mRNA_H-paniculata_contig5068.12342.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5068.12342.1
Unique NamemRNA_H-paniculata_contig5068.12342.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig5068.12342.1 vs. uniprot
Match: D7FVF4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVF4_ECTSI)

HSP 1 Score: 184 bits (468), Expect = 3.890e-57
Identity = 90/118 (76.27%), Postives = 97/118 (82.20%), Query Frame = 1
Query:    1 MATTRIPSSFTLPIGFAVLGLAFTGLGGINVGFPTTLVGLLLAFQATRVVFEFDDEAMEVKIGEDINAELESSGENVFVGGESRWKYDTWTNWEVYPSEAFPVLMYFKETQTKPEGQI 354
            M+T  +PS F LPIG A  GLA TGLG +  GFP ++VGLLLAFQATRV FEFDD AMEVKIGE  + ELESSGEN FVGGESRW YDTWTNWEVYPSE  P+LMYFKETQTKPEGQI
Sbjct:   67 MSTVVVPSDFKLPIGIAAFGLAITGLGNVGAGFPVSVVGLLLAFQATRVKFEFDDVAMEVKIGETPD-ELESSGENAFVGGESRWNYDTWTNWEVYPSEKLPILMYFKETQTKPEGQI 183          
BLAST of mRNA_H-paniculata_contig5068.12342.1 vs. uniprot
Match: A0A836CR12_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CR12_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.650e-36
Identity = 68/116 (58.62%), Postives = 76/116 (65.52%), Query Frame = 1
Query:    7 TTRIPSSFTLPIGFAVLGLAFTGLGGINVGFPTTLVGLLLAFQATRVVFEFDDEAMEVKIGEDINAELESSGENVFVGGESRWKYDTWTNWEVYPSEAFPVLMYFKETQTKPEGQI 354
            T  IP  F LP     +G A   + G   G P   +G LL  QATRV FEFD E+MEVKI      +L  SGEN  VGG++RW YDTWTNWEVYPSEA PVLMYFKETQT P+GQI
Sbjct:   60 TVAIPPDFRLPAALVAIGGALA-VSGNRAGLPVLGIGALLGLQATRVRFEFDAESMEVKIDAG-KGDLADSGENFAVGGQNRWAYDTWTNWEVYPSEALPVLMYFKETQTSPDGQI 173          
BLAST of mRNA_H-paniculata_contig5068.12342.1 vs. uniprot
Match: A0A804P2C3_MAIZE (Uncharacterized protein n=4 Tax=Zea mays TaxID=4577 RepID=A0A804P2C3_MAIZE)

HSP 1 Score: 119 bits (297), Expect = 1.810e-31
Identity = 63/117 (53.85%), Postives = 79/117 (67.52%), Query Frame = 1
Query:    4 ATTRIPSSFTLPIGFAVLGLAFTGLGGINVGFPTTLVGLLLAFQATRVVFEFDDEAMEVKIGEDINAELESSGENVFVGGESRWKYDTWTNWEVYPSEAFPVLMYFKETQTKPEGQI 354
            AT      + LPI    +  AF     +    P  L+GLLL FQ TRV F FD+EA+EVK+GE    +L+ SGENVFVGG++RWKY T+ NWE++  + FPVL+YFKETQTKPEGQI
Sbjct:   49 ATVVPDPDYRLPIAILGIASAFAYADNLLAAAPVGLLGLLLLFQTTRVRFVFDNEALEVKVGE----QLQESGENVFVGGKNRWKYSTFVNWELWWPQ-FPVLVYFKETQTKPEGQI 160          
BLAST of mRNA_H-paniculata_contig5068.12342.1 vs. uniprot
Match: A0A151SLH3_CAJCA (Uncharacterized protein n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SLH3_CAJCA)

HSP 1 Score: 117 bits (293), Expect = 1.950e-31
Identity = 63/118 (53.39%), Postives = 81/118 (68.64%), Query Frame = 1
Query:    1 MATTRIPSSFTLPIGFAVLGLAFTGLGGINVGFPTTLVGLLLAFQATRVVFEFDDEAMEVKIGEDINAELESSGENVFVGGESRWKYDTWTNWEVYPSEAFPVLMYFKETQTKPEGQI 354
            MA+T + +   LP      GL +T    +    P  L+GLLL FQ TRV F FDDEA+EVK+G+    +L+ SGENVFVGG++RWKY T+ NWE++    FP+L+YFKETQTKPEGQI
Sbjct:    1 MASTLLSAHHFLPSHSVAGGLVYTD--NLVPAVPAGLLGLLLLFQTTRVRFVFDDEALEVKVGD----QLQESGENVFVGGKNRWKYSTFVNWELWWPN-FPILVYFKETQTKPEGQI 111          
BLAST of mRNA_H-paniculata_contig5068.12342.1 vs. uniprot
Match: B6T536_MAIZE (Uncharacterized protein n=1 Tax=Zea mays TaxID=4577 RepID=B6T536_MAIZE)

HSP 1 Score: 119 bits (297), Expect = 2.360e-31
Identity = 63/117 (53.85%), Postives = 79/117 (67.52%), Query Frame = 1
Query:    4 ATTRIPSSFTLPIGFAVLGLAFTGLGGINVGFPTTLVGLLLAFQATRVVFEFDDEAMEVKIGEDINAELESSGENVFVGGESRWKYDTWTNWEVYPSEAFPVLMYFKETQTKPEGQI 354
            AT      + LPI    +  AF     +    P  L+GLLL FQ TRV F FD+EA+EVK+GE    +L+ SGENVFVGG++RWKY T+ NWE++  + FPVL+YFKETQTKPEGQI
Sbjct:   71 ATVVPDPDYRLPIAILGIASAFAYADNLLAAAPVGLLGLLLLFQTTRVRFVFDNEALEVKVGE----QLQESGENVFVGGKNRWKYSTFVNWELWWPQ-FPVLVYFKETQTKPEGQI 182          
BLAST of mRNA_H-paniculata_contig5068.12342.1 vs. uniprot
Match: A0A1D6QNZ7_MAIZE (DUF3119 family protein n=3 Tax=Zea mays TaxID=4577 RepID=A0A1D6QNZ7_MAIZE)

HSP 1 Score: 119 bits (297), Expect = 3.230e-31
Identity = 63/117 (53.85%), Postives = 79/117 (67.52%), Query Frame = 1
Query:    4 ATTRIPSSFTLPIGFAVLGLAFTGLGGINVGFPTTLVGLLLAFQATRVVFEFDDEAMEVKIGEDINAELESSGENVFVGGESRWKYDTWTNWEVYPSEAFPVLMYFKETQTKPEGQI 354
            AT      + LPI    +  AF     +    P  L+GLLL FQ TRV F FD+EA+EVK+GE    +L+ SGENVFVGG++RWKY T+ NWE++  + FPVL+YFKETQTKPEGQI
Sbjct:   71 ATVVPDPDYRLPIAILGIASAFAYADNLLAAAPVGLLGLLLLFQTTRVRFVFDNEALEVKVGE----QLQESGENVFVGGKNRWKYSTFVNWELWWPQ-FPVLVYFKETQTKPEGQI 182          
BLAST of mRNA_H-paniculata_contig5068.12342.1 vs. uniprot
Match: UPI000D1C73A7 (uncharacterized protein LOC112351026 n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C73A7)

HSP 1 Score: 117 bits (293), Expect = 9.220e-31
Identity = 60/86 (69.77%), Postives = 71/86 (82.56%), Query Frame = 1
Query:  100 PTTLVGLLLAFQATRVVFEFDDEAMEVKIGEDINAELESSGENVFVGGESRWKYDTWTNWEVY-PSEAFPVLMYFKETQTKPEGQI 354
            P  L+GLLL FQ TRV F FDDEA+EVKIG    +EL+ SGENVFVGG++RWKY T+TNWE++ PS  FPVL+YFKETQTKPEGQ+
Sbjct:   90 PIGLLGLLLLFQTTRVKFVFDDEALEVKIG----SELQESGENVFVGGKNRWKYSTFTNWELWWPS--FPVLVYFKETQTKPEGQV 169          
BLAST of mRNA_H-paniculata_contig5068.12342.1 vs. uniprot
Match: UPI001F5DBB40 (uncharacterized protein LOC124692150 isoform X1 n=5 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5DBB40)

HSP 1 Score: 117 bits (293), Expect = 1.400e-30
Identity = 62/116 (53.45%), Postives = 79/116 (68.10%), Query Frame = 1
Query:   10 TRIPS-SFTLPIGFAVLGLAFTGLGGINVGFPTTLVGLLLAFQATRVVFEFDDEAMEVKIGEDINAELESSGENVFVGGESRWKYDTWTNWEVYPSEAFPVLMYFKETQTKPEGQI 354
            T +P   + LPI    +  AF     +    P  L+GLLL FQ TRV F FDDEA+EVK+G     +L+ SGENVFVGG++RWKY T+ NWE++  + FP+L+YFKETQTKPEGQI
Sbjct:   74 TVVPDPDYRLPIAILGIAGAFAYADNLLAAAPVGLLGLLLLFQTTRVRFVFDDEALEVKVGN----QLQESGENVFVGGKNRWKYSTFVNWELWWPQ-FPILVYFKETQTKPEGQI 184          
BLAST of mRNA_H-paniculata_contig5068.12342.1 vs. uniprot
Match: A0A5N6QI99_9ROSI (Uncharacterized protein n=1 Tax=Carpinus fangiana TaxID=176857 RepID=A0A5N6QI99_9ROSI)

HSP 1 Score: 117 bits (292), Expect = 1.650e-30
Identity = 68/119 (57.14%), Postives = 85/119 (71.43%), Query Frame = 1
Query:   10 TRIPS-SFTLPIGFAVL--GLAFTGLGGINVGFPTTLVGLLLAFQATRVVFEFDDEAMEVKIGEDINAELESSGENVFVGGESRWKYDTWTNWEVY-PSEAFPVLMYFKETQTKPEGQI 354
            T IP   + +P+ F  L  GLA+T    +    P  L+GLLL FQ TRV F FD+EA+EVK+GE    +L+ SGENVFVGG++RWKY T+ NWE++ PS  FPVL+YFKETQTKPEGQI
Sbjct:   68 TVIPDPDYRIPVVFLGLAGGLAYTN--NLLPAAPIGLLGLLLLFQTTRVRFVFDEEALEVKVGE----QLQDSGENVFVGGKNRWKYSTFVNWELWWPS--FPVLVYFKETQTKPEGQI 178          
BLAST of mRNA_H-paniculata_contig5068.12342.1 vs. uniprot
Match: C5Y011_SORBI (Uncharacterized protein n=2 Tax=Sorghum bicolor TaxID=4558 RepID=C5Y011_SORBI)

HSP 1 Score: 117 bits (292), Expect = 1.880e-30
Identity = 61/116 (52.59%), Postives = 80/116 (68.97%), Query Frame = 1
Query:   10 TRIPS-SFTLPIGFAVLGLAFTGLGGINVGFPTTLVGLLLAFQATRVVFEFDDEAMEVKIGEDINAELESSGENVFVGGESRWKYDTWTNWEVYPSEAFPVLMYFKETQTKPEGQI 354
            T +P   + LPI    +  AF     +    P  L+GLLL FQ TRV F FD+EA+EVK+G+    +L+ SGENVFVGG++RWKY T+ NWE++  + FP+L+YFKETQTKPEGQI
Sbjct:   73 TVVPDPDYRLPIAILGIASAFAYADNLLAAAPVGLLGLLLLFQTTRVRFVFDNEALEVKVGD----QLQESGENVFVGGKNRWKYSTFVNWELWWPQ-FPILVYFKETQTKPEGQI 183          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5068.12342.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVF4_ECTSI3.890e-5776.27Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CR12_9STRA1.650e-3658.62Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A804P2C3_MAIZE1.810e-3153.85Uncharacterized protein n=4 Tax=Zea mays TaxID=457... [more]
A0A151SLH3_CAJCA1.950e-3153.39Uncharacterized protein n=1 Tax=Cajanus cajan TaxI... [more]
B6T536_MAIZE2.360e-3153.85Uncharacterized protein n=1 Tax=Zea mays TaxID=457... [more]
A0A1D6QNZ7_MAIZE3.230e-3153.85DUF3119 family protein n=3 Tax=Zea mays TaxID=4577... [more]
UPI000D1C73A79.220e-3169.77uncharacterized protein LOC112351026 n=2 Tax=Selag... [more]
UPI001F5DBB401.400e-3053.45uncharacterized protein LOC124692150 isoform X1 n=... [more]
A0A5N6QI99_9ROSI1.650e-3057.14Uncharacterized protein n=1 Tax=Carpinus fangiana ... [more]
C5Y011_SORBI1.880e-3052.59Uncharacterized protein n=2 Tax=Sorghum bicolor Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5068contigH-paniculata_contig5068:11306..12161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score184.5
Seed ortholog evalue2.9e-44
Seed eggNOG ortholog2880.D7FVF4
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Protein of unknown function (DUF3119)
EggNOG OGs2CPJ9@1,2R1VP@2759
Ec32 ortholog descriptionProtein of unknown function DUF3119
Ec32 orthologEc-14_000910.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size354
Cds size354
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930488.429739-CDS-H-paniculata_contig5068:11305..114731622930488.429739-CDS-H-paniculata_contig5068:11305..11473Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5068 11306..11473 +
1691481314.7988923-CDS-H-paniculata_contig5068:11305..114731691481314.7988923-CDS-H-paniculata_contig5068:11305..11473Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5068 11306..11473 +
1622930488.44587-CDS-H-paniculata_contig5068:11975..121611622930488.44587-CDS-H-paniculata_contig5068:11975..12161Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5068 11976..12161 +
1691481314.8105638-CDS-H-paniculata_contig5068:11975..121611691481314.8105638-CDS-H-paniculata_contig5068:11975..12161Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5068 11976..12161 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5068.12342.1prot_H-paniculata_contig5068.12342.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5068 11306..12161 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5068.12342.1

>prot_H-paniculata_contig5068.12342.1 ID=prot_H-paniculata_contig5068.12342.1|Name=mRNA_H-paniculata_contig5068.12342.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp
MATTRIPSSFTLPIGFAVLGLAFTGLGGINVGFPTTLVGLLLAFQATRVV
FEFDDEAMEVKIGEDINAELESSGENVFVGGESRWKYDTWTNWEVYPSEA
FPVLMYFKETQTKPEGQI
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mRNA from alignment at H-paniculata_contig5068:11306..12161+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5068.12342.1 ID=mRNA_H-paniculata_contig5068.12342.1|Name=mRNA_H-paniculata_contig5068.12342.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=856bp|location=Sequence derived from alignment at H-paniculata_contig5068:11306..12161+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCACGACCAGGATTCCCTCGTCCTTCACTCTCCCCATTGGGTTCGC TGTCTTGGGTCTTGCCTTCACAGGACTTGGTGGCATCAACGTTGGGTTTC CGACCACCTTGGTAGGCTTGCTCCTGGCATTTCAGGCCACCAGGGTTGTC TTCGAGTTCGATGATGAGGTCTGTCATTTCATCAGCACGCTGCGAATCCC AAGAGCGTAGTGATATTTAGTACACAGGAAATCGGTCAGGTTGTGTTGTC CCCTCCCTCAACGCCATTTACGTCGCATTGCATTGGTTTGGAGCTGCATT GCTCTGTTGTGGAGTGTGTGTGACGGTACGAAACTTGAATGGATGGTCGA CCGAACTGTGCAGGGTGGGGGTTAGATCCTCAGAATTCGCCGCAGTGAGT TGCTGGCAGTGTAGTTTAGTGACGATAACGTCTTGGTCAGGATGCTAATA ATTTGAACAGCGCATGCTGTTGCTGCGTAACACCAGGTGGATTTATCAAC CTATCACTTGGAATATATTTGGCCTTTTTGCGCTTGGCATTTTCCTGATT TGCTCATGTATAATCCCCTGTGCCAATGAAGTCAAATCAAGTAGGTTTTT GGGAAGGATTTGAAACGAATGGAACCTCCGAACGTAGTTTAATAAGCCCC GGTATGCTTCGTTTGAACAGGCGATGGAGGTGAAAATTGGCGAAGACATA AACGCCGAATTGGAAAGCTCCGGGGAGAACGTATTTGTTGGTGGAGAGTC GAGGTGGAAGTATGATACCTGGACCAACTGGGAGGTGTACCCCAGTGAGG CGTTCCCCGTGCTCATGTACTTCAAGGAGACGCAAACCAAGCCGGAGGGA CAGATT
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Coding sequence (CDS) from alignment at H-paniculata_contig5068:11306..12161+

>mRNA_H-paniculata_contig5068.12342.1 ID=mRNA_H-paniculata_contig5068.12342.1|Name=mRNA_H-paniculata_contig5068.12342.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at H-paniculata_contig5068:11306..12161+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCACGACCAGGATTCCCTCGTCCTTCACTCTCCCCATTGGGTTCGC
TGTCTTGGGTCTTGCCTTCACAGGACTTGGTGGCATCAACGTTGGGTTTC
CGACCACCTTGGTAGGCTTGCTCCTGGCATTTCAGGCCACCAGGGTTGTC
TTCGAGTTCGATGATGAGATGGCCACGACCAGGATTCCCTCGTCCTTCAC
TCTCCCCATTGGGTTCGCTGTCTTGGGTCTTGCCTTCACAGGACTTGGTG
GCATCAACGTTGGGTTTCCGACCACCTTGGTAGGCTTGCTCCTGGCATTT
CAGGCCACCAGGGTTGTCTTCGAGTTCGATGATGAGGCGATGGAGGTGAA
AATTGGCGAAGACATAAACGCCGAATTGGAAAGCTCCGGGGAGAACGTAT
TTGTTGGTGGAGAGTCGAGGTGGAAGTATGATACCTGGACCAACTGGGAG
GTGTACCCCAGTGAGGCGTTCCCCGTGCTCATGTACTTCAAGGAGACGCA
AACCAAGCCGGAGGGACAGATTGCGATGGAGGTGAAAATTGGCGAAGACA
TAAACGCCGAATTGGAAAGCTCCGGGGAGAACGTATTTGTTGGTGGAGAG
TCGAGGTGGAAGTATGATACCTGGACCAACTGGGAGGTGTACCCCAGTGA
GGCGTTCCCCGTGCTCATGTACTTCAAGGAGACGCAAACCAAGCCGGAGG
GACAGATT
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