mRNA_H-paniculata_contig5098.12386.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5098.12386.1
Unique NamemRNA_H-paniculata_contig5098.12386.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5098.12386.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5098contigH-paniculata_contig5098:5522..6182 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size262
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930493.9542036-CDS-H-paniculata_contig5098:5522..57071622930493.9542036-CDS-H-paniculata_contig5098:5522..5707Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5098 5523..5707 -
1691481317.3861985-CDS-H-paniculata_contig5098:5522..57071691481317.3861985-CDS-H-paniculata_contig5098:5522..5707Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5098 5523..5707 -
1622930493.971173-CDS-H-paniculata_contig5098:6106..61821622930493.971173-CDS-H-paniculata_contig5098:6106..6182Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5098 6107..6182 -
1691481317.3995285-CDS-H-paniculata_contig5098:6106..61821691481317.3995285-CDS-H-paniculata_contig5098:6106..6182Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5098 6107..6182 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5098.12386.1prot_H-paniculata_contig5098.12386.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5098 5523..6182 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5098.12386.1

>prot_H-paniculata_contig5098.12386.1 ID=prot_H-paniculata_contig5098.12386.1|Name=mRNA_H-paniculata_contig5098.12386.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=87bp
IISLRRTTHGRAGVAAAGGRVTRLQGARTRGDVSGAAAASGGSNSKRRSS
SSAAVAPTESETSPAAEATSTRRPKAPKKVAMVGAEA
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mRNA from alignment at H-paniculata_contig5098:5522..6182-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5098.12386.1 ID=mRNA_H-paniculata_contig5098.12386.1|Name=mRNA_H-paniculata_contig5098.12386.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=661bp|location=Sequence derived from alignment at H-paniculata_contig5098:5522..6182- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTATCTCGTTGCGGAGAACGACACATGGGCGTGCGGGGGTAGCGGCGGC
AGGGGGGCGCGTCACACGTTTACAAGGCGAGCGGAACGTTTACCCTTTAT
TGGCCGCGCGATGTATTATTTGAAATCTTCAGCCACACGCTGTAGATTTT
TGTATAGAGCTACCTGTACACTTATACCCCAGGAGTAAATACATACGAAT
GAAGCGCTCAGTCGCGGGTATCAACCCTCAACTAGCCCCGCTGTGGTCAT
CAAAGCGCACACACACGCGGCTAGGGTTTTCTAAATTGAGCAGTTTGTCG
AGTACAGCATGTTTTCCTTGTCCTTGTTTACCCAACCGATGCAATTGCGC
TCGCACTACAATATATGTGCGGGGAGATAGAGGGTTCCGTAACGAATGTA
TCGCTTAATTCCGAAACGATAGATAATCTGGGACCTCCCTACCCCTCCTG
GATCTGCTTATCGACAATGCAGCAGGCGCTCGCACTAGGGGAGACGTCTC
GGGCGCAGCCGCCGCGAGCGGCGGTAGTAACAGCAAGCGTAGGTCATCTT
CATCCGCTGCCGTCGCGCCTACAGAGAGCGAAACGTCCCCTGCAGCCGAA
GCCACTAGCACCCGGCGGCCCAAGGCCCCAAAGAAAGTGGCGATGGTGGG
GGCCGAAGCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig5098:5522..6182-

>mRNA_H-paniculata_contig5098.12386.1 ID=mRNA_H-paniculata_contig5098.12386.1|Name=mRNA_H-paniculata_contig5098.12386.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at H-paniculata_contig5098:5522..6182- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTATCTCGTTGCGGAGAACGACACATGGGCGTGCGGGGGTAGCGGCGGC
AGGGGGGCGCGTCACACGTTTACAAGATTATCTCGTTGCGGAGAACGACA
CATGGGCGTGCGGGGGTAGCGGCGGCAGGGGGGCGCGTCACACGTTTACA
AGGCGCTCGCACTAGGGGAGACGTCTCGGGCGCAGCCGCCGCGAGCGGCG
GTAGTAACAGCAAGCGTAGGTCATCTTCATCCGCTGCCGTCGCGCCTACA
GAGAGCGAAACGTCCCCTGCAGCCGAAGCCACTAGCACCCGGCGGCCCAA
GGCCCCAAAGAAAGTGGCGATGGTGGGGGCCGAAGCGGCGCTCGCACTAG
GGGAGACGTCTCGGGCGCAGCCGCCGCGAGCGGCGGTAGTAACAGCAAGC
GTAGGTCATCTTCATCCGCTGCCGTCGCGCCTACAGAGAGCGAAACGTCC
CCTGCAGCCGAAGCCACTAGCACCCGGCGGCCCAAGGCCCCAAAGAAAGT
GGCGATGGTGGGGGCCGAAGCG
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