mRNA_H-paniculata_contig5118.12425.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5118.12425.1
Unique NamemRNA_H-paniculata_contig5118.12425.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5118.12425.1 vs. uniprot
Match: D7G7J1_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J1_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 6.940e-20
Identity = 45/72 (62.50%), Postives = 54/72 (75.00%), Query Frame = 2 
Query:    2 ENFTLLDEDMVELTEACEDIAGLFERNGLGPILRGAVLGSALSTDAHFASAVSTTSPLFKIPVDVVQRGRDH 217
            E +   D D +ELT A EDI GLFE + +G ILRGAVL  A++  AH+ASAVS  SPLFK+PVD+VQRGRDH
Sbjct:  282 EGYVATDYDHLELTVAAEDITGLFEHSAIGDILRGAVLSPAMAVGAHYASAVSNASPLFKLPVDMVQRGRDH 353
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BLAST of mRNA_H-paniculata_contig5118.12425.1 vs. uniprot
Match: A0A6H5JQ31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ31_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 2.120e-18
Identity = 43/72 (59.72%), Postives = 53/72 (73.61%), Query Frame = 2 
Query:    2 ENFTLLDEDMVELTEACEDIAGLFERNGLGPILRGAVLGSALSTDAHFASAVSTTSPLFKIPVDVVQRGRDH 217
            E +   D D +ELT A +DI GLFE + +G ILRGAVL  A++  AH+ASAVS  SPLFK+PVD+VQR RDH
Sbjct:  267 EGYVATDYDHLELTVAADDITGLFEHSTIGDILRGAVLSPAMAVGAHYASAVSNASPLFKLPVDMVQRARDH 338
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BLAST of mRNA_H-paniculata_contig5118.12425.1 vs. uniprot
Match: D7G7J2_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J2_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 2.130e-18
Identity = 44/72 (61.11%), Postives = 52/72 (72.22%), Query Frame = 2 
Query:    2 ENFTLLDEDMVELTEACEDIAGLFERNGLGPILRGAVLGSALSTDAHFASAVSTTSPLFKIPVDVVQRGRDH 217
            E +   D D +ELT A EDI GLFE + +G ILRGAVL  A++   HFASAVS  SPLFK+PVD+VQR RDH
Sbjct:  282 EGYVATDYDHLELTVAAEDITGLFEHSAIGDILRGAVLSPAMAVWPHFASAVSNASPLFKLPVDMVQRARDH 353
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BLAST of mRNA_H-paniculata_contig5118.12425.1 vs. uniprot
Match: D7FQW8_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQW8_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 4.240e-16
Identity = 39/72 (54.17%), Postives = 51/72 (70.83%), Query Frame = 2 
Query:    2 ENFTLLDEDMVELTEACEDIAGLFERNGLGPILRGAVLGSALSTDAHFASAVSTTSPLFKIPVDVVQRGRDH 217
            + +   D+D VEL  A  D+AG+F RN +  +LRGAVL  AL+ DA+++  VS  SPLFK+PVD VQRGRDH
Sbjct:  249 DGYVSTDDDNVELNVASADMAGIFARNNVADVLRGAVLSPALTVDAYYSPVVSNLSPLFKLPVDGVQRGRDH 320
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BLAST of mRNA_H-paniculata_contig5118.12425.1 vs. uniprot
Match: A0A6H5JBZ5_9PHAE (DOMON domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBZ5_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 5.810e-12
Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 2 
Query:   59 IAGLFERNGLGPILRGAVLGSALSTDAHFASAVSTTSPLFKIPVDVVQRGRDH 217
            +AG+F RN +  +LRGAVL  AL+ DA+++  VS  SPLFK+PVD VQRGRDH
Sbjct:    1 MAGIFARNDVADVLRGAVLSPALTVDAYYSPVVSNLSPLFKLPVDGVQRGRDH 53
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BLAST of mRNA_H-paniculata_contig5118.12425.1 vs. uniprot
Match: A0A6H5K036_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K036_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 1.780e-9
Identity = 32/63 (50.79%), Postives = 42/63 (66.67%), Query Frame = 2 
Query:   29 MVELTEACEDIAGLFERNGLGPILRGAVLGSALSTDAHFASAVSTTSPLFKIPVDVVQRGRDH 217
            ++EL  +      LF+   +  +LRGAVL   L+ D+HF +AVS  SPLFK+PVD VQRGRDH
Sbjct:  444 VLELHRSNASTNSLFQ---VADVLRGAVLSPVLAADSHFTTAVSNGSPLFKLPVDAVQRGRDH 503
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BLAST of mRNA_H-paniculata_contig5118.12425.1 vs. uniprot
Match: D8LFE6_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFE6_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 4.720e-9
Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = 2 
Query:   26 DMVELTEA--CEDIAGLFERNGLGPILRGAVLGSALSTDAHFASAVSTTSPLFKIPVDVVQRGRDH 217
            D  EL  A   + +   F+   +  +LRGAVL   L+ +++F +AVS  SPLFK+PVD VQRGRDH
Sbjct:  364 DNTELAAAVGADSLVSFFDSVEVADVLRGAVLSPVLAANSYFTTAVSNGSPLFKLPVDAVQRGRDH 429
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BLAST of mRNA_H-paniculata_contig5118.12425.1 vs. uniprot
Match: A0A6H5JBL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBL8_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 6.470e-9
Identity = 31/66 (46.97%), Postives = 40/66 (60.61%), Query Frame = 2 
Query:   26 DMVELTEA--CEDIAGLFERNGLGPILRGAVLGSALSTDAHFASAVSTTSPLFKIPVDVVQRGRDH 217
            D +EL  A   + +   F    +  +LRGAVL    + D H+ +AVS  SPLFK+PVD VQRGRDH
Sbjct:  475 DNIELAAAVGADSLVSFFNNVKVVDVLRGAVLSPVYAADTHYTAAVSNGSPLFKLPVDSVQRGRDH 540
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BLAST of mRNA_H-paniculata_contig5118.12425.1 vs. uniprot
Match: D7FX03_ECTSI (Peroxinectin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX03_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 8.540e-9
Identity = 31/66 (46.97%), Postives = 40/66 (60.61%), Query Frame = 2 
Query:   26 DMVELTEA--CEDIAGLFERNGLGPILRGAVLGSALSTDAHFASAVSTTSPLFKIPVDVVQRGRDH 217
            D +EL  A   + +   F    +  +LRGAVL    + D H+ +AVS  SPLFK+PVD VQRGRDH
Sbjct:  444 DNIELAAAVGADGLVSFFNNVKVVDVLRGAVLSPVYAADTHYTAAVSNGSPLFKLPVDSVQRGRDH 509
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5118.12425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7G7J1_ECTSI6.940e-2062.50Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5JQ31_9PHAE2.120e-1859.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7J2_ECTSI2.130e-1861.11Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D7FQW8_ECTSI4.240e-1654.17Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5JBZ5_9PHAE5.810e-1260.38DOMON domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K036_9PHAE1.780e-950.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFE6_ECTSI4.720e-946.97Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5JBL8_9PHAE6.470e-946.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX03_ECTSI8.540e-946.97Peroxinectin n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5118contigH-paniculata_contig5118:7217..10213 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.0
Seed ortholog evalue1e-15
Seed eggNOG ortholog2880.D7G7J1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.peroxidase activity
EggNOG OGsKOG2408@1,KOG2408@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size252
Cds size222
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5118.12425.1prot_H-paniculata_contig5118.12425.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5118 9466..10213 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930500.6010263-UTR-H-paniculata_contig5118:7216..72411622930500.6010263-UTR-H-paniculata_contig5118:7216..7241Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5118 7217..7241 +
1691481320.6455202-UTR-H-paniculata_contig5118:7216..72411691481320.6455202-UTR-H-paniculata_contig5118:7216..7241Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5118 7217..7241 +
1622930500.6160083-UTR-H-paniculata_contig5118:9462..94651622930500.6160083-UTR-H-paniculata_contig5118:9462..9465Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5118 9463..9465 +
1691481320.6641324-UTR-H-paniculata_contig5118:9462..94651691481320.6641324-UTR-H-paniculata_contig5118:9462..9465Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5118 9463..9465 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930500.6291528-CDS-H-paniculata_contig5118:9465..96551622930500.6291528-CDS-H-paniculata_contig5118:9465..9655Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5118 9466..9655 +
1691481320.6741312-CDS-H-paniculata_contig5118:9465..96551691481320.6741312-CDS-H-paniculata_contig5118:9465..9655Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5118 9466..9655 +
1622930500.640866-CDS-H-paniculata_contig5118:10181..102131622930500.640866-CDS-H-paniculata_contig5118:10181..10213Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5118 10182..10213 +
1691481320.684341-CDS-H-paniculata_contig5118:10181..102131691481320.684341-CDS-H-paniculata_contig5118:10181..10213Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5118 10182..10213 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5118.12425.1

>prot_H-paniculata_contig5118.12425.1 ID=prot_H-paniculata_contig5118.12425.1|Name=mRNA_H-paniculata_contig5118.12425.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
MVELTEACEDIAGLFERNGLGPILRGAVLGSALSTDAHFASAVSTTSPLF
KIPVDVVQRGRDHVKVSQPTTMQG
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mRNA from alignment at H-paniculata_contig5118:7217..10213+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5118.12425.1 ID=mRNA_H-paniculata_contig5118.12425.1|Name=mRNA_H-paniculata_contig5118.12425.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2997bp|location=Sequence derived from alignment at H-paniculata_contig5118:7217..10213+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAAAATTTCACCCTTCTGGACGAGGTTTGTGCCGTAGAGAAGAGTCTTC
CTACGTTACGATGTTTATTTCTTCATGTTCTCAACACTTTAGTTGAAGTG
TTCATACCCATGATCGGAGGATCCAAGTGCCCAGATGCAAAGCTGTGTCA
GTTGTAGAGGGTACATACACCGCAGCCGCTATTTTACTGCGGAATGTGCC
AACTGCCAGAGAAGTCTTGTGTGATGTGTTTTGATCTATATATGGACGCT
GCTGGTGTTGTGGGGAACTTCGATCATTTGACAGGGGTCTACGTGACCGG
GCTAAAGTATTGAATACTAATACTAACTACTACTGCTACTCCTGCTCCTG
CTCCTACTACTACCACTACTAACAACAATGACAATAATAATCCTCTGGTA
GCAGGTTTACCTCGCAGATAGCAAGCAAGTCCAGGGTAGACCGCCTGCTT
TTAGCTACAGTAACGTGCGTCTCGGGCAGAAACCCCTTTTTTTTACGTCA
CCAACAGGGAAAAATATAACAAAATTGACAACATAATAGGGGAGCCAATC
AGTCAGTCAGTCAGTCCGTCAATTTTCGAAGATAATCAGTCCCCTGAGCG
TTGCTGCCGAATCATGTCGACCGCGTCAGCTTATATTTTTCAAATGTTTT
TTGTTCTTGTTCCTGTTGTATATGCCTGGAGCAACCGTTTGCTTATCAAC
AACGATGTCATCCCCCCGGACGAATTCAATTACTCAGAATTTTCGCAATG
AGCACAAAACTTTATAGGTTGTCAAGGGTCGAAAATAGTGGTTGACGTTG
CAACTCGGCATACTAACCCGTATAACAAGAGTCATATTGACGTCACCGTA
CTGAGCCGTCCTGACGCGTGCTGCAACACGCATGCGCGTATTTTTGCTCG
CTGCCCCCCTTAGCGCATTCGCGAGTACACGGTGGTTTGGGTATTTTTTT
CTACCTTACGTTAGCGTCCTTAGTAGGAGGCGCATTTTTTGCGAAAATGT
GGAAATGTGGAAATATTCAGTTTTGGGGCTATCATTAAGAGCCGAAATTT
ACTCAAAAGAAGTGGCAACCGTTGTTTTCTTGCTTCTCAACAAGAGCAGG
AATTGGCAGCTCTTTCCCGTAATTGTCGTCTCGTAAATCTTCGCTCGAAC
ATTTGAAAAACTCCAGATTCAACATGATGTTCATGAAATAGAGAATGAAC
TTGCTTTTAGAGAACAAGCCTGAAACGCACACTTTTTTTCAAGCGACATG
TTCTAGCGCGCTCATTTCGACGAGTTAGACTGCGTGCAGCAGCTCAAACA
AAAGACCTTGCTCATAGCAGCGCGCAGATACTTGCTGTACGGTCACCGAT
AGTCTCGGTGGCGAGTTACAGCAGATTGAAAGACCTGCCTGGGCTGCCGC
AAGCAAGAGCATCGTTTAAAAAAATCCGCGCCGAATAAATTAATCGGTTT
TCCGCCCATTCTTGTCACTGCCATAAATTTCGAACCATGAAATGGATTCA
CTCAGTTGAGGTACTGACGTCATCGGGTGACTGAGAGCTTTCGATTGAGC
TATCAACCAGCTGAATCGGCCATGTTGATCGGAAACTACACCAGGCGGAA
GAATCGGTGGCATGGACAAAAACATATGGAGCTCGTTCTTCAAAAAAAGT
TCATTCTCCATTTCACCAATATCATGTTATTTCCGGAGTTTCATATTCCC
AGATTTCGGCTAAAACCATGCCTGCTAGTAACGACCCTACGCGAAAGCGT
GTTTTGTTCATAGGTCAACCGTTATTTCCCGATACTCATGCTGCCCTTCG
GAACGTTGACATGCTAAAAGTGAAGCGCGCTGACCGTTCACAGGGTTTGG
CGAAAATTGAAGACATGAATAATAGAAAGCAGACAGCTACAAGGCGGCCA
ACTCGTCACGAAACTGCGAAGAACGATGCCTCACGCGTACATAGCCCAGC
TAGCTCATCTCGACACTGAGGCAAACAGCATATTAGTGTCCCATATTAAA
AGTGCCCGCAAAACAGTCCTTCTGACGCCATGATGTACTTTTAGGGCCTT
TTTTCTTGATCAACGATATTTGGAAACATACATACGTACATATAACTGGG
TATATATGTGTGTACGAGACGTTAATTTTTCCGCTTTTTTTTAAGTTCTA
TATATACAATATGTGTGTGTGTGTATATATATATATCCACCTATAACAAA
AATAATGCTGACTACTGAGTACGTAAAAATACACCCAAATTCACAGGATA
TGGTTGAACTGACGGAGGCGTGCGAGGATATCGCTGGGCTCTTCGAACGC
AACGGCCTGGGCCCCATACTCCGCGGGGCAGTGCTAGGGTCTGCCCTTTC
GACTGATGCGCACTTTGCCTCTGCCGTTTCGACCACGTCTCCGTTGTTCA
AAATTCCCGTCGACGTCGTCCAAAGGGGTCGTGACCACGGTGAGCAAGCA
AGGGGAACGGGCGAGGGGGGGGGGGGGGGGGGGCAAAAAGAGGGGAGGCG
TTATATGCGCGCTGGGGTGAATACGTTTTTGAGCACCCACCAGATAACGA
ACGTAGTGAAGCATGTGCCATGCTAGGGTTCATGCAGCCTGCATGCATTC
TCAGCTTGAACTATAATCACGAGAAACTTTGTCAGCACACTTGTGAGCAC
ACCTGTGGACAACCTTAGGAGGATAATTGTAGCGCTCGTATCCGCCCTGC
ACTGTAGGAAACGGAATAGAAGGCAATAGCGGTTCCAGGAGATTTAAACT
GGCGTGAAAAGGCGAGGGGGGAGATAGAAAGGGTAGGTGAAGCGTTTGGG
GCCACATTTGGCAACAATGTGAGAAAGAGCAAGTGGACACCGGAAGTTGC
TCTGATAGGAATAGATCTCCTTCCTCTCGAGGACGCGCGGTCAATGGCCT
GATAACTATGATACGCAAAACATGAGTAGGCGCCCCCTATTTTCTCCCCC
CCCCCCTATACTAAGTTAAGGTATCCCAACCTACAACGATGCAAGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig5118:7217..10213+

>mRNA_H-paniculata_contig5118.12425.1 ID=mRNA_H-paniculata_contig5118.12425.1|Name=mRNA_H-paniculata_contig5118.12425.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig5118:7217..10213+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTGAACTGACGGAGGCGTGCGAGGATATCGCTGGGCTCTTCGAACG
CAACGGCCTGGGCCCCATACTCCGCGGGGCAGTGCTAGGGTCTGCCCTTT
CGACTGATGCGCACTTTGCCTCTGCCGTTTCGACCACGTCTCCGTTGTTC
AAAATTCCCGTCGACGTCGTCCAAAGGGGTCGTGACCACGATGGTTGAAC
TGACGGAGGCGTGCGAGGATATCGCTGGGCTCTTCGAACGCAACGGCCTG
GGCCCCATACTCCGCGGGGCAGTGCTAGGGTCTGCCCTTTCGACTGATGC
GCACTTTGCCTCTGCCGTTTCGACCACGTCTCCGTTGTTCAAAATTCCCG
TCGACGTCGTCCAAAGGGGTCGTGACCACGTTAAGGTATCCCAACCTACA
ACGATGCAAGGGTTAAGGTATCCCAACCTACAACGATGCAAGGG
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