mRNA_H-paniculata_contig50766.12358.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig50766.12358.1
Unique NamemRNA_H-paniculata_contig50766.12358.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig50766.12358.1 vs. uniprot
Match: D1J7C1_ECTSI (Uncharacterized protein ycf34 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J7C1_ECTSI)

HSP 1 Score: 199 bits (507), Expect = 3.920e-65
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 
Query:    1 MCICLNCDRINSCHIYFLIEKQHQETKKDVEKSFSPQAPVLLCLNFFSKQGIYLLEWDVNECLSYQEKPGNWLGYQQKNLNLSSYLVFDLLF 276
            MCICLNCDRINSCHIYFLIEKQHQETKKDVEKSFSPQAPVLLCLNFFSKQGIYLLEWDVNECLSYQEKPGNWLGYQQKNLNLSSYLVFDLLF
Sbjct:    1 MCICLNCDRINSCHIYFLIEKQHQETKKDVEKSFSPQAPVLLCLNFFSKQGIYLLEWDVNECLSYQEKPGNWLGYQQKNLNLSSYLVFDLLF 92
[Close]
BLAST of mRNA_H-paniculata_contig50766.12358.1 vs. uniprot
Match: A0A6B7F232_9PHAE (Uncharacterized protein n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7F232_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 3.960e-47
Identity = 66/92 (71.74%), Postives = 80/92 (86.96%), Query Frame = 1 
Query:    1 MCICLNCDRINSCHIYFLIEKQHQETKKDVEKSFSPQAPVLLCLNFFSKQGIYLLEWDVNECLSYQEKPGNWLGYQQKNLNLSSYLVFDLLF 276
            MCICLNC RIN C +YFLIE+QHQE  K  +K FSPQAP+L C+NFFSK+ +YLLEWDVNECLSY+EKPG+WLG +QK L++SSYL+FD+LF
Sbjct:    1 MCICLNCARINGCRVYFLIEQQHQEMIKGTDKYFSPQAPILFCINFFSKKSLYLLEWDVNECLSYEEKPGSWLGGEQKRLSVSSYLLFDILF 92
[Close]
BLAST of mRNA_H-paniculata_contig50766.12358.1 vs. uniprot
Match: A0A344PFD3_9PHAE (Uncharacterized protein n=1 Tax=Endarachne binghamiae TaxID=698476 RepID=A0A344PFD3_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 3.260e-46
Identity = 68/92 (73.91%), Postives = 77/92 (83.70%), Query Frame = 1 
Query:    1 MCICLNCDRINSCHIYFLIEKQHQETKKDVEKSFSPQAPVLLCLNFFSKQGIYLLEWDVNECLSYQEKPGNWLGYQQKNLNLSSYLVFDLLF 276
            MCICLNCDRINSC +Y +IE+QHQE  K   K FSPQAP+LLC+NFFSK+ +Y LEWDVNECLSYQEKPG+WL   QK LN SSYL+FDLLF
Sbjct:    1 MCICLNCDRINSCRVYSIIEQQHQEKLKCQTKPFSPQAPILLCINFFSKKRLYTLEWDVNECLSYQEKPGSWLESNQKRLNFSSYLLFDLLF 92
[Close]
BLAST of mRNA_H-paniculata_contig50766.12358.1 vs. uniprot
Match: A0A1I9LVZ6_9PHAE (Uncharacterized protein n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVZ6_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 4.630e-46
Identity = 65/92 (70.65%), Postives = 78/92 (84.78%), Query Frame = 1 
Query:    1 MCICLNCDRINSCHIYFLIEKQHQETKKDVEKSFSPQAPVLLCLNFFSKQGIYLLEWDVNECLSYQEKPGNWLGYQQKNLNLSSYLVFDLLF 276
            MCICLNCDRIN C +YF+IE+QHQE  K ++KSFSPQ P+L+CLNFF K+ +Y++EWDVNECLSYQEKPG+WL   QK L  SSYL+FDLLF
Sbjct:    1 MCICLNCDRINKCRLYFIIEEQHQEKIKGLKKSFSPQGPILVCLNFFFKKRLYIIEWDVNECLSYQEKPGSWLDRNQKKLKFSSYLLFDLLF 92
[Close]
BLAST of mRNA_H-paniculata_contig50766.12358.1 vs. uniprot
Match: A0A5A4MIQ9_9PHAE (Uncharacterized protein n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A5A4MIQ9_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 3.770e-43
Identity = 63/92 (68.48%), Postives = 76/92 (82.61%), Query Frame = 1 
Query:    1 MCICLNCDRINSCHIYFLIEKQHQETKKDVEKSFSPQAPVLLCLNFFSKQGIYLLEWDVNECLSYQEKPGNWLGYQQKNLNLSSYLVFDLLF 276
            MCICLNCDRIN C +Y +IE+QH+E  K   K FSPQAP+LLC+NFFSK+ +Y LEWDV+ECLSYQEKPG+WL   +K+LN SSYL+FDL F
Sbjct:    1 MCICLNCDRINRCRVYSIIEQQHKEKMKCQTKPFSPQAPILLCINFFSKKRLYALEWDVSECLSYQEKPGSWLESNKKSLNFSSYLLFDLFF 92
[Close]
BLAST of mRNA_H-paniculata_contig50766.12358.1 vs. uniprot
Match: A0A0R6M4S6_UNDPI (Conserved hypothetical plastid protein n=9 Tax=Alariaceae TaxID=2887 RepID=A0A0R6M4S6_UNDPI)

HSP 1 Score: 140 bits (354), Expect = 9.430e-42
Identity = 60/95 (63.16%), Postives = 78/95 (82.11%), Query Frame = 1 
Query:    1 MCICLNCDRINSCHIYFLIEKQHQETKKDV---EKSFSPQAPVLLCLNFFSKQGIYLLEWDVNECLSYQEKPGNWLGYQQKNLNLSSYLVFDLLF 276
            MCICLNC RI++C +YF++E++H E KK+    +++F PQ+P LLC+NFFSK+ +YLLEWDVNECLSYQEKP +WL + QKN   SSYL+FDLLF
Sbjct:    1 MCICLNCGRIDNCEVYFIVEQKHNEKKKNYYTKKRTFFPQSPTLLCINFFSKKNVYLLEWDVNECLSYQEKPASWLSFNQKNARNSSYLLFDLLF 95
[Close]
BLAST of mRNA_H-paniculata_contig50766.12358.1 vs. uniprot
Match: A0A7U1AQL9_9PHAE (Conserved hypothetical plastid protein n=2 Tax=Laminaria TaxID=33637 RepID=A0A7U1AQL9_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 1.210e-40
Identity = 58/94 (61.70%), Postives = 77/94 (81.91%), Query Frame = 1 
Query:    1 MCICLNCDRINSCHIYFLIEKQHQETKKDVEKS--FSPQAPVLLCLNFFSKQGIYLLEWDVNECLSYQEKPGNWLGYQQKNLNLSSYLVFDLLF 276
            MCICLNC+RI++C +Y ++E++H E KK  +K+  F PQ+P LLC+NFFSK+ +Y++EWDVNECLSYQEKPG+W+ + QKN   SSYL FDLLF
Sbjct:    1 MCICLNCNRIDNCEVYLIVEQKHNEKKKSKKKNRPFFPQSPTLLCINFFSKKNLYIIEWDVNECLSYQEKPGSWMSFHQKNSRHSSYLSFDLLF 94
[Close]
BLAST of mRNA_H-paniculata_contig50766.12358.1 vs. uniprot
Match: A0A8F0F920_9PHAE (Uncharacterized protein n=1 Tax=Laminaria ephemera TaxID=309364 RepID=A0A8F0F920_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 1.520e-40
Identity = 60/94 (63.83%), Postives = 77/94 (81.91%), Query Frame = 1 
Query:    1 MCICLNCDRINSCHIYFLIEKQHQETKKDVEKS--FSPQAPVLLCLNFFSKQGIYLLEWDVNECLSYQEKPGNWLGYQQKNLNLSSYLVFDLLF 276
            MCICLNC+RI++C +Y ++E++H E KK  +K+  F PQ+P LLC+NFFSK+ +YLLEWDVNECLSYQEKPG+W+ + QKN   SSYL FDLLF
Sbjct:    1 MCICLNCNRIDNCEVYSIVEQKHNEKKKYQKKTRQFFPQSPTLLCINFFSKKKLYLLEWDVNECLSYQEKPGSWMSFNQKNFQHSSYLSFDLLF 94
[Close]
BLAST of mRNA_H-paniculata_contig50766.12358.1 vs. uniprot
