mRNA_H-paniculata_contig50907.12378.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig50907.12378.1
Unique NamemRNA_H-paniculata_contig50907.12378.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig50907.12378.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig50907contigH-paniculata_contig50907:455..1292 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size839
Cds size624
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930493.0333905-UTR-H-paniculata_contig50907:454..6681622930493.0333905-UTR-H-paniculata_contig50907:454..668Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig50907 455..668 +
1691481316.973823-UTR-H-paniculata_contig50907:454..6681691481316.973823-UTR-H-paniculata_contig50907:454..668Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig50907 455..668 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930493.0532718-CDS-H-paniculata_contig50907:668..12921622930493.0532718-CDS-H-paniculata_contig50907:668..1292Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50907 669..1292 +
1691481316.988312-CDS-H-paniculata_contig50907:668..12921691481316.988312-CDS-H-paniculata_contig50907:668..1292Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50907 669..1292 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig50907.12378.1prot_H-paniculata_contig50907.12378.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig50907 669..1292 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig50907.12378.1

>prot_H-paniculata_contig50907.12378.1 ID=prot_H-paniculata_contig50907.12378.1|Name=mRNA_H-paniculata_contig50907.12378.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=208bp
MKRTKIIHYCTRFQTLPKNSKALHNTEHSICIFSILMFSTGSAWVVGHIK
TELFQTQFFREKRRFTADSTHPSRALDKIFSTVQFIAPRKKLTTRKSSCN
KATFCTRLLDMTKHRTDFHYASLVCAAERGLSSELVHMSELLSGCCLGTL
WGLCFSVRSFLQPASCNHFYIFLTPGRLRQKPLPMLPYSSILPKDVYISF
NRREPFIP
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mRNA from alignment at H-paniculata_contig50907:455..1292+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig50907.12378.1 ID=mRNA_H-paniculata_contig50907.12378.1|Name=mRNA_H-paniculata_contig50907.12378.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=838bp|location=Sequence derived from alignment at H-paniculata_contig50907:455..1292+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAGAGGGCACGATCGGGTTGCGTTCAGCGCACCGTATACTCAAGAGGAA
TAAGAAATTCAGAAAGAGTAGTTTTGGATCGCCCAAGCTGGAAACATGCG
TTCACGGTGCCGTTCCGTCCATGTACAACGGAGTTTTGGATCGAAGGCAT
AAGAGACGTAACGCACATGACAGCATGAAAACGCAATAATCGAGAGGGGA
AAGATCGTAAAAAAATGAAAAGAACGAAAATCATACACTACTGTACAAGA
TTTCAGACACTACCCAAAAATTCCAAGGCTCTTCACAACACCGAGCATTC
CATATGTATTTTTAGTATCCTCATGTTTTCAACCGGTTCGGCATGGGTTG
TTGGTCATATAAAAACTGAACTTTTTCAAACCCAATTTTTTCGAGAAAAA
AGGCGCTTTACAGCAGACAGCACACATCCATCTAGAGCTCTCGACAAGAT
CTTTTCAACAGTACAATTTATAGCGCCACGAAAGAAATTGACTACGCGAA
AATCGAGTTGCAACAAAGCAACATTTTGCACACGACTTTTGGACATGACC
AAACACAGAACAGACTTCCATTACGCAAGCCTGGTGTGTGCAGCTGAGCG
AGGGCTGTCGTCAGAGTTAGTGCACATGTCCGAGCTTCTCTCTGGGTGTT
GTCTTGGGACTCTGTGGGGGTTGTGTTTCTCAGTCCGTTCTTTTCTACAA
CCTGCTTCATGCAATCATTTCTATATATTTTTAACCCCCGGAAGGCTGAG
GCAAAAACCTTTACCGATGCTTCCATACTCAAGTATTTTACCAAAGGATG
TCTACATTTCCTTTAACAGAAGAGAGCCTTTTATTCCT
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Coding sequence (CDS) from alignment at H-paniculata_contig50907:455..1292+

>mRNA_H-paniculata_contig50907.12378.1 ID=mRNA_H-paniculata_contig50907.12378.1|Name=mRNA_H-paniculata_contig50907.12378.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1248bp|location=Sequence derived from alignment at H-paniculata_contig50907:455..1292+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAAGAACGAAAATCATACACTACTGTACAAGATTTCAGACACTACC
CAAAAATTCCAAGGCTCTTCACAACACCGAGCATTCCATATGTATTTTTA
GTATCCTCATGTTTTCAACCGGTTCGGCATGGGTTGTTGGTCATATAAAA
ACTGAACTTTTTCAAACCCAATTTTTTCGAGAAAAAAGGCGCTTTACAGC
AGACAGCACACATCCATCTAGAGCTCTCGACAAGATCTTTTCAACAGTAC
AATTTATAGCGCCACGAAAGAAATTGACTACGCGAAAATCGAGTTGCAAC
AAAGCAACATTTTGCACACGACTTTTGGACATGACCAAACACAGAACAGA
CTTCCATTACGCAAGCCTGGTGTGTGCAGCTGAGCGAGGGCTGTCGTCAG
AGTTAGTGCACATGTCCGAGCTTCTCTCTGGGTGTTGTCTTGGGACTCTG
TGGGGGTTGTGTTTCTCAGTCCGTTCTTTTCTACAACCTGCTTCATGCAA
TCATTTCTATATATTTTTAACCCCCGGAAGGCTGAGGCAAAAACCTTTAC
CGATGCTTCCATACTCAAGTATTTTACCAAAGGATGTCTACATTTCCTTT
AACAGAAGAGAGCCTTTTATTCCTATGAAAAGAACGAAAATCATACACTA
CTGTACAAGATTTCAGACACTACCCAAAAATTCCAAGGCTCTTCACAACA
CCGAGCATTCCATATGTATTTTTAGTATCCTCATGTTTTCAACCGGTTCG
GCATGGGTTGTTGGTCATATAAAAACTGAACTTTTTCAAACCCAATTTTT
TCGAGAAAAAAGGCGCTTTACAGCAGACAGCACACATCCATCTAGAGCTC
TCGACAAGATCTTTTCAACAGTACAATTTATAGCGCCACGAAAGAAATTG
ACTACGCGAAAATCGAGTTGCAACAAAGCAACATTTTGCACACGACTTTT
GGACATGACCAAACACAGAACAGACTTCCATTACGCAAGCCTGGTGTGTG
CAGCTGAGCGAGGGCTGTCGTCAGAGTTAGTGCACATGTCCGAGCTTCTC
TCTGGGTGTTGTCTTGGGACTCTGTGGGGGTTGTGTTTCTCAGTCCGTTC
TTTTCTACAACCTGCTTCATGCAATCATTTCTATATATTTTTAACCCCCG
GAAGGCTGAGGCAAAAACCTTTACCGATGCTTCCATACTCAAGTATTTTA
CCAAAGGATGTCTACATTTCCTTTAACAGAAGAGAGCCTTTTATTCCT
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