mRNA_H-paniculata_contig51140.12416.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig51140.12416.1
Unique NamemRNA_H-paniculata_contig51140.12416.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig51140.12416.1 vs. uniprot
Match: A0A6H5JAT4_9PHAE (CAF1C_H4-bd domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAT4_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 4.750e-40
Identity = 69/73 (94.52%), Postives = 71/73 (97.26%), Query Frame = 1 
Query:    1 SLTVQWLPSVKAQEDKDYAVHKLILGTHTSGSEQNYLMVANVNLPVAGAEIDNRTYDDEKGEMGGFGGVHGKV 219
            SLTVQWLPSVK+QE KDYAVHKL+LGTHTSGSEQNYLMVANVNLPV GAEIDNRTYDDEKGEMGGFGGVHGKV
Sbjct:  114 SLTVQWLPSVKSQESKDYAVHKLVLGTHTSGSEQNYLMVANVNLPVPGAEIDNRTYDDEKGEMGGFGGVHGKV 186
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BLAST of mRNA_H-paniculata_contig51140.12416.1 vs. uniprot
Match: A0A7S1XXN3_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XXN3_9STRA)

HSP 1 Score: 105 bits (262), Expect = 3.580e-25
Identity = 52/73 (71.23%), Postives = 60/73 (82.19%), Query Frame = 1 
Query:    1 SLTVQWLPSVKAQEDKDYAVHKLILGTHTSGSEQNYLMVANVNLPVAGAEIDNRTYDDEKGEMGGFGGVHGKV 219
            SLTVQW+P  +A + KD A HKLILGTHTSG E NYLM+A+V+LP+  AEID R YDDEKGE+GGFG VHGKV
Sbjct:   50 SLTVQWVPGSRAVQGKDVAEHKLILGTHTSG-EMNYLMLAHVHLPLPEAEIDARRYDDEKGEVGGFGAVHGKV 121
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BLAST of mRNA_H-paniculata_contig51140.12416.1 vs. uniprot
Match: A0A835ZEH9_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEH9_9STRA)

HSP 1 Score: 105 bits (261), Expect = 5.050e-25
Identity = 49/73 (67.12%), Postives = 55/73 (75.34%), Query Frame = 1 
Query:    1 SLTVQWLPSVKAQEDKDYAVHKLILGTHTSGSEQNYLMVANVNLPVAGAEIDNRTYDDEKGEMGGFGGVHGKV 219
            SLTVQWLP V +  DKDY  HKLILGTHT  +EQNYLM+A VNLP    EID R YDDE+ E+GGFGGV  K+
Sbjct:   55 SLTVQWLPDVSSLPDKDYETHKLILGTHTEQNEQNYLMIATVNLPKEDTEIDARKYDDERDEVGGFGGVDNKI 127
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BLAST of mRNA_H-paniculata_contig51140.12416.1 vs. uniprot
Match: A0A7S2XZP9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZP9_9STRA)

HSP 1 Score: 103 bits (256), Expect = 5.830e-25
Identity = 48/73 (65.75%), Postives = 58/73 (79.45%), Query Frame = 1 
Query:    1 SLTVQWLPSVKAQEDKDYAVHKLILGTHTSGSEQNYLMVANVNLPVAGAEIDNRTYDDEKGEMGGFGGVHGKV 219
            SLTVQWLP VK  E K +++H+ I+GTHTS SEQN+LMVA+VNLP+   E+D R Y DEK E+GGFGGV GKV
Sbjct:   53 SLTVQWLPDVKRPEGKTHSIHRFIVGTHTSNSEQNHLMVASVNLPLPDQELDVRKYHDEKNEIGGFGGVSGKV 125
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BLAST of mRNA_H-paniculata_contig51140.12416.1 vs. uniprot
Match: F2U3I1_SALR5 (Histone-binding protein RBBP4 n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U3I1_SALR5)

HSP 1 Score: 104 bits (260), Expect = 6.770e-25
Identity = 50/73 (68.49%), Postives = 55/73 (75.34%), Query Frame = 1 
Query:    1 SLTVQWLPSVKAQEDKDYAVHKLILGTHTSGSEQNYLMVANVNLPVAGAEIDNRTYDDEKGEMGGFGGVHGKV 219
            SLT QWLP V   E KDY+ H++ILGTHTSG E NYL+VANV LP + A ID R YDDEKGE GGFG V GKV
Sbjct:   49 SLTAQWLPDVTRPEGKDYSTHRIILGTHTSGDEPNYLIVANVQLPNSDATIDARKYDDEKGEYGGFGSVAGKV 121
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BLAST of mRNA_H-paniculata_contig51140.12416.1 vs. uniprot
Match: A0A7S3QKZ3_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3QKZ3_DUNTE)

HSP 1 Score: 103 bits (256), Expect = 2.180e-24
Identity = 46/73 (63.01%), Postives = 58/73 (79.45%), Query Frame = 1 
Query:    1 SLTVQWLPSVKAQEDKDYAVHKLILGTHTSGSEQNYLMVANVNLPVAGAEIDNRTYDDEKGEMGGFGGVHGKV 219
            SLT+QWLP+ + QE KD++  KLILGTHTS +EQNYLM+A V LP+  +E+D R Y+DE+GE GGFG  HGKV
Sbjct:   43 SLTIQWLPNKEVQEGKDFSKQKLILGTHTSDNEQNYLMIAEVQLPLEESELDARQYEDERGESGGFGSAHGKV 115
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BLAST of mRNA_H-paniculata_contig51140.12416.1 vs. uniprot
Match: A0A7S0Z940_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0Z940_9CHLO)

HSP 1 Score: 96.7 bits (239), Expect = 2.520e-24
Identity = 46/73 (63.01%), Postives = 51/73 (69.86%), Query Frame = 1 
Query:    1 SLTVQWLPSVKAQEDKDYAVHKLILGTHTSGSEQNYLMVANVNLPVAGAEIDNRTYDDEKGEMGGFGGVHGKV 219
            SLTVQWLP      DKDY+  K+ILGTHTS  EQNYLM+A V LP+  AE+D R YDDE GE GGFG    KV
Sbjct:    9 SLTVQWLPDRVEHPDKDYSTQKMILGTHTSEHEQNYLMIAEVQLPLENAEVDGREYDDESGEAGGFGSGGAKV 81
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BLAST of mRNA_H-paniculata_contig51140.12416.1 vs. uniprot
Match: A0A7S0JEK8_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JEK8_9EUKA)

HSP 1 Score: 103 bits (256), Expect = 2.730e-24
Identity = 46/73 (63.01%), Postives = 56/73 (76.71%), Query Frame = 1 
Query:    1 SLTVQWLPSVKAQEDKDYAVHKLILGTHTSGSEQNYLMVANVNLPVAGAEIDNRTYDDEKGEMGGFGGVHGKV 219
            SLTVQWLP  +   +KDY+VH+++LGTHTS  EQNYLM+A V LP+   EID R YDDE+GE GGFGGV  K+
Sbjct:   55 SLTVQWLPDKRLPPNKDYSVHRMVLGTHTSEGEQNYLMIAEVRLPLEDTEIDARKYDDERGEAGGFGGVSAKI 127
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BLAST of mRNA_H-paniculata_contig51140.12416.1 vs. uniprot
Match: A0A5D6XN28_9STRA (CAF1C_H4-bd domain-containing protein (Fragment) n=2 Tax=Pythiaceae TaxID=4782 RepID=A0A5D6XN28_9STRA)

HSP 1 Score: 102 bits (254), Expect = 5.320e-24
Identity = 48/73 (65.75%), Postives = 56/73 (76.71%), Query Frame = 1 
Query:    1 SLTVQWLPSVKAQEDKDYAVHKLILGTHTSGSEQNYLMVANVNLPVAGAEIDNRTYDDEKGEMGGFGGVHGKV 219
            SL+VQWLPS       DY+VHKL+LGTHTSGSEQN+LM+A V LP+   EID R +DDE  E+GGFGGV GKV
Sbjct:   52 SLSVQWLPSCHTSAGDDYSVHKLLLGTHTSGSEQNHLMIAEVRLPLEDTEIDARKFDDEAQELGGFGGVSGKV 124
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BLAST of mRNA_H-paniculata_contig51140.12416.1 vs. uniprot
Match: D8TN97_VOLCA (CAF1C_H4-bd domain-containing protein n=10 Tax=Chlamydomonadales TaxID=3042 RepID=D8TN97_VOLCA)

HSP 1 Score: 102 bits (253), Expect = 6.080e-24
Identity = 47/73 (64.38%), Postives = 56/73 (76.71%), Query Frame = 1 
Query:    1 SLTVQWLPSVKAQEDKDYAVHKLILGTHTSGSEQNYLMVANVNLPVAGAEIDNRTYDDEKGEMGGFGGVHGKV 219
            SLTVQWLP  +    KDY+  KLILGTHTS +EQNYLM+A V LP+  +E+D R YDDE+ E+GGFGG HGKV
Sbjct:   44 SLTVQWLPDKEIVPGKDYSKQKLILGTHTSDNEQNYLMIAEVQLPLEESELDGRGYDDERNEVGGFGGAHGKV 116
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig51140.12416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAT4_9PHAE4.750e-4094.52CAF1C_H4-bd domain-containing protein n=1 Tax=Ecto... [more]
A0A7S1XXN3_9STRA3.580e-2571.23Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A835ZEH9_9STRA5.050e-2567.12WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A7S2XZP9_9STRA5.830e-2565.75Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
F2U3I1_SALR56.770e-2568.49Histone-binding protein RBBP4 n=1 Tax=Salpingoeca ... [more]
A0A7S3QKZ3_DUNTE2.180e-2463.01Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]
A0A7S0Z940_9CHLO2.520e-2463.01Hypothetical protein (Fragment) n=1 Tax=Ostreococc... [more]
A0A7S0JEK8_9EUKA2.730e-2463.01Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A5D6XN28_9STRA5.320e-2465.75CAF1C_H4-bd domain-containing protein (Fragment) n... [more]
D8TN97_VOLCA6.080e-2464.38CAF1C_H4-bd domain-containing protein n=10 Tax=Chl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig51140contigH-paniculata_contig51140:150..368 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score104.4
Seed ortholog evalue2.3e-20
Seed eggNOG ortholog946362.XP_004996358.1
Preferred nameRBBP4
KEGG koko:K10752,ko:K11659
KEGG Pathwayko04218,map04218
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000070,GO:0000118,GO:0000122,GO:0000123,GO:0000228,GO:0000278,GO:0000280,GO:0000281,GO:0000302,GO:0000775,GO:0000776,GO:0000777,GO:0000778,GO:0000779,GO:0000780,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0000819,GO:0000910,GO:0000976,GO:0000977,GO:0000978,GO:0000987,GO:0001012,GO:0001067,GO:0001558,GO:0001708,GO:0002064,GO:0002065,GO:0002066,GO:0002244,GO:0002376,GO:0002520,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003824,GO:0004407,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005694,GO:0005700,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006277,GO:0006281,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006335,GO:0006336,GO:0006338,GO:0006342,GO:0006348,GO:0006351,GO:0006355,GO:0006357,GO:0006464,GO:0006473,GO:0006475,GO:0006476,GO:0006479,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0007059,GO:0007076,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007304,GO:0007306,GO:0007307,GO:0007346,GO:0007379,GO:0007389,GO:0007548,GO:0008150,GO:0008152,GO:0008213,GO:0008283,GO:0008284,GO:0008285,GO:0008406,GO:0009058,GO:0009059,GO:0009266,GO:0009408,GO:0009611,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009790,GO:0009792,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010286,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010570,GO:0010605,GO:0010629,GO:0010927,GO:0010948,GO:0014070,GO:0016043,GO:0016070,GO:0016458,GO:0016569,GO:0016570,GO:0016571,GO:0016573,GO:0016575,GO:0016580,GO:0016581,GO:0016584,GO:0016589,GO:0016787,GO:0016810,GO:0016811,GO:0017053,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019213,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019899,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0030097,GO:0030154,GO:0030261,GO:0030308,GO:0030703,GO:0030707,GO:0030855,GO:0031010,GO:0031055,GO:0031099,GO:0031101,GO:0031248,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031497,GO:0031519,GO:0031523,GO:0031974,GO:0031981,GO:0032221,GO:0032259,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032989,GO:0032991,GO:0033186,GO:0033554,GO:0033558,GO:0033698,GO:0033993,GO:0034080,GO:0034508,GO:0034599,GO:0034605,GO:0034614,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034708,GO:0034723,GO:0034724,GO:0034728,GO:0035035,GO:0035097,GO:0035098,GO:0035239,GO:0035282,GO:0035295,GO:0035601,GO:0036211,GO:0040007,GO:0040008,GO:0040029,GO:0040035,GO:0042060,GO:0042127,GO:0042221,GO:0042246,GO:0042393,GO:0042766,GO:0042802,GO:0042803,GO:0042826,GO:0043044,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043486,GO:0043543,GO:0043565,GO:0043687,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044703,GO:0045137,GO:0045138,GO:0045165,GO:0045786,GO:0045814,GO:0045892,GO:0045926,GO:0045934,GO:0046483,GO:0046661,GO:0046983,GO:0048285,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048545,GO:0048546,GO:0048557,GO:0048562,GO:0048565,GO:0048566,GO:0048568,GO:0048589,GO:0048598,GO:0048608,GO:0048609,GO:0048646,GO:0048731,GO:0048806,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051301,GO:0051382,GO:0051383,GO:0051704,GO:0051716,GO:0051726,GO:0055123,GO:0060255,GO:0060258,GO:0060429,GO:0061458,GO:0061640,GO:0061641,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070176,GO:0070210,GO:0070316,GO:0070317,GO:0070370,GO:0070603,GO:0070784,GO:0070785,GO:0070822,GO:0070887,GO:0070925,GO:0071103,GO:0071704,GO:0071824,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090545,GO:0090568,GO:0090571,GO:0090598,GO:0097159,GO:0097659,GO:0098654,GO:0098687,GO:0098732,GO:0098813,GO:0140014,GO:0140096,GO:1900428,GO:1900429,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901700,GO:1901701,GO:1902493,GO:1902494,GO:1902679,GO:1903047,GO:1903506,GO:1903507,GO:1904949,GO:1990234,GO:1990483,GO:1990837,GO:2000112,GO:2000113,GO:2000220,GO:2000221,GO:2001141
EggNOG free text desc.chromatin organization
EggNOG OGs38E9H@33154,KOG0264@1,KOG0264@2759
COG Functional cat.B
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Exons1
Model size219
Cds size219
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930499.6204572-CDS-H-paniculata_contig51140:149..3681622930499.6204572-CDS-H-paniculata_contig51140:149..368Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51140 150..368 +
1691481320.242855-CDS-H-paniculata_contig51140:149..3681691481320.242855-CDS-H-paniculata_contig51140:149..368Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51140 150..368 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig51140.12416.1prot_H-paniculata_contig51140.12416.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig51140 150..368 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig51140.12416.1

>prot_H-paniculata_contig51140.12416.1 ID=prot_H-paniculata_contig51140.12416.1|Name=mRNA_H-paniculata_contig51140.12416.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp
SLTVQWLPSVKAQEDKDYAVHKLILGTHTSGSEQNYLMVANVNLPVAGAE
IDNRTYDDEKGEMGGFGGVHGKV
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mRNA from alignment at H-paniculata_contig51140:150..368+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig51140.12416.1 ID=mRNA_H-paniculata_contig51140.12416.1|Name=mRNA_H-paniculata_contig51140.12416.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=219bp|location=Sequence derived from alignment at H-paniculata_contig51140:150..368+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCTTGACCGTACAATGGCTACCGTCCGTTAAGGCGCAAGAAGACAAGGA
TTACGCCGTGCACAAGCTCATCCTGGGAACTCATACCTCGGGATCTGAGC
AGAACTATCTCATGGTGGCGAACGTCAACTTACCCGTGGCGGGAGCGGAG
ATTGACAATCGAACTTACGATGACGAGAAGGGGGAGATGGGGGGCTTCGG
TGGCGTTCACGGCAAGGTT
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Coding sequence (CDS) from alignment at H-paniculata_contig51140:150..368+

>mRNA_H-paniculata_contig51140.12416.1 ID=mRNA_H-paniculata_contig51140.12416.1|Name=mRNA_H-paniculata_contig51140.12416.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at H-paniculata_contig51140:150..368+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCTTGACCGTACAATGGCTACCGTCCGTTAAGGCGCAAGAAGACAAGGA
TTACGCCGTGCACAAGCTCATCCTGGGAACTCATACCTCGGGATCTGAGC
AGAACTATCTCATGGTGGCGAACGTCAACTTACCCGTGGCGGGAGCGGAG
ATTGACAATCGAACTTACGATGACGAGAAGGGGGAGATGGGGGGCTTCGG
TGGCGTTCACGGCAAGGTTAGCTTGACCGTACAATGGCTACCGTCCGTTA
AGGCGCAAGAAGACAAGGATTACGCCGTGCACAAGCTCATCCTGGGAACT
CATACCTCGGGATCTGAGCAGAACTATCTCATGGTGGCGAACGTCAACTT
ACCCGTGGCGGGAGCGGAGATTGACAATCGAACTTACGATGACGAGAAGG
GGGAGATGGGGGGCTTCGGTGGCGTTCACGGCAAGGTT
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