mRNA_H-paniculata_contig50185.12265.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig50185.12265.1
Unique NamemRNA_H-paniculata_contig50185.12265.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig50185.12265.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 2.130e-12
Identity = 41/115 (35.65%), Postives = 65/115 (56.52%), Query Frame = 1 
Query:   10 LENYDRCNEQLFIILVLTSSGVASSFLLRFEPKGFERPNGQLAWFGLIDKYQNSSKQRRRILMRQLDGTTMKQNQDPDVFLARVFHLRDELAHMGEEVSEERLTDIVIEGLTDDY 354
            L+ ++  + QLF IL     G A   L R  P      +G   W  L  K+Q + + RRR L R+L+  TM+   DPD+F+  V+HL ++L  +G  V++E+L DI+++GL  +Y
Sbjct:  193 LDEFEEADSQLFNILYHILIGPAKYVLRRHAPVDESSGSGLAVWKELESKFQPADEHRRRNLERELESATMRTGTDPDIFITHVWHLAEQLRFIGGTVTDEKLGDIILQGLPAEY 307
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BLAST of mRNA_H-paniculata_contig50185.12265.1 vs. uniprot
Match: UPI0010AABFCB (uncharacterized protein LOC108173372 n=1 Tax=Malus domestica TaxID=3750 RepID=UPI0010AABFCB)

HSP 1 Score: 57.0 bits (136), Expect = 3.410e-6
Identity = 36/130 (27.69%), Postives = 66/130 (50.77%), Query Frame = 1 
Query:  193 LMRQLDGTTMKQNQDPDVFLARVFHLRDELAHMGEEVSEERLTDIVIEGLTDDYEQVKYNAERDPEFSLSEIEVTLRNIFANRVAREGSSRKSGGRESAMVATTSVSKSVKFKSKCHACGKIGHVMRDCH 582
            L R+ + T MK ++   V+L R+F + +++   GE++S ER+   ++  L   Y+ +    E   +    EI+  + ++ +  +  +  +  S  R  A +       +V  K KC  CGK+GHV+RDCH
Sbjct:   83 LRREFEYTRMKDSESLSVYLTRLFDIMNQMKSYGEDLSRERVVQKLLISLPRSYDPICSVIEHSKDLETLEIQEVVASLKSFELRLDRHAENSTERAFASL-------NVGGKPKCTGCGKLGHVIRDCH 205
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig50185.12265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KY84_9PHAE2.130e-1235.65Integrase catalytic domain-containing protein n=1 ... [more]
UPI0010AABFCB3.410e-627.69uncharacterized protein LOC108173372 n=1 Tax=Malus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig50185contigH-paniculata_contig50185:693..1286 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size594
Cds size594
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930476.462223-CDS-H-paniculata_contig50185:692..12861622930476.462223-CDS-H-paniculata_contig50185:692..1286Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50185 693..1286 -
1691481308.8398793-CDS-H-paniculata_contig50185:692..12861691481308.8398793-CDS-H-paniculata_contig50185:692..1286Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50185 693..1286 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig50185.12265.1prot_H-paniculata_contig50185.12265.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig50185 693..1286 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig50185.12265.1

>prot_H-paniculata_contig50185.12265.1 ID=prot_H-paniculata_contig50185.12265.1|Name=mRNA_H-paniculata_contig50185.12265.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=198bp
TLALENYDRCNEQLFIILVLTSSGVASSFLLRFEPKGFERPNGQLAWFGL
IDKYQNSSKQRRRILMRQLDGTTMKQNQDPDVFLARVFHLRDELAHMGEE
VSEERLTDIVIEGLTDDYEQVKYNAