mRNA_H-paniculata_contig50691.12346.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig50691.12346.1 vs. uniprot
Match: A0A6H5KC04_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC04_9PHAE) HSP 1 Score: 134 bits (337), Expect = 3.840e-35 Identity = 70/189 (37.04%), Postives = 113/189 (59.79%), Query Frame = 1
Query: 4 RFMANPLPVHMGSVKRILRYLKGAPNLKIAYSRDFNFELTGFCDASYGTGDPEKASSISGSIYFLSGGVVHFNSSFRKTTAQSITMAELVAMSTCAKQRIYLSSILGELGWKNFRSVRIFCDNKGALLLAGKGNYGNRPKHLAIRFAGLHDWISQRQIIIDHVSTKKQLSDILTNFCSRPIFSTLLQAI 570
R ANP VHM + K +LRYL+G P+L I Y + F L+ F D+S+G +P+ S +G ++FL GG++ + + + AQ+ AEL A+S A++ +Y+S+ + E+G+K FRSV I D+ GAL +A + +R KH+A+RF L + +I + H + L+DI T + F+T++Q I
Sbjct: 106 RACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKG-QFRLSCFTDSSFGA-NPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPKQRFATIMQLI 292
BLAST of mRNA_H-paniculata_contig50691.12346.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE) HSP 1 Score: 134 bits (337), Expect = 5.110e-33 Identity = 70/189 (37.04%), Postives = 113/189 (59.79%), Query Frame = 1
Query: 4 RFMANPLPVHMGSVKRILRYLKGAPNLKIAYSRDFNFELTGFCDASYGTGDPEKASSISGSIYFLSGGVVHFNSSFRKTTAQSITMAELVAMSTCAKQRIYLSSILGELGWKNFRSVRIFCDNKGALLLAGKGNYGNRPKHLAIRFAGLHDWISQRQIIIDHVSTKKQLSDILTNFCSRPIFSTLLQAI 570
R ANP VHM + K +LRYL+G P+L I Y + F L+ F D+S+G +P+ S +G ++FL GG++ + + + AQ+ AEL A+S A++ +Y+S+ + E+G+K FRSV I D+ GAL +A + +R KH+A+RF L + +I + H + L+DI T + F+T++Q I
Sbjct: 543 RACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKG-KFRLSCFTDSSFGA-NPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPKQRFATIMQLI 729
BLAST of mRNA_H-paniculata_contig50691.12346.1 vs. uniprot
Match: A0A6H5K4S9_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4S9_9PHAE) HSP 1 Score: 133 bits (334), Expect = 1.490e-32 Identity = 70/189 (37.04%), Postives = 112/189 (59.26%), Query Frame = 1
Query: 4 RFMANPLPVHMGSVKRILRYLKGAPNLKIAYSRDFNFELTGFCDASYGTGDPEKASSISGSIYFLSGGVVHFNSSFRKTTAQSITMAELVAMSTCAKQRIYLSSILGELGWKNFRSVRIFCDNKGALLLAGKGNYGNRPKHLAIRFAGLHDWISQRQIIIDHVSTKKQLSDILTNFCSRPIFSTLLQAI 570
R ANP VHM + K +LRYL+G P+L I Y + F L+ F D+S+G +P+ S +G ++FL GG++ + + + AQ+ AEL A+S A++ +Y+S+ + E+G+K FRSV I D+ GAL +A + +R KH+A+RF L + +I + H + L+DI T + F+T +Q I
Sbjct: 702 RACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKG-QFRLSCFTDSSFGA-NPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPKQRFATTMQLI 888
BLAST of mRNA_H-paniculata_contig50691.12346.1 vs. uniprot
Match: A0A6H5KY35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY35_9PHAE) HSP 1 Score: 122 bits (307), Expect = 4.120e-29 Identity = 67/189 (35.45%), Postives = 110/189 (58.20%), Query Frame = 1
Query: 4 RFMANPLPVHMGSVKRILRYLKGAPNLKIAYSRDFNFELTGFCDASYGTGDPEKASSISGSIYFLSGGVVHFNSSFRKTTAQSITMAELVAMSTCAKQRIYLSSILGELGWKNFRSVRIFCDNKGALLLAGKGNYGNRPKHLAIRFAGLHDWISQRQIIIDHVSTKKQLSDILTNFCSRPIFSTLLQAI 570
R ANP VHM + K +LRYL+G P L I Y + F L+ F ++S+G +P+ S +G ++FL GG++ + + + AQ+ AEL A+ A++ +Y+S+ + E+G+K FRSV I D+ GAL +A + +R KH+A+RF + +I + H + L+DI T + F+T++Q I
