12443.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig51315.12443.1
Unique Nameprot_H-paniculata_contig51315.12443.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length73
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig51315.12443.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 50..73
e-value: 0.0035
score: 17.5
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 26..48
e-value: 4.0E-5
score: 21.5
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 1..22
e-value: 7.1E-4
score: 19.6
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 47..73
score: 6.862
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 9..46
score: 10.994
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..73
e-value: 4.5E-20
score: 73.7
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 1..73
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..20
score: 5.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig51315contigH-paniculata_contig51315:143..995 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig51315.12443.1mRNA_H-paniculata_contig51315.12443.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig51315 122..995 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig51315.12443.1 ID=prot_H-paniculata_contig51315.12443.1|Name=mRNA_H-paniculata_contig51315.12443.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp
MQREGVTPNIVSYNSTITACGEGGDGKRLEEATSLWREMQREGVTPDSMC
YNSVIIACEGGQWEEAMRLLSEM
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf