mRNA_H-paniculata_contig5048.12310.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5048.12310.1
Unique NamemRNA_H-paniculata_contig5048.12310.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig5048.12310.1 vs. uniprot
Match: D8LBG3_ECTSI (2-keto-3-deoxy-6-phosphogluconate aldolase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBG3_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 3.870e-52
Identity = 107/239 (44.77%), Postives = 151/239 (63.18%), Query Frame = 2 
Query:   92 HVVRCFVARVKQPCRPSGKHDLWTRILETSWPL----AVLRDLDVERGEEIASTLYAADFRMVSVTVDTKGFEKIVRECCDLQLPGMVIGVSSVTSAEQVDTAFECGAEFISSTCLDLAVVRRTKELGMLSIPGVSTESQATEAVAAGGDILKVFPANKISPATTQRIVNV--SYDTPVIVAGGVEVVDLKSFSSAGVAGFAVGRTLFTPDMTSSGLKVKAERFMRAARTLSWAQLNRQ 790
            HV RC  AR+   CR +   +L ++  E +  L    AVLRD+ +ER  E+   LY   F M+SVT DTK F KI+R       P +++G SSVT+ ++VD AF C   F+SST  D A+V+RT++LGM+SIPGVST +QA  AV AGG ILKV+PA  +SP   + IVN   + + PV+++GGVE   L+++  +G +GFAVGRTLF P+ +S+ +  +A  F+     LSW Q  R+
Sbjct:   32 HVSRCQAARLS--CRET---ELRSKPREDALSLPISIAVLRDVQLERAVEVVRALYEEGFNMISVTADTKNFSKILRSIPRSFFPDLLLGASSVTTLDEVDVAFACAVNFVSSTSCDPAIVKRTRDLGMVSIPGVSTPAQAASAVQAGGGILKVYPATNVSPNQCRDIVNAIKTSNIPVVISGGVEPDQLQAYVKSGASGFAVGRTLFEPEKSSAEIADRARCFL-----LSWPQKRRR 260
[Close]
BLAST of mRNA_H-paniculata_contig5048.12310.1 vs. uniprot
Match: UPI001C669F04 (2-dehydro-3-deoxy-6-phosphogalactonate aldolase n=1 Tax=Sneathiella aquimaris TaxID=2599305 RepID=UPI001C669F04)

HSP 1 Score: 106 bits (264), Expect = 2.330e-23
Identity = 65/194 (33.51%), Postives = 101/194 (52.06%), Query Frame = 2 
Query:  188 LAVLRDLDVERGEEIASTLYAADFRMVSVTVDTKGFEKIVRECCDLQLPGMVIGVSSVTSAEQVDTAFECGAEFISSTCLDLAVVRRTKELGMLSIPGVSTESQATEAVAAGGDILKVFPANKISPATTQRIVNV-SYDTPVIVAGGVEVVDLKSFSSAGVAGFAVGRTLFTPDMTSSGLKVKAERFMRAARTL 766
            +A+LR +       ++  L  +  R++ VT+++  + K +          +++G  +V S + VD     G + I S  +++ V++RTKELGMLS PG  T S+   A+ AG DILK+FPA+ + PA  + I  V    TP+   GGV V  ++SF  AGV    VG  L+ P  T + +   A  F    RTL
Sbjct:   15 IAILRGITPTEAGPVSDELVQSGIRLIEVTLNSPDWSKSLEIINSRHGDDIILGAGTVLSPDDVDRVQALGGQIIISPNMNVEVIKRTKELGMLSAPGCYTPSECFTALEAGADILKIFPADTLGPAFIKAIAAVLPKGTPICPTGGVSVDTMQSFLDAGVYAMGVGSALYKPGKTVAEIAASAAVFCDKYRTL 208
[Close]
BLAST of mRNA_H-paniculata_contig5048.12310.1 vs. uniprot
Match: UPI001B151FE4 (2-dehydro-3-deoxy-6-phosphogalactonate aldolase n=1 Tax=Sphingobium sp. TaxID=1912891 RepID=UPI001B151FE4)

HSP 1 Score: 104 bits (260), Expect = 7.140e-23
Identity = 66/196 (33.67%), Postives = 103/196 (52.55%), Query Frame = 2 
Query:  188 LAVLRDLDVERGEEIASTLYAADFRMVSVTVDTKGFEKIVRECCDLQLPGMVIGVSSVTSAEQVDTAFECGAEFISSTCLDLAVVRRTKELGMLSIPGVSTESQATEAVAAGGDILKVFPANKISPATTQRIVNV-SYDTPVIVAGGVEVVDLKSFSSAGVAGFAVGRTLFTPDMTSSGLKVKAERFMRAARTLSW 772
            +A+LR L  E    +  TL  A  R + V +++    + +    D     ++IG  +V S   VD+  + G   I S  ++  V+RRTKELG+LS+PG++T S+A  A+ AG D LK+FPA   +PA  + +  V   D PV   GG+   +L ++  AG  GF +G  LF P +  + L  +A+     A T +W
Sbjct:   14 VAILRGLAPEDAPSVGETLVGAGLRCIEVPLNSPRPLESIAALADAAHESVLIGAGTVLSPADVDSVAQAGGRIIVSPNMNPRVIRRTKELGLLSLPGIATPSEAFAAIEAGADGLKLFPAEMHNPAVLKAMKAVLPSDIPVFAVGGIGPDNLTAWRRAGADGFGIGSALFRPGIALAELDERAK-----ALTAAW 204
[Close]
BLAST of mRNA_H-paniculata_contig5048.12310.1 vs. uniprot
Match: A0A512DJU2_9PROT (2-dehydro-3-deoxy-6-phosphogalactonate aldolase n=1 Tax=Skermanella aerolata TaxID=393310 RepID=A0A512DJU2_9PROT)

HSP 1 Score: 103 bits (258), Expect = 1.670e-22
Identity = 63/199 (31.66%), Postives = 103/199 (51.76%), Query Frame = 2 
Query:  188 LAVLRDLDVERGEEIASTLYAADFRMVSVTVDTKGFEKIVRECCDLQLPGMVIGVSSVTSAEQVDTAFECGAEFISSTCLDLAVVRRTKELGMLSIPGVSTESQATEAVAAGGDILKVFPANKISPATTQRIVNV-SYDTPVIVAGGVEVVDLKSFSSAGVAGFAVGRTLFTPDMTSSGLKVKAERFMRAARTLSWAQL 781
            +A+LR L     E+ A  LY   FR++ V +++      +     L     ++G  +V + EQV    + GAE +     D  ++R  K  GM+S+PG++T ++A  A+ AG D LK+FPA  I P   + +  V   D  ++  GG+    +  +  AGVAGF +G  L+TP MT + +  +A RF+ A     W++L
Sbjct:   20 VAILRGLTPTEAEDTAQALYERGFRLIEVPLNSPQPFDSIASIRKLLPADALVGAGTVMTVEQVSRLSDLGAELVVMPHADAEIIRAAKARGMVSLPGITTPTEAFSALKAGADALKLFPAELIGPKIVKAMRAVLPPDVRLLPVGGISPDTMTDYHDAGVAGFGLGSALYTPGMTVAEVAERANRFVTA-----WSRL 213
[Close]
BLAST of mRNA_H-paniculata_contig5048.12310.1 vs. uniprot
Match: UPI001A939860 (2-dehydro-3-deoxy-6-phosphogalactonate aldolase n=1 Tax=unclassified Jiella TaxID=2643868 RepID=UPI001A939860)

HSP 1 Score: 102 bits (254), Expect = 5.620e-22
Identity = 63/200 (31.50%), Postives = 104/200 (52.00%), Query Frame = 2 
Query:  176 TSWP------LAVLRDLDVERGEEIASTLYAADFRMVSVTVDTKGFEKIVRECCDLQLPGMVIGVSSVTSAEQVDTAFECGAEFISSTCLDLAVVRRTKELGMLSIPGVSTESQATEAVAAGGDILKVFPANKISPATTQRIVNV-SYDTPVIVAGGVEVVDLKSFSSAGVAGFAVGRTLFTPDMTSSGLKVKAERFMRA 754
            T WP      +A+LR L  +  E I + L  A F  + + +++      +     L   G++IG  +V  A  VD   +CG E + S  +D AV+RR +E G++++PGV T ++A  A + G   LK FPA+ + P+    I  V     P+   GGV   D  ++ +AG+  F +G +L+ P   ++ +K +AER +RA
Sbjct:    5 TPWPKLKRDLVAILRGLRPQTCEAIVAVLIEAGFEAIEIPLNSPEPFLSIERASMLAPDGVLIGAGTVLDAASVDRLADCGGELLVSPNVDAAVLRRAREQGLVTMPGVFTATEALAAASLGASALKFFPASVLGPSGITAIRAVLPAGLPIGAVGGVSEADFAAYGAAGIRHFGLGSSLYKPGDDAATVKARAERTIRA 204
[Close]
BLAST of mRNA_H-paniculata_contig5048.12310.1 vs. uniprot
Match: A0A520H4I0_9BURK (2-dehydro-3-deoxy-6-phosphogalactonate aldolase n=1 Tax=Variovorax sp. TaxID=1871043 RepID=A0A520H4I0_9BURK)

HSP 1 Score: 102 bits (254), Expect = 5.890e-22
Identity = 69/209 (33.01%), Postives = 107/209 (51.20%), Query Frame = 2 
Query:  140 SGKHDLWTRILETSWPLAVLRDLDVERGEEIASTLYAADFRMVSVTV---DTKGFEKIVRECCDLQLPGMVIGVSSVTSAEQVDTAFECGAEFISSTCLDLAVVRRTKELGMLSIPGVSTESQATEAVAAGGDILKVFPANKISPATTQRIVNV-SYDTPVIVAGGVEVVDLKSFSSAGVAGFAVGRTLFTPDMTSSGLKVKAERFMRA 754
            S  HD +   L     +A+LR L       I   L  A FR++ V +   D      ++R  C     G ++G  +V +A QV    + G E I S   D AVV  TK LG++S+PGV+T S+A  A+AAG + LK+FPA   SPA  +  + V    TP++  GG+   ++ ++ +AG  GF +G  L+ P  +++ +   A  F+ A
Sbjct:    3 STPHDTFEAALRQIPLVAILRGLTPAEAPAIGDALVEAGFRLLEVPLNSPDPLASIALLRARC----AGALVGAGTVLTARQVGEVRDAGGELIVSPNFDAAVVAETKRLGLVSLPGVATPSEAFGALAAGANGLKLFPAEAASPAVVKAWLAVLPRGTPLMPVGGIAPRNMDAWRAAGATGFGIGSALYKPGKSAAAVAEDARAFVAA 207
[Close]
BLAST of mRNA_H-paniculata_contig5048.12310.1 vs. uniprot
Match: A0A089YMG6_9PSED (2-dehydro-3-deoxy-6-phosphogalactonate aldolase n=14 Tax=Pseudomonadaceae TaxID=135621 RepID=A0A089YMG6_9PSED)

HSP 1 Score: 101 bits (251), Expect = 1.330e-21
Identity = 64/194 (32.99%), Postives = 103/194 (53.09%), Query Frame = 2 
Query:  188 LAVLRDLDVERGEEIASTLYAADFRMVSVTVDTKGFEKIVRECCDLQLPGMVIGVSSVTSAEQVDTAFECGAEFISSTCLDLAVVRRTKELGMLSIPGVSTESQATEAVAAGGDILKVFPANKISPATTQRIVNV-SYDTPVIVAGGVEVVDLKSFSSAGVAGFAVGRTLFTPDMTSSGLKVKAERFMRAARTL 766
            +A+LR L  E    I   LY A FR++ V +++      +R   +      +IG  +V SAE V      G + I     D AV++  KE G+   PGV T ++A  A+ AG D+LK+FPA  ++PA  + ++ V    T ++  GG+   ++ +F  AGVAGF +G  LF P MT   +   A+ +++A ++L
Sbjct:   12 IAILRGLRPEESVAIGEVLYDAGFRIIEVPLNSPQPYDSIRLLRNTLPADCLIGAGTVLSAEHVQQVKAAGGQLIVMPHSDPAVLKAAKEAGLYLAPGVVTPTEAFAALVAGADVLKLFPAESLTPAVVKALLAVLPKGTALVPVGGISPDNMHAFLDAGVAGFGLGSGLFKPGMTVQQVADNAKAYVQAWQSL 205
[Close]
BLAST of mRNA_H-paniculata_contig5048.12310.1 vs. uniprot
Match: UPI001663D713 (bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase n=1 Tax=Parapedobacter pyrenivorans TaxID=1305674 RepID=UPI001663D713)

HSP 1 Score: 101 bits (251), Expect = 1.330e-21
Identity = 56/169 (33.14%), Postives = 92/169 (54.44%), Query Frame = 2 
Query:  188 LAVLRDLDVERGEEIASTLYAADFRMVSVTVDTKGFEKIVRECCDLQLPGMVIGVSSVTSAEQVDTAFECGAEFISSTCLDLAVVRRTKELGMLSIPGVSTESQATEAVAAGGDILKVFPANKISPATTQRIVNVSYDTPVIVAGGVEVVDLKSFSSAGVAGFAVGRTL 694
            +A++R L+   G  +A  LYA   R++ +T+++     ++R+  D     MV+G  +V  A+  + A   GA F+ S  + + V+R+ K+LG++SIPG  T ++   A   G DI+KVFPA   SPA  + I       P++  GG+   ++K F  AG  GF +G  L
Sbjct:   13 VAIIRGLNPSYGVAVAEALYAGGIRILEITMNSDEPLSVIRQITDRFGDRMVVGAGTVLDADMAEVAVAAGARFVLSPIVAVEVIRKAKDLGVVSIPGAYTATEIYTAYKNGADIVKVFPAT--SPAYIRDIAGPLPQIPLLPTGGITPQNIKDFKHAGAVGFGIGSAL 179
[Close]
BLAST of mRNA_H-paniculata_contig5048.12310.1 vs. uniprot
Match: UPI001E4097A3 (2-dehydro-3-deoxy-6-phosphogalactonate aldolase n=3 Tax=Shewanella TaxID=22 RepID=UPI001E4097A3)

HSP 1 Score: 100 bits (250), Expect = 1.800e-21
Identity = 57/194 (29.38%), Postives = 101/194 (52.06%), Query Frame = 2 
Query:  188 LAVLRDLDVERGEEIASTLYAADFRMVSVTVDTKGFEKIVRECCDLQLPGMVIGVSSVTSAEQVDTAFECGAEFISSTCLDLAVVRRTKELGMLSIPGVSTESQATEAVAAGGDILKVFPANKISPATTQRIVNVS-YDTPVIVAGGVEVVDLKSFSSAGVAGFAVGRTLFTPDMTSSGLKVKAERFMRAARTL 766
            +A+LR +  E   E+   L    F M+ V +++    + +R   +      +IG  +V + EQ +     G + I S  ++ AV++RTKEL M+S PGV+T ++   A+ AG D  K FPA+ I P+T +   +V+    P++  GG+   ++  + SAG  GF +G  L+ P  T + ++  A+  ++    L
Sbjct:   13 IAILRGVTNEEVVEVTGALIEEGFTMIEVPLNSPNAVESIRRIVEAYGDKALIGAGTVLTVEQAEAVAAVGGKLIVSPNMNPAVIKRTKELDMISAPGVATPTELFAAIEAGADAAKAFPADAIPPSTIKAWTSVAPKGYPILAVGGIHAGNMADYLSAGAVGFGIGSNLYKPGKTVAEVRAVAKEMIQTISAL 206
[Close]
BLAST of mRNA_H-paniculata_contig5048.12310.1 vs. uniprot
Match: UPI0009907518 (2-dehydro-3-deoxy-6-phosphogalactonate aldolase n=2 Tax=Microbulbifer TaxID=48073 RepID=UPI0009907518)

HSP 1 Score: 100 bits (250), Expect = 1.980e-21
Identity = 60/196 (30.61%), Postives = 103/196 (52.55%), Query Frame = 2 
Query:  161 TRILETSWPLAVLRDLDVERGEEIASTLYAADFRMVSVTVDTKGFEKIVRECCDLQLPGMVIGVSSVTSAEQVDTAFECGAEFISSTCLDLAVVRRTKELGMLSIPGVSTESQATEAVAAGGDILKVFPANKISPATTQRIVNVSYDTPVIVAGGVEVVDLKSFSSAGVAGFAVGRTLFTPDMTSSGLKVKAERFM 748
            TR LE    +A+LR +       IA T+  + FR++ V +++      ++   ++    +++G  +V + EQV    + G + I S   +  V+R TK LG++S+PG  T ++A  A AAG D LK+FPA  + P   +    V  D PV+  GGV   D+  + +AG +GF +G  L+   MT   ++  A+ ++
Sbjct:    7 TRYLEALPLVAILRGVQPTEVVAIADTIRESGFRIIEVPLNSPEPYASIQALAEVMGDEVLVGAGTVLTVEQVRAVADAGGKVIISPNTNEDVIRETKRLGLISMPGFCTPTEALAAAAAGADALKLFPATALGPEGFKVASAVFPDLPVLAVGGVSPQDMPEYLAAGFSGFGLGSGLYRAGMTVEQVRENADAYV 202
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5048.12310.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBG3_ECTSI3.870e-5244.772-keto-3-deoxy-6-phosphogluconate aldolase n=2 Tax... [more]
UPI001C669F042.330e-2333.512-dehydro-3-deoxy-6-phosphogalactonate aldolase n=... [more]
UPI001B151FE47.140e-2333.672-dehydro-3-deoxy-6-phosphogalactonate aldolase n=... [more]
A0A512DJU2_9PROT1.670e-2231.662-dehydro-3-deoxy-6-phosphogalactonate aldolase n=... [more]
UPI001A9398605.620e-2231.502-dehydro-3-deoxy-6-phosphogalactonate aldolase n=... [more]
A0A520H4I0_9BURK5.890e-2233.012-dehydro-3-deoxy-6-phosphogalactonate aldolase n=... [more]
A0A089YMG6_9PSED1.330e-2132.992-dehydro-3-deoxy-6-phosphogalactonate aldolase n=... [more]
UPI001663D7131.330e-2133.14bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-d... [more]
UPI001E4097A31.800e-2129.382-dehydro-3-deoxy-6-phosphogalactonate aldolase n=... [more]
UPI00099075181.980e-2130.612-dehydro-3-deoxy-6-phosphogalactonate aldolase n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5048contigH-paniculata_contig5048:9905..14032 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score107.5
Seed ortholog evalue9.7e-21
Seed eggNOG ortholog1336243.JAEA01000008_gene1089
Preferred nameeda
KEGG rclassRC00307,RC00308,RC00435
KEGG koko:K01625,ko:K01631
KEGG ReactionR00470,R01064,R05605
KEGG Pathwayko00030,ko00052,ko00630,ko01100,ko01120,ko01200,map00030,map00052,map00630,map01100,map01120,map01200
KEGG ModuleM00008,M00061,M00308,M00552,M00631
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.PFAM KDPG and KHG aldolase
EggNOG OGs1JVDB@119045,1RD0T@1224,2U7AQ@28211,COG0800@1,COG0800@2
Ec32 ortholog description2-keto-3-deoxy-6-phosphogluconate aldolase
Ec32 orthologEc-27_004070.1
EC4.1.2.14,4.1.2.21,4.1.3.42
COG Functional cat.G
Best tax levelMethylobacteriaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons2
Model size1106
Cds size774
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5048.12310.1prot_H-paniculata_contig5048.12310.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5048 9936..13731 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930483.225918-UTR-H-paniculata_contig5048:9904..99351622930483.225918-UTR-H-paniculata_contig5048:9904..9935Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5048 9905..9935 +
1691481312.2332385-UTR-H-paniculata_contig5048:9904..99351691481312.2332385-UTR-H-paniculata_contig5048:9904..9935Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5048 9905..9935 +
1622930483.2739258-UTR-H-paniculata_contig5048:13731..140321622930483.2739258-UTR-H-paniculata_contig5048:13731..14032Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5048 13732..14032 +
1691481312.2778554-UTR-H-paniculata_contig5048:13731..140321691481312.2778554-UTR-H-paniculata_contig5048:13731..14032Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5048 13732..14032 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930483.2428703-CDS-H-paniculata_contig5048:9935..102801622930483.2428703-CDS-H-paniculata_contig5048:9935..10280Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5048 9936..10280 +