Sbjct: 403 RACANPAQVHMAAAKHLLRYLRGTPGLPIVYKKG-QFRLSCFTESSFGA-NPDNGRSTTGYMFFLGGGLISYGAKAQTLAAQNTVEAELQALGFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFPRELTKGHRITL-HQPSATMLADIATKHRPKQRFTTIMQLI 588
BLAST of mRNA_H-paniculata_contig50691.12346.1 vs. uniprot
Match: A0A6H5JN55_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN55_9PHAE) HSP 1 Score: 122 bits (307), Expect = 6.080e-29 Identity = 65/174 (37.36%), Postives = 105/174 (60.34%), Query Frame = 1
Query: 4 RFMANPLPVHMGSVKRILRYLKGAPNLKIAYSRDFNFELTGFCDASYGTGDPEKASSISGSIYFLSGGVVHFNSSFRKTTAQSITMAELVAMSTCAKQRIYLSSILGELGWKNFRSVRIFCDNKGALLLAGKGNYGNRPKHLAIRFAGLHDWISQRQIIIDHVSTKKQLSDILT 525
R ANP VHM + K +LRYL+G P+L I Y + F L+ F D+S+G +P+ S +G ++ L GG++ + + + AQ+ AEL A+S A++ +Y+S+ + E+G+K FRSV I D+ GAL +A + +R KH+A+RF L + + +I + H + L+DI T
Sbjct: 620 RACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKG-QFRLSCFTDSSFGA-NPDNRRSPTGYLFSLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLGELTKRHRITLHHQPSATMLADIAT 791
BLAST of mRNA_H-paniculata_contig50691.12346.1 vs. uniprot
Match: A0A6H5K4K1_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4K1_9PHAE) HSP 1 Score: 112 bits (280), Expect = 7.030e-28 Identity = 61/179 (34.08%), Postives = 103/179 (57.54%), Query Frame = 1
Query: 34 MGSVKRILRYLKGAPNLKIAYSRDFNFELTGFCDASYGTGDPEKASSISGSIYFLSGGVVHFNSSFRKTTAQSITMAELVAMSTCAKQRIYLSSILGELGWKNFRSVRIFCDNKGALLLAGKGNYGNRPKHLAIRFAGLHDWISQRQIIIDHVSTKKQLSDILTNFCSRPIFSTLLQAI 570
M + K +LRYL+G P+L I Y + F L+ F D+S+G +P+ S +G ++FL GG++ + + + AQ+ AEL A+S A++ +Y+S+ + E+G+K FRSV I D+ GA + +R KH+A++F L + +I + H L+DI T + F+T++Q I
Sbjct: 1 MAAAKHLLRYLRGTPDLPIVYKKG-QFRLSCFTDSSFGA-NPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGACDCGQHAMFSSRTKHIALQFFFLRELTKGHRITLHHQPGATILADIATKHLPKQRFATIMQLI 177
BLAST of mRNA_H-paniculata_contig50691.12346.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE) HSP 1 Score: 117 bits (293), Expect = 5.040e-27 Identity = 59/146 (40.41%), Postives = 93/146 (63.70%), Query Frame = 1
Query: 4 RFMANPLPVHMGSVKRILRYLKGAPNLKIAYSRDFNFELTGFCDASYGTGDPEKASSISGSIYFLSGGVVHFNSSFRKTTAQSITMAELVAMSTCAKQRIYLSSILGELGWKNFRSVRIFCDNKGALLLAGKGNYGNRPKHLAIRF 441
R ANP VHM + K +LRYL+G P+L I Y + F L+ F D+S+G +P+ S +G ++FL GG++ + + + AQ+ AEL A+S A++ +Y+S+ + E+G+K FRSV I D+ GAL +A + +R KH+A+RF
Sbjct: 1322 RACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKG-QFRLSCFTDSSFGA-NPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRF 1465
BLAST of mRNA_H-paniculata_contig50691.12346.1 vs. uniprot
Match: A0A5D3DVM8_CUCME (Putative mitochondrial protein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3DVM8_CUCME) HSP 1 Score: 112 bits (279), Expect = 3.190e-26 Identity = 65/175 (37.14%), Postives = 98/175 (56.00%), Query Frame = 1
Query: 1 ARFMANPLPVHMGSVKRILRYLKGAPNLKIAYSRDFNFELTGFCDASYGTGDPEKASSISGSIYFLSGGVVHFNSSFRKTTAQSITMAELVAMSTCAKQRIYLSSILGELGWKNFRSVRIFCDNKGALLLAGKGNYGNRPKHLAIRFAGLHDWISQRQIIIDHVSTKKQLSDILT 525
+RFM +P+ H+ + KRILRY+KG P+L + Y R L GF D+ Y GD SISG ++ L GV+ ++S + S T AELV ++CA Q I+L +IL L +K + I DN + L+ R KH+ IR+ L D+I+ I + + ++ Q++DILT