Match: A0A516ICQ1_9PHAE (Conserved hypothetical plastid protein n=2 Tax=Lessonia TaxID=105411 RepID=A0A516ICQ1_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 2.160e-40
Identity = 61/94 (64.89%), Postives = 76/94 (80.85%), Query Frame = 1 
Query:    1 MCICLNCDRINSCHIYFLIEKQHQETKKDVEKS--FSPQAPVLLCLNFFSKQGIYLLEWDVNECLSYQEKPGNWLGYQQKNLNLSSYLVFDLLF 276
            MCICLNC+RI++C IYF++E++H E KK  +K   F PQ+P LLC+NFFSK+ +YL EWDVNECLSYQEKPG+W+ + QKN   SSYL FDLLF
Sbjct:    1 MCICLNCNRIDNCEIYFIVEQKHNEKKKYHKKKRPFFPQSPTLLCINFFSKRKLYLSEWDVNECLSYQEKPGSWMSFSQKNSRHSSYLSFDLLF 94
[Close]
BLAST of mRNA_H-paniculata_contig50766.12358.1 vs. uniprot
Match: A0A8F0F8L8_MACPY (Uncharacterized protein n=2 Tax=Macrocystis TaxID=35121 RepID=A0A8F0F8L8_MACPY)

HSP 1 Score: 137 bits (345), Expect = 2.220e-40
Identity = 61/95 (64.21%), Postives = 75/95 (78.95%), Query Frame = 1 
Query:    1 MCICLNCDRINSCHIYFLIEKQHQETKKDVEKS--FSPQAPVLLCLNFFSKQGIYLLEWDVNECLSYQEKPGNWLGYQQKNLNL-SSYLVFDLLF 276
            MCICLNC+RI +C +YF++E++H E K    K   F PQ+P LLC+NFFSK+ +YLLEWDVNECLSYQEKPGNW+G+ QKN +  SSYL FDL F
Sbjct:    1 MCICLNCNRITNCEVYFIVEQKHNEKKNHYTKKNPFFPQSPTLLCINFFSKKNLYLLEWDVNECLSYQEKPGNWMGFNQKNRSKESSYLSFDLFF 95
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig50766.12358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J7C1_ECTSI3.920e-65100.00Uncharacterized protein ycf34 n=2 Tax=Ectocarpus s... [more]
A0A6B7F232_9PHAE3.960e-4771.74Uncharacterized protein n=1 Tax=Cladosiphon okamur... [more]
A0A344PFD3_9PHAE3.260e-4673.91Uncharacterized protein n=1 Tax=Endarachne bingham... [more]
A0A1I9LVZ6_9PHAE4.630e-4670.65Uncharacterized protein n=1 Tax=Pleurocladia lacus... [more]
A0A5A4MIQ9_9PHAE3.770e-4368.48Uncharacterized protein n=4 Tax=Scytosiphonaceae T... [more]
A0A0R6M4S6_UNDPI9.430e-4263.16Conserved hypothetical plastid protein n=9 Tax=Ala... [more]
A0A7U1AQL9_9PHAE1.210e-4061.70Conserved hypothetical plastid protein n=2 Tax=Lam... [more]
A0A8F0F920_9PHAE1.520e-4063.83Uncharacterized protein n=1 Tax=Laminaria ephemera... [more]
A0A516ICQ1_9PHAE2.160e-4064.89Conserved hypothetical plastid protein n=2 Tax=Les... [more]
A0A8F0F8L8_MACPY2.220e-4064.21Uncharacterized protein n=2 Tax=Macrocystis TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig50766contigH-paniculata_contig50766:193..471 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score62.8
Seed ortholog evalue9.9e-08
Seed eggNOG ortholog391612.CY0110_03934
Preferred nameycf34
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Hypothetical chloroplast protein Ycf34
EggNOG OGs1G7TV@1117,2CIZY@1,32S8W@2,3KIJ3@43988
COG Functional cat.S
Best tax levelCyanothece
Best eggNOG OGNA|NA|NA
Exons1
Model size279
Cds size279
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930490.695819-CDS-H-paniculata_contig50766:192..4711622930490.695819-CDS-H-paniculata_contig50766:192..471Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50766 193..471 +
1691481315.89077-CDS-H-paniculata_contig50766:192..4711691481315.89077-CDS-H-paniculata_contig50766:192..471Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50766 193..471 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig50766.12358.1prot_H-paniculata_contig50766.12358.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig50766 193..471 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig50766.12358.1

>prot_H-paniculata_contig50766.12358.1 ID=prot_H-paniculata_contig50766.12358.1|Name=mRNA_H-paniculata_contig50766.12358.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=93bp
MCICLNCDRINSCHIYFLIEKQHQETKKDVEKSFSPQAPVLLCLNFFSKQ
GIYLLEWDVNECLSYQEKPGNWLGYQQKNLNLSSYLVFDLLF*
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mRNA from alignment at H-paniculata_contig50766:193..471+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig50766.12358.1 ID=mRNA_H-paniculata_contig50766.12358.1|Name=mRNA_H-paniculata_contig50766.12358.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=279bp|location=Sequence derived from alignment at H-paniculata_contig50766:193..471+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGTATTTGTTTAAATTGTGACCGCATAAATAGTTGCCATATTTATTT
TCTTATTGAAAAACAACATCAAGAAACAAAAAAAGATGTAGAAAAATCTT
TTTCTCCTCAAGCTCCGGTTTTATTATGTTTAAATTTTTTCTCTAAACAA
GGGATATATCTTTTAGAGTGGGATGTGAATGAATGTTTATCATATCAAGA
AAAACCAGGTAATTGGTTAGGTTATCAACAAAAAAATCTAAATTTATCAT
CTTATTTAGTGTTTGATTTATTATTTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig50766:193..471+

>mRNA_H-paniculata_contig50766.12358.1 ID=mRNA_H-paniculata_contig50766.12358.1|Name=mRNA_H-paniculata_contig50766.12358.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at H-paniculata_contig50766:193..471+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGTATTTGTTTAAATTGTGACCGCATAAATAGTTGCCATATTTATTT
TCTTATTGAAAAACAACATCAAGAAACAAAAAAAGATGTAGAAAAATCTT
TTTCTCCTCAAGCTCCGGTTTTATTATGTTTAAATTTTTTCTCTAAACAA
GGGATATATCTTTTAGAGTGGGATGTGAATGAATGTTTATCATATCAAGA
AAAACCAGGTAATTGGTTAGGTTATCAACAAAAAAATCTAAATTTATCAT
CTTATTTAGTGTTTGATTTATTATTTTAAATGTGTATTTGTTTAAATTGT
GACCGCATAAATAGTTGCCATATTTATTTTCTTATTGAAAAACAACATCA
AGAAACAAAAAAAGATGTAGAAAAATCTTTTTCTCCTCAAGCTCCGGTTT
TATTATGTTTAAATTTTTTCTCTAAACAAGGGATATATCTTTTAGAGTGG
GATGTGAATGAATGTTTATCATATCAAGAAAAACCAGGTAATTGGTTAGG
TTATCAACAAAAAAATCTAAATTTATCATCTTATTTAGTGTTTGATTTAT
TATTTTAA
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