1691481312.247879-CDS-H-paniculata_contig5048:9935..102801691481312.247879-CDS-H-paniculata_contig5048:9935..10280Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5048 9936..10280 +
1622930483.258807-CDS-H-paniculata_contig5048:13302..137311622930483.258807-CDS-H-paniculata_contig5048:13302..13731Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5048 13303..13731 +
1691481312.2684982-CDS-H-paniculata_contig5048:13302..137311691481312.2684982-CDS-H-paniculata_contig5048:13302..13731Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5048 13303..13731 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5048.12310.1

>prot_H-paniculata_contig5048.12310.1 ID=prot_H-paniculata_contig5048.12310.1|Name=mRNA_H-paniculata_contig5048.12310.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=258bp
MILLTHWRGKLFLLYLALVPHVVRCFVARVKQPCRPSGKHDLWTRILETS
WPLAVLRDLDVERGEEIASTLYAADFRMVSVTVDTKGFEKIVRECCDLQL
PGMVIGVSSVTSAEQVDTAFECGAEFISSTCLDLAVVRRTKELGMLSIPG
VSTESQATEAVAAGGDILKVFPANKISPATTQRIVNVSYDTPVIVAGGVE
VVDLKSFSSAGVAGFAVGRTLFTPDMTSSGLKVKAERFMRAARTLSWAQL
NRQEARR*
back to top

mRNA from alignment at H-paniculata_contig5048:9905..14032+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5048.12310.1 ID=mRNA_H-paniculata_contig5048.12310.1|Name=mRNA_H-paniculata_contig5048.12310.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4128bp|location=Sequence derived from alignment at H-paniculata_contig5048:9905..14032+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGCTGTGATGTAATATTGCTGTTATAAACCATGATATTGCTGACGCACT
GGCGTGGCAAGCTTTTCTTGCTTTATCTTGCACTGGTTCCACACGTGGTT
CGATGCTTCGTTGCTAGAGTGAAGCAACCATGCAGGCCGTCAGGGAAACA
TGATCTCTGGACAAGAATATTAGAGACTAGCTGGCCTCTAGCCGTTCTGC
GTGACCTTGACGTGGAGAGGGGCGAAGAGATTGCCTCTACGCTCTACGCG
GCAGACTTTCGCATGGTTTCGGTGACTGTAGACACCAAAGGATTCGAAAA
AATTGTCCGTGAATGTTGTGATCTACAGTTGCCTGGCATGGTGATCGGGG
TATCATCTGTAACAAGTGCTGAACAGGTATGATGTCAATTTATTTACACG
TGCTTCTTGCTGGCATGTAACATGTACTTTTGTCGATGATTCGCTGTCTA
TATATCATAGTACAGGACTGACGTACAGACCAAAGTACTGAGTGTGCCAC
GTCTTGGGTCGTAATATTGCCCCAAATTGAGCTTAGCTGTCTACTTTAGC
ACCTATCTCAAGTTGCTTATACATGCCGCTGTTTTGCTACGGCGTCTGTC
TGATATGCATATTATCAGCATTACGTTCAATATAAAAGTTCAGAGTAGAG
CTCCAAAACTTGAACACAATCAGGGCATTCAACTGCTCATGACCTCGGCC
GATGATGGATTGGTTCACCAAGATATCGGACATACCACGTACCGCCGGGA
GACCACCTAATATTTTTATGACATCAGCTAGTCAGTGTAGTTAATCCCTT
GGTACCTTCATATGGCACTACCAGGCAGCCTTGCCAAAGACAAACAACCG
GTCACAAACTATCACATACCCTGTCCCGCCTTTGTCTCATAACCGGTACC
TCGACTGCCAACGGGCTTGTCATCTCCCATCGCCGATATTACTCAAAGCT
GCCGACCACCGAACATATGTAGCCGAGGTTGAGTGTAAAGATGCTATACA
CCTGGCGCTGTATATGACAGTCATCTGACTTTACTGTAAATATTGTGTAC
ATGTCGGCCCTTGGTTGCAAATCAGGGCTTCCTTGTTTTGCATGGATGGA
TCTCTCACTGTATACACAACCATATACATCCACAGGTAACTTCGTACTGT
TACCATTATTTACGAAAGAAGGTGACTATATCGTGCATTCGAATTTCTAA
TGGGCCCTGTTGATTATGTATTCACTCCCTCTGTCCCATAAGCCTGCTCC
GTTAGCTATTTATAGCATATCTCTTCAGGATGGTGTCCGATTTCAAAACG
GATTGTTGCGTTGGATTCCGTGGCGTTTTTCCCATCTAACAAAAATTGTG
CTGAATGAAATGGTCCGAAATTTGTCCCGAAAAAAACAAGTGTTCTTTTC
GACCTTTTCGCCACTCGCGACTGGTTTTTCGGCTCATTCCTTGGTCCCGG
AACCCCAGAAGCGCTACCACTATTTGCTACGAATCCTCGGACTGCCTACA
ATAGCCCGTCGAAGAGACCTGATCGCGAGCGCTCCGAGTCCGTCCACTGG
GATCTAATCTCCATCAGCTGGTGGGAGCTCGTAATCTGGTCGCAGTGGCA
ACAATTGCGAGCTGAGCGAAGAGGGTCGCAACGCGCTTGCTCAGCGATAC
GCGCTGGCTCTCCCTCCCGGCGAAGTGAGGCTCCCAGCCGGCGTCGGGCC
GAAGTTGGCTGAAGAATTCGGGGTCACCGAGAGGTACCCGCGGTTGCTGT
GGGCGCGCGTGAAAAAACAACTCGACGAAGGGAATGTGATCTCTCTGAAA
ACACGGGGGAGTGCTCGCCGGCCGTCGGACTTGACGCCGTGGAAACAGGG
CAAGATCCGAGAAATCAACGCCGCAAATCGCACGCTGGCGCTGGACCAAC
TATCCGCCAAGCTTGCCGAGGTCGGTCTCACCGTCGGCAGCAGCAAGCTT
GCTCGCTGGCTCAAACTCGTGGGGGCAACGAGGGTTCAGCGACGGATAAC
CCCCTCGCTTTCTTTCCATCACAAAAATAACCGCGTGGACTTAATCCTCA
ACCACATTTCCCGCAATCGCAGAGTGTTCACGGCTGGCTTCAACACACTT
CACAATGACGAGGCGTGGTTCTACCTCATTCGCGAAAAGGAAAAGGCGCG
AATGTTCCCTGGGGAAGAAAACGTTGGCTTGATCAAGGTGCAGCACAAGA
GTCACATCCCCAAAGTGATCTGTATCTGCACCGTTTCGTGCCCTGATCCT
CAACACGACTTCGACGGAAAGATCAGAATCTGGTGCGTCTGCACGGTGAG
AGAGGCACAAAGGACTACCGCCTGGCACGCTAGGGGTGACACGTACGAGG
TCGACGTCACCATCGATGCAGAATGGTACCGGGAGTGGTACGTCAACAAC
CTCTTGCCGGAGGCTAAGAAGATGTGATGGTTCGAGGGGAGGTCATCGCG
CAACAAGACGGTGCGACACCCCACACGGGCAAGGGTACGCCACGGGCCTT
GAACAACGCGGGGAAGGAGGGGGGGTGGAGTGTGAAGCTCTCAACGCAGC
CTGCGCAGTCGCCGGATCTTAACATGAACGATTTGGGATTTTTTGCGCCT
CTGAAGAGTAGGGTATGGGGAGCGCGTTACGGCACAATCGACGACCTTGT
GGATGGAGTAAAGCATGCACAACACTTACGATGTAGATACATTAGAGAGA
ATATGACAAAGTCTATTCAAGAGGAACAATCAGGTTTTGCGAGCCATGGG
AGGGAACGACTTCGAGGTAAAGCACACAGGCACAAAAAAAGGCAGCGGGA
AGAGGGATTAGTAAAAAAGCCGTCCAGGTGGACCAAGCTTCCGCCGTGGT
GGCGCTCAACTCGTGGCTTGATGGTGTTGACCAAGAATAATACGATATTT
TATTTAGACGGGAAAAAAGTCAAGGAATCCAACGCGACAATCCATTTCGA
AATCGGACATCCTGAAGAGTTATGCGGTAAATAGCTAACGGAACAGACTT
ACGGGACAGATGGAGTACAAAGTGGTACACCCTGAGTTTTTTTCACCATC
GAAAACATGGTGCACGTGTCCTCATTTACTCGAGTTGTTTTTTAGATACA
GCACGAAGGGGACTTTTTGCTACGTTTTGAGGGGGAAATGCGATATTTTA
ATCCCGAAAAGAGTGCTTTCGCACAACGCTGTGGGGCACGGAAATAGTGA
AAACCCTAAAATAGTTACAATGCGATCGAGGAGCATTGGGTCCCCCAAAT
AAAGGTCAATGGCCATAACTTTAGGTTATTAGGGAAGCACTGTTTTGGGA
TTGAACCTCATTTTGGAAGACACAGTGTTCATGTGTGATGAAGCAGCGCC
CCACGTTCCACCAACGCTCTTTCTGCACTTGTTGCATACTCTATTTAGGT
GGACACCGCGTTTGAGTGTGGAGCAGAGTTCATCAGCAGCACTTGCTTGG
ATTTGGCCGTTGTCAGGCGCACCAAAGAATTGGGCATGCTTAGTATACCG
GGGGTCTCTACTGAGTCCCAGGCAACCGAGGCTGTTGCCGCCGGGGGTGA
TATCTTGAAGGTTTTCCCTGCCAATAAAATATCCCCAGCTACTACACAAA
GAATAGTTAATGTATCGTACGATACCCCTGTGATTGTAGCAGGGGGGGTT
GAAGTCGTCGATTTGAAAAGTTTCTCGAGTGCAGGTGTGGCAGGTTTCGC
GGTTGGCAGAACATTGTTCACACCCGACATGACTTCAAGCGGTTTAAAGG
TGAAAGCGGAGAGGTTCATGCGCGCGGCCCGAACACTATCGTGGGCGCAG
CTTAATCGTCAGGAGGCACGAAGATGATTCTCAATGGTGTTCTATCTATT
CTCGTACACTCTTGATGCTGTCTCCCTAGCAGCGCTACAAAAAGGCGGTG
GCATTTGATATCCATGTTGCGTCAGTGGTGAAGTTACGAGTGTGCATTGT
ATTGTTCGTGTCCTCGGGTGTGTATTGAACGACGCGATGAGTGTGCAATT
AGAACGTGTTGCTAAATAGTTATGGCTGTCAACTTGAATGATTCGTGGTA
TTCATGTACTCTTCAAAGTTTGAACTTTTCATCATTAAATCGTCAAAAAC
GAGAACAGCTACTCATGTCGAGACAGGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig5048:9905..14032+

>mRNA_H-paniculata_contig5048.12310.1 ID=mRNA_H-paniculata_contig5048.12310.1|Name=mRNA_H-paniculata_contig5048.12310.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1548bp|location=Sequence derived from alignment at H-paniculata_contig5048:9905..14032+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATATTGCTGACGCACTGGCGTGGCAAGCTTTTCTTGCTTTATCTTGC
ACTGGTTCCACACGTGGTTCGATGCTTCGTTGCTAGAGTGAAGCAACCAT
GCAGGCCGTCAGGGAAACATGATCTCTGGACAAGAATATTAGAGACTAGC
TGGCCTCTAGCCGTTCTGCGTGACCTTGACGTGGAGAGGGGCGAAGAGAT
TGCCTCTACGCTCTACGCGGCAGACTTTCGCATGGTTTCGGTGACTGTAG
ACACCAAAGGATTCGAAAAAATTGTCCGTGAATGTTGTGATCTACAGTTG
CCTGGCATGGTGATCGGGGTATCATCTGTAACAAGTGCTGAACAGATGAT
ATTGCTGACGCACTGGCGTGGCAAGCTTTTCTTGCTTTATCTTGCACTGG
TTCCACACGTGGTTCGATGCTTCGTTGCTAGAGTGAAGCAACCATGCAGG
CCGTCAGGGAAACATGATCTCTGGACAAGAATATTAGAGACTAGCTGGCC
TCTAGCCGTTCTGCGTGACCTTGACGTGGAGAGGGGCGAAGAGATTGCCT
CTACGCTCTACGCGGCAGACTTTCGCATGGTTTCGGTGACTGTAGACACC
AAAGGATTCGAAAAAATTGTCCGTGAATGTTGTGATCTACAGTTGCCTGG
CATGGTGATCGGGGTATCATCTGTAACAAGTGCTGAACAGGTGGACACCG
CGTTTGAGTGTGGAGCAGAGTTCATCAGCAGCACTTGCTTGGATTTGGCC
GTTGTCAGGCGCACCAAAGAATTGGGCATGCTTAGTATACCGGGGGTCTC
TACTGAGTCCCAGGCAACCGAGGCTGTTGCCGCCGGGGGTGATATCTTGA
AGGTTTTCCCTGCCAATAAAATATCCCCAGCTACTACACAAAGAATAGTT
AATGTATCGTACGATACCCCTGTGATTGTAGCAGGGGGGGTTGAAGTCGT
CGATTTGAAAAGTTTCTCGAGTGCAGGTGTGGCAGGTTTCGCGGTTGGCA
GAACATTGTTCACACCCGACATGACTTCAAGCGGTTTAAAGGTGAAAGCG
GAGAGGTTCATGCGCGCGGCCCGAACACTATCGTGGGCGCAGCTTAATCG
TCAGGAGGCACGAAGATGAGTGGACACCGCGTTTGAGTGTGGAGCAGAGT
TCATCAGCAGCACTTGCTTGGATTTGGCCGTTGTCAGGCGCACCAAAGAA
TTGGGCATGCTTAGTATACCGGGGGTCTCTACTGAGTCCCAGGCAACCGA
GGCTGTTGCCGCCGGGGGTGATATCTTGAAGGTTTTCCCTGCCAATAAAA
TATCCCCAGCTACTACACAAAGAATAGTTAATGTATCGTACGATACCCCT
GTGATTGTAGCAGGGGGGGTTGAAGTCGTCGATTTGAAAAGTTTCTCGAG
TGCAGGTGTGGCAGGTTTCGCGGTTGGCAGAACATTGTTCACACCCGACA
TGACTTCAAGCGGTTTAAAGGTGAAAGCGGAGAGGTTCATGCGCGCGGCC
CGAACACTATCGTGGGCGCAGCTTAATCGTCAGGAGGCACGAAGATGA
back to top