Sbjct: 146 SRFMNSPIKFHLLAAKRILRYIKGTPDLGMLYQRRRKLNLVGFSDSDY-AGDLNDRKSISGYVFMLGSGVISWSSKKQPIVTLSTTEAELVVATSCACQAIWLRNILENLNYKQEEASIIHYDNTSTIKLSRNRVLHERSKHIDIRYHYLRDFINDGIINLSYCKSEDQVTDILT 319
BLAST of mRNA_H-paniculata_contig50691.12346.1 vs. uniprot
Match: UPI0018F811EF (secreted RxLR effector protein 161-like n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=UPI0018F811EF) HSP 1 Score: 108 bits (270), Expect = 3.320e-26 Identity = 60/173 (34.68%), Postives = 95/173 (54.91%), Query Frame = 1
Query: 4 RFMANPLPVHMGSVKRILRYLKGAPNLKIAYSRDFNFELTGFCDASYGTGDPEKASSISGSIYFLSGGVVHFNSSFRKTTAQSITMAELVAMSTCAKQRIYLSSILGELGWKNFRSVRIFCDNKGALLLAGKGNYGNRPKHLAIRFAGLHDWISQRQIIIDHVSTKKQLSDIL 522
R+M P +H+ SVKRILRYLKG L I YS + EL G+ D+ Y GD E S G ++ LS GV+ + S + S T E +A ++C+ Q ++L +L ELG+ ++ I+CD+ A+ L+ KH+ +RF L D + + H +++Q++DI+
Sbjct: 9 RYMERPTELHLQSVKRILRYLKGTTELGIFYSNGGDEELVGYTDSDY-AGDVEDRKSTMGYMFMLSSGVICWASKKQPVVTLSTTEVEFLATASCSCQAVWLRRLLEELGYVQHEAIVIYCDSSSAIKLSRNSIMHGHSKHIDVRFYFLRDLSKDGMVKMVHCRSQEQVADIM 180
BLAST of mRNA_H-paniculata_contig50691.12346.1 vs. uniprot
Match: A0A6H5J897_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J897_9PHAE) HSP 1 Score: 114 bits (284), Expect = 7.100e-26 Identity = 68/186 (36.56%), Postives = 110/186 (59.14%), Query Frame = 1
Query: 4 RFMANPLPVHMGSVKRILRYLKGAPNLKIAYSRDFNFELTGFCDASY-GTGDPEKASSISGSIYFLSGGVVHFNSSFRKTTAQSITMAELVAMSTCAKQRIYLSSILGELGWKNFRSVRIFCDNKGALLLAGKGNYGNRPKHLAIRFAGLHDWISQRQIIIDHVSTKKQLSDILTNFCSRPIFSTL 558
R M P HM KR+LRYL+G P++ + + R ++L +CDAS+ G+ + + S +G I+ L+GGVV S+ +K TAQS AE++AM+T A++ IYL +L ELG+ ++ I D+ GA+ AG + R K ++ R+ L +++ I++ V +++QL+DILT R F L
Sbjct: 512 RGMNKPTNQHMVGAKRVLRYLRGCPDMPLKFRRG-QWDLKCYCDASFAGSSERLQKRSSTGYIFILAGGVVSAASTLQKLTAQSSVHAEIIAMATAAREAIYLQGVLSELGFP-CGNIPIHSDSTGAMSTAGNSMFRGRSKFISTRYWLLRQNVNKGNIVLKFVRSEEQLADILTKHLERVQFVKL 695 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig50691.12346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig50691.12346.1 >prot_H-paniculata_contig50691.12346.1 ID=prot_H-paniculata_contig50691.12346.1|Name=mRNA_H-paniculata_contig50691.12346.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=189bp MANPLPVHMGSVKRILRYLKGAPNLKIAYSRDFNFELTGFCDASYGTGDPback to top mRNA from alignment at H-paniculata_contig50691:8..583+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig50691.12346.1 ID=mRNA_H-paniculata_contig50691.12346.1|Name=mRNA_H-paniculata_contig50691.12346.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=576bp|location=Sequence derived from alignment at H-paniculata_contig50691:8..583+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig50691:8..583+ >mRNA_H-paniculata_contig50691.12346.1 ID=mRNA_H-paniculata_contig50691.12346.1|Name=mRNA_H-paniculata_contig50691.12346.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1134bp|location=Sequence derived from alignment at H-paniculata_contig50691:8..583+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |