mRNA_H-paniculata_contig50705.12349.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig50705.12349.1 vs. uniprot
Match: A0A1X7VXK3_AMPQE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VXK3_AMPQE) HSP 1 Score: 61.6 bits (148), Expect = 4.790e-10 Identity = 34/71 (47.89%), Postives = 45/71 (63.38%), Query Frame = 1
Query: 1 EPKNYRETQASPEWEHWQTAEEIEMQGLIDNGVWTQVEHPKNKLVVSTMMIYKRKISKDGKMERYKCRLVA 213
EP E +S E + W+ A E EM+ L N V+ VE PKNK V+ + I++RKI+ DG +ERYK RLVA
Sbjct: 5 EPSTINEALSSSEADKWKEAMEREMESLKANDVYDLVELPKNKEVIGSKWIFRRKINADGSVERYKARLVA 75
BLAST of mRNA_H-paniculata_contig50705.12349.1 vs. uniprot
Match: UPI0015A81C6A (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015A81C6A) HSP 1 Score: 60.1 bits (144), Expect = 1.210e-9 Identity = 30/71 (42.25%), Postives = 44/71 (61.97%), Query Frame = 1
Query: 1 EPKNYRETQASPEWEHWQTAEEIEMQGLIDNGVWTQVEHPKNKLVVSTMMIYKRKISKDGKMERYKCRLVA 213
+P+ E SP+ E W+ A E E++ L N W V P+ + VV ++KRK++KDG++ERYK RLVA
Sbjct: 30 DPETLEEALTSPDAEKWKLAMEEELENLKRNETWDIVPRPEGRKVVKCKWVFKRKLNKDGQVERYKARLVA 100
BLAST of mRNA_H-paniculata_contig50705.12349.1 vs. uniprot
Match: A0A182HAC3_AEDAL (Integrase catalytic domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182HAC3_AEDAL) HSP 1 Score: 60.8 bits (146), Expect = 3.920e-9 Identity = 30/71 (42.25%), Postives = 43/71 (60.56%), Query Frame = 1
Query: 1 EPKNYRETQASPEWEHWQTAEEIEMQGLIDNGVWTQVEHPKNKLVVSTMMIYKRKISKDGKMERYKCRLVA 213
EP Y E S E E W A E Q LIDN W V+ P ++ ++ + ++KRK++ DGK++R+K RLVA
Sbjct: 349 EPTTYEEAVGSEEKEKWIKAMSEEYQSLIDNDTWELVDPPTDRNIIGSRWVFKRKLNADGKVDRFKARLVA 419
BLAST of mRNA_H-paniculata_contig50705.12349.1 vs. uniprot
Match: A0A2P4X8M5_9STRA (Putative Pol Polyprotein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X8M5_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 5.190e-9 Identity = 29/71 (40.85%), Postives = 42/71 (59.15%), Query Frame = 1
Query: 1 EPKNYRETQASPEWEHWQTAEEIEMQGLIDNGVWTQVEHPKNKLVVSTMMIYKRKISKDGKMERYKCRLVA 213
+PKNYRE P E W+ A E++ L N W + P+N ++ + +YK KI DG++ERY+ RLVA
Sbjct: 18 DPKNYREAMRDPRVEKWKEAMRTEIEALEHNDTWEVIVKPRNAKLLHSKWVYKLKIYADGRVERYRARLVA 88
BLAST of mRNA_H-paniculata_contig50705.12349.1 vs. uniprot
Match: A0A0J7K690_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K690_LASNI) HSP 1 Score: 59.3 bits (142), Expect = 1.370e-8 Identity = 30/70 (42.86%), Postives = 41/70 (58.57%), Query Frame = 1
Query: 1 EPKNYRETQASPEWEHWQTAEEIEMQGLIDNGVWTQVEHPKNKLVVSTMMIYKRKISKDGKMERYKCRLV 210
EP+ Y E AS E E W+ A E E LI N WT+ + P + ++ +I+K+K DGK+ RYK RLV
Sbjct: 564 EPQTYEEAMASNEVEQWRRAIEEEESALIKNNTWTKTKLPTGRKAITAKIIFKKKRDADGKVHRYKARLV 633
BLAST of mRNA_H-paniculata_contig50705.12349.1 vs. uniprot
Match: UPI0015ACB7EE (BRO1 domain-containing protein BROX-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015ACB7EE) HSP 1 Score: 56.6 bits (135), Expect = 1.070e-7 Identity = 28/61 (45.90%), Postives = 40/61 (65.57%), Query Frame = 1
Query: 31 SPEWEHWQTAEEIEMQGLIDNGVWTQVEHPKNKLVVSTMMIYKRKISKDGKMERYKCRLVA 213
SPE E W+ A E E++ L N W V P+ + V+ ++KRK++KDG++ERYK RLVA
Sbjct: 198 SPEAEKWKLAMEEELENLKQNETWDFVPRPEERNVMKCKWVFKRKLNKDGQVERYKIRLVA 258
BLAST of mRNA_H-paniculata_contig50705.12349.1 vs. uniprot
Match: A0A2I0VGA3_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0VGA3_9ASPA) HSP 1 Score: 55.5 bits (132), Expect = 3.140e-7 Identity = 28/70 (40.00%), Postives = 40/70 (57.14%), Query Frame = 1
Query: 4 PKNYRETQASPEWEHWQTAEEIEMQGLIDNGVWTQVEHPKNKLVVSTMMIYKRKISKDGKMERYKCRLVA 213
P+ Y++ + + HWQ A E Q L G W V HP NK ++ YK+K+ +GK++RYK RLVA
Sbjct: 858 PRTYKQ---AAQIHHWQKAMLDEFQALTKQGTWILVPHPPNKPILGCKWTYKKKVLPNGKLDRYKARLVA 924
BLAST of mRNA_H-paniculata_contig50705.12349.1 vs. uniprot
Match: A0A2N5SCW9_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Puccinia coronata f. sp. avenae TaxID=200324 RepID=A0A2N5SCW9_9BASI) HSP 1 Score: 55.1 bits (131), Expect = 4.310e-7 Identity = 24/70 (34.29%), Postives = 42/70 (60.00%), Query Frame = 1
Query: 4 PKNYRETQASPEWEHWQTAEEIEMQGLIDNGVWTQVEHPKNKLVVSTMMIYKRKISKDGKMERYKCRLVA 213
PK YR +SPE W +A ++E+ ++ GVWT V P N ++ T+ ++++K +G + ++K RL A
Sbjct: 856 PKTYRSAMSSPEAAEWSSAIKLELDAMVQLGVWTVVPIPSNHHLLGTIWVFRKKYDANGNLMKFKARLCA 925
BLAST of mRNA_H-paniculata_contig50705.12349.1 vs. uniprot
Match: A0A1X7TFD5_AMPQE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7TFD5_AMPQE) HSP 1 Score: 52.0 bits (123), Expect = 5.290e-7 Identity = 25/48 (52.08%), Postives = 35/48 (72.92%), Query Frame = 1
Query: 70 EMQGLIDNGVWTQVEHPKNKLVVSTMMIYKRKISKDGKMERYKCRLVA 213
E + L +N VW VE PK++ VV + ++KRKI ++GK+ERYK RLVA
Sbjct: 4 EFESLEENQVWDLVELPKDRRVVGSKWVFKRKIGENGKVERYKARLVA 51
BLAST of mRNA_H-paniculata_contig50705.12349.1 vs. uniprot
Match: UPI00195390E8 (uncharacterized protein LOC120416629 n=1 Tax=Culex pipiens pallens TaxID=42434 RepID=UPI00195390E8) HSP 1 Score: 54.3 bits (129), Expect = 8.170e-7 Identity = 28/71 (39.44%), Postives = 41/71 (57.75%), Query Frame = 1
Query: 1 EPKNYRETQASPEWEHWQTAEEIEMQGLIDNGVWTQVEHPKNKLVVSTMMIYKRKISKDGKMERYKCRLVA 213
EP+ Y E ASP+ E W+ A E++ + N WT V+ P + V + +YK K DG++ R+K RLVA
Sbjct: 3939 EPRTYAEAMASPDAERWKQAMVDELESIKANETWTLVDLPPGRKAVGSKWVYKIKRDADGRVLRFKARLVA 4009 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig50705.12349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig50705.12349.1 >prot_H-paniculata_contig50705.12349.1 ID=prot_H-paniculata_contig50705.12349.1|Name=mRNA_H-paniculata_contig50705.12349.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp EPKNYRETQASPEWEHWQTAEEIEMQGLIDNGVWTQVEHPKNKLVVSTMMback to top mRNA from alignment at H-paniculata_contig50705:233..445- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig50705.12349.1 ID=mRNA_H-paniculata_contig50705.12349.1|Name=mRNA_H-paniculata_contig50705.12349.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=213bp|location=Sequence derived from alignment at H-paniculata_contig50705:233..445- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig50705:233..445- >mRNA_H-paniculata_contig50705.12349.1 ID=mRNA_H-paniculata_contig50705.12349.1|Name=mRNA_H-paniculata_contig50705.12349.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at H-paniculata_contig50705:233..445- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |