mRNA_H-paniculata_contig51141.12417.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig51141.12417.1
Unique NamemRNA_H-paniculata_contig51141.12417.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig51141.12417.1 vs. uniprot
Match: A0A6H5JVR3_9PHAE (PAO protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVR3_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 3.300e-27
Identity = 49/68 (72.06%), Postives = 57/68 (83.82%), Query Frame = 1
Query:    1 SYVGGLVHDW-GSEPFVRGGYCYPRLDYDENTHADAAFALGDTLFFAGEHTNTPMGMSMHAAIDSGER 201
            +YVGGLVHDW   EPFVRGGYCYPR+ +DE THA  A ++  TLFFAGEHTNTP GM++HAAIDSG+R
Sbjct:  471 AYVGGLVHDWVKDEPFVRGGYCYPRIGFDETTHAHLAASINGTLFFAGEHTNTPTGMTVHAAIDSGDR 538          
BLAST of mRNA_H-paniculata_contig51141.12417.1 vs. uniprot
Match: D8LF22_ECTSI (Amine oxidase-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF22_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 1.990e-26
Identity = 48/68 (70.59%), Postives = 56/68 (82.35%), Query Frame = 1
Query:    1 SYVGGLVHDW-GSEPFVRGGYCYPRLDYDENTHADAAFALGDTLFFAGEHTNTPMGMSMHAAIDSGER 201
            +YVGGLVHDW   EPFVRGGYCYPR+ +DE THA  A ++  TLFFAGEHTNTP G ++HAAIDSG+R
Sbjct:  370 AYVGGLVHDWVKDEPFVRGGYCYPRIGFDETTHAHLAASVNGTLFFAGEHTNTPTGTTVHAAIDSGDR 437          
BLAST of mRNA_H-paniculata_contig51141.12417.1 vs. uniprot
Match: A0A484DUS0_BRELC (Amino_oxidase domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DUS0_BRELC)

HSP 1 Score: 70.1 bits (170), Expect = 1.880e-12
Identity = 32/67 (47.76%), Postives = 42/67 (62.69%), Query Frame = 1
Query:    4 YVGGLVHDWGSEPFVRGGYCYPRLDYDENTHADAAFALGDTLFFAGEHTNTPM-GMSMHAAIDSGER 201
            +V G   DWG EP++RGGY YPR+   +    D A  + + LFFAGE T     GMS+HAA+D+G R
Sbjct:  406 FVKGTYKDWGDEPWIRGGYAYPRVGQSDTASKDLAAPVNNRLFFAGEATAYEQPGMSVHAAVDTGTR 472          
BLAST of mRNA_H-paniculata_contig51141.12417.1 vs. uniprot
Match: D0MQX8_PHYIT (Amino_oxidase domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MQX8_PHYIT)

HSP 1 Score: 68.2 bits (165), Expect = 7.810e-12
Identity = 31/67 (46.27%), Postives = 41/67 (61.19%), Query Frame = 1
Query:    4 YVGGLVHDWGSEPFVRGGYCYPRLDYDENTHADAAFALGDTLFFAGEHTNTPM-GMSMHAAIDSGER 201
            YV G   DWG EP++RGGY +PR+   +    D A  +   +FFAGE T     GMS+HAA+D+G R
Sbjct:  281 YVKGTYKDWGDEPWIRGGYAFPRVGQSDTASYDLAAPVAGRIFFAGEATAFEQPGMSVHAAVDTGAR 347          
BLAST of mRNA_H-paniculata_contig51141.12417.1 vs. uniprot
Match: A0A0P1AT21_PLAHL (Amine oxidase-like protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AT21_PLAHL)

HSP 1 Score: 67.8 bits (164), Expect = 1.190e-11
Identity = 30/68 (44.12%), Postives = 45/68 (66.18%), Query Frame = 1
Query:    1 SYVGGLVHDWGSEPFVRGGYCYPRLDYDENTHADAAFALGDTLFFAGEHTNTPM-GMSMHAAIDSGER 201
            ++V G+  DWG EP++ GGY YPR+   ++  ++ A  + + LFFAGE T     GMS+HAA+D+G R
Sbjct:  339 NFVKGIYKDWGDEPWICGGYAYPRVGQSDSASSELAAPVDNRLFFAGEATAFEQPGMSVHAAVDTGTR 406          
BLAST of mRNA_H-paniculata_contig51141.12417.1 vs. uniprot
Match: G4ZPG5_PHYSP (Amino_oxidase domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZPG5_PHYSP)

HSP 1 Score: 66.6 bits (161), Expect = 2.820e-11
Identity = 30/67 (44.78%), Postives = 42/67 (62.69%), Query Frame = 1
Query:    4 YVGGLVHDWGSEPFVRGGYCYPRLDYDENTHADAAFALGDTLFFAGEHTNTPM-GMSMHAAIDSGER 201
            +V G+  DWG EP++ GGY +PR+   +    D A  + + +FFAGE T     GMS+HAAID+G R
Sbjct:  286 FVRGMYKDWGDEPWIGGGYAFPRVGQSDTASQDLAAPVDNRIFFAGEATAFEQPGMSVHAAIDTGSR 352          
BLAST of mRNA_H-paniculata_contig51141.12417.1 vs. uniprot
Match: W2NUE5_PHYPR (Amino_oxidase domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2NUE5_PHYPR)

HSP 1 Score: 66.6 bits (161), Expect = 3.120e-11
Identity = 30/67 (44.78%), Postives = 41/67 (61.19%), Query Frame = 1
Query:    4 YVGGLVHDWGSEPFVRGGYCYPRLDYDENTHADAAFALGDTLFFAGEHTNTPM-GMSMHAAIDSGER 201
            +V G   DWG EP++RGGY YPR+   +    D A  +   +FFAGE T     GMS+H+A+D+G R
Sbjct:  402 FVKGTYKDWGDEPWIRGGYAYPRVGQSDTASYDLAAPVDGRIFFAGEATAFEQPGMSVHSAVDTGTR 468          
BLAST of mRNA_H-paniculata_contig51141.12417.1 vs. uniprot
Match: A0A6A3LZZ9_9STRA (Amino_oxidase domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3LZZ9_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 4.270e-11
Identity = 30/67 (44.78%), Postives = 42/67 (62.69%), Query Frame = 1
Query:    4 YVGGLVHDWGSEPFVRGGYCYPRLDYDENTHADAAFALGDTLFFAGEHTNTPM-GMSMHAAIDSGER 201
            +V G+  DWG EP++ GGY +PR+   +    D A  + + +FFAGE T     GMS+HAAID+G R
Sbjct:  404 FVRGMYKDWGDEPWIGGGYAFPRVGQSDTASQDLAAPVDNRIFFAGEATAFEQPGMSVHAAIDTGTR 470          
BLAST of mRNA_H-paniculata_contig51141.12417.1 vs. uniprot
Match: A0A225X5D8_9STRA (Amino_oxidase domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X5D8_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 6.640e-10
Identity = 29/67 (43.28%), Postives = 43/67 (64.18%), Query Frame = 1
Query:    4 YVGGLVHDWGSEPFVRGGYCYPRLDYDENTHADAAFALGDTLFFAGEHTNTPM-GMSMHAAIDSGER 201
            +V G+  D+G EP++ GGY +PR+   ++   D A  + D +FFAGE T     GMS+HAA+D+G R
Sbjct:  282 FVKGMYKDFGDEPWIGGGYAFPRVGQLDSASFDLAAPIDDRIFFAGEATAFEQPGMSVHAAVDTGTR 348          
BLAST of mRNA_H-paniculata_contig51141.12417.1 vs. uniprot
Match: M4B442_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B442_HYAAE)

HSP 1 Score: 62.8 bits (151), Expect = 7.090e-10
Identity = 28/67 (41.79%), Postives = 44/67 (65.67%), Query Frame = 1
Query:    4 YVGGLVHDWGSEPFVRGGYCYPRLDYDENTHADAAFALGDTLFFAGEHTNTPM-GMSMHAAIDSGER 201
            +V G+  D+G+EP++ GGY +PR+   ++   D A  + + +FFAGE T     GMS+HAA+D+G R
Sbjct:  377 FVKGMYKDFGNEPWIGGGYAFPRVGQSDSASQDLAAPVDNRIFFAGEATAYEQPGMSVHAAVDTGTR 443          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig51141.12417.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5JVR3_9PHAE3.300e-2772.06PAO protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LF22_ECTSI1.990e-2670.59Amine oxidase-like protein n=1 Tax=Ectocarpus sili... [more]
A0A484DUS0_BRELC1.880e-1247.76Amino_oxidase domain-containing protein n=1 Tax=Br... [more]
D0MQX8_PHYIT7.810e-1246.27Amino_oxidase domain-containing protein n=2 Tax=Ph... [more]
A0A0P1AT21_PLAHL1.190e-1144.12Amine oxidase-like protein n=1 Tax=Plasmopara hals... [more]
G4ZPG5_PHYSP2.820e-1144.78Amino_oxidase domain-containing protein n=1 Tax=Ph... [more]
W2NUE5_PHYPR3.120e-1144.78Amino_oxidase domain-containing protein n=10 Tax=P... [more]
A0A6A3LZZ9_9STRA4.270e-1144.78Amino_oxidase domain-containing protein n=4 Tax=Ph... [more]
A0A225X5D8_9STRA6.640e-1043.28Amino_oxidase domain-containing protein n=1 Tax=Ph... [more]
M4B442_HYAAE7.090e-1041.79Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig51141contigH-paniculata_contig51141:582..785 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.4
Seed ortholog evalue6.8e-22
Seed eggNOG ortholog2880.D8LF22
KEGG koko:K19413
Hectar predicted targeting categoryother localisation
EggNOG free text desc.oxidoreductase activity
EggNOG OGsCOG1231@1,KOG0029@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons1
Model size204
Cds size204
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930499.677855-CDS-H-paniculata_contig51141:581..7851622930499.677855-CDS-H-paniculata_contig51141:581..785Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51141 582..785 +
1691481320.2669346-CDS-H-paniculata_contig51141:581..7851691481320.2669346-CDS-H-paniculata_contig51141:581..785Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51141 582..785 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig51141.12417.1prot_H-paniculata_contig51141.12417.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig51141 582..785 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig51141.12417.1

>prot_H-paniculata_contig51141.12417.1 ID=prot_H-paniculata_contig51141.12417.1|Name=mRNA_H-paniculata_contig51141.12417.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp
SYVGGLVHDWGSEPFVRGGYCYPRLDYDENTHADAAFALGDTLFFAGEHT
NTPMGMSMHAAIDSGER*
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mRNA from alignment at H-paniculata_contig51141:582..785+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig51141.12417.1 ID=mRNA_H-paniculata_contig51141.12417.1|Name=mRNA_H-paniculata_contig51141.12417.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=204bp|location=Sequence derived from alignment at H-paniculata_contig51141:582..785+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCTATGTGGGTGGCCTAGTGCATGATTGGGGGAGCGAGCCGTTCGTGAG GGGAGGCTACTGTTATCCAAGGCTAGACTATGACGAGAACACTCATGCTG ATGCTGCTTTTGCGCTGGGAGACACGCTGTTTTTCGCCGGGGAGCATACC AACACCCCCATGGGAATGAGCATGCACGCTGCGATTGATTCCGGAGAGAG GTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig51141:582..785+

>mRNA_H-paniculata_contig51141.12417.1 ID=mRNA_H-paniculata_contig51141.12417.1|Name=mRNA_H-paniculata_contig51141.12417.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at H-paniculata_contig51141:582..785+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCTATGTGGGTGGCCTAGTGCATGATTGGGGGAGCGAGCCGTTCGTGAG
GGGAGGCTACTGTTATCCAAGGCTAGACTATGACGAGAACACTCATGCTG
ATGCTGCTTTTGCGCTGGGAGACACGCTGTTTTTCGCCGGGGAGCATACC
AACACCCCCATGGGAATGAGCATGCACGCTGCGATTGATTCCGGAGAGAG
GTAATCCTATGTGGGTGGCCTAGTGCATGATTGGGGGAGCGAGCCGTTCG
TGAGGGGAGGCTACTGTTATCCAAGGCTAGACTATGACGAGAACACTCAT
GCTGATGCTGCTTTTGCGCTGGGAGACACGCTGTTTTTCGCCGGGGAGCA
TACCAACACCCCCATGGGAATGAGCATGCACGCTGCGATTGATTCCGGAG
AGAGGTAA
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