mRNA_H-paniculata_contig51151.12420.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig51151.12420.1
Unique NamemRNA_H-paniculata_contig51151.12420.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig51151.12420.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig51151contigH-paniculata_contig51151:417..1259 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size320
Cds size294
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig51151.12420.1prot_H-paniculata_contig51151.12420.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig51151 442..1259 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930500.0317743-UTR-H-paniculata_contig51151:416..4411622930500.0317743-UTR-H-paniculata_contig51151:416..441Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig51151 417..441 +
1691481320.4152772-UTR-H-paniculata_contig51151:416..4411691481320.4152772-UTR-H-paniculata_contig51151:416..441Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig51151 417..441 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930500.047861-CDS-H-paniculata_contig51151:441..5081622930500.047861-CDS-H-paniculata_contig51151:441..508Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51151 442..508 +
1691481320.4244452-CDS-H-paniculata_contig51151:441..5081691481320.4244452-CDS-H-paniculata_contig51151:441..508Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51151 442..508 +
1622930500.0655427-CDS-H-paniculata_contig51151:763..8771622930500.0655427-CDS-H-paniculata_contig51151:763..877Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51151 764..877 +
1691481320.4330997-CDS-H-paniculata_contig51151:763..8771691481320.4330997-CDS-H-paniculata_contig51151:763..877Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51151 764..877 +
1622930500.0817823-CDS-H-paniculata_contig51151:1146..12591622930500.0817823-CDS-H-paniculata_contig51151:1146..1259Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51151 1147..1259 +
1691481320.4423692-CDS-H-paniculata_contig51151:1146..12591691481320.4423692-CDS-H-paniculata_contig51151:1146..1259Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51151 1147..1259 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig51151.12420.1

>prot_H-paniculata_contig51151.12420.1 ID=prot_H-paniculata_contig51151.12420.1|Name=mRNA_H-paniculata_contig51151.12420.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=98bp
MKDSKGKKCYDGCDKDECCEKKDHEKCDDYECPDGWRWMKDSKGKKCYDG
CDKDECCEKKDDEKCDDYECPDGWCWTKDYKGKKCYDGCDKDECCEKK
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mRNA from alignment at H-paniculata_contig51151:417..1259+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig51151.12420.1 ID=mRNA_H-paniculata_contig51151.12420.1|Name=mRNA_H-paniculata_contig51151.12420.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=843bp|location=Sequence derived from alignment at H-paniculata_contig51151:417..1259+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAGTGCCCCGACGGGTGGAGGTGGATGAAGGACTCCAAGGGCAAGAAGT
GCTACGACGGGTGCGACAAGGACGAATGTTGTGAGAAGAAGGGTGAGTTC
GACGTGATCAGGTGCCGTTGGCATGAGAATGCACTGCGGCCTACGCGTGG
AGAGCCGCGGAACTAAGCTTTGTGTCATCGCTCTGACGTTGTTCAGGAAC
ATCGAGTTAGTGTCGGTGGAGATTTGTAGTAGTGCGATCGGGTGCTTTTC
CGGTGAATACTGAGAGTCGCATCGTTGCTCCAGGCGTAGACTGCCACGTC
AAGTGTTCGAATGATGTCTAACGGTTGTACTGGCGGGATCGCTACAGACC
ACGAGAAGTGCGACGACTACGAGTGCCCAGACGGATGGAGGTGGATGAAG
GACTCCAAGGGGAAGAAGTGCTACGATGGGTGCGACAAGGACGAATGTTG
CGAGAAGAAGGGTGAGTTCGGCGCGATTGGTTATTGACGGCGACAGGGCG
TGGGAAATACTTAGGGGCGTATATCGTCGAGAGGCGGGCAGCTAGGCTTT
GTAATCTCGCTCTCGCGTTATTGAGGGGGGTCGAGTGTGTTGAGCCGAAA
CACGTAAACACGCCATAGTACGATTATGAGTTCCATCGTTTGTCCAGTCG
TAGATTGCAATAGGTATCGACTATCCGTATGATTTCTACCAGCGTGACGG
ATGACGTTATGCATGGCCGTATCCGTTCAGACGACGAGAAGTGCGATGAC
TACGAGTGCCCCGACGGCTGGTGCTGGACGAAGGACTACAAAGGCAAGAA
GTGCTACGATGGATGCGACAAGGACGAATGTTGCGAGAAGAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig51151:417..1259+

>mRNA_H-paniculata_contig51151.12420.1 ID=mRNA_H-paniculata_contig51151.12420.1|Name=mRNA_H-paniculata_contig51151.12420.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=588bp|location=Sequence derived from alignment at H-paniculata_contig51151:417..1259+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGGACTCCAAGGGCAAGAAGTGCTACGACGGGTGCGACAAGGACGA
ATGTTGTGAGAAGAAGGATGAAGGACTCCAAGGGCAAGAAGTGCTACGAC
GGGTGCGACAAGGACGAATGTTGTGAGAAGAAGGACCACGAGAAGTGCGA
CGACTACGAGTGCCCAGACGGATGGAGGTGGATGAAGGACTCCAAGGGGA
AGAAGTGCTACGATGGGTGCGACAAGGACGAATGTTGCGAGAAGAAGGAC
CACGAGAAGTGCGACGACTACGAGTGCCCAGACGGATGGAGGTGGATGAA
GGACTCCAAGGGGAAGAAGTGCTACGATGGGTGCGACAAGGACGAATGTT
GCGAGAAGAAGGACGACGAGAAGTGCGATGACTACGAGTGCCCCGACGGC
TGGTGCTGGACGAAGGACTACAAAGGCAAGAAGTGCTACGATGGATGCGA
CAAGGACGAATGTTGCGAGAAGAAGACGACGAGAAGTGCGATGACTACGA
GTGCCCCGACGGCTGGTGCTGGACGAAGGACTACAAAGGCAAGAAGTGCT
ACGATGGATGCGACAAGGACGAATGTTGCGAGAAGAAG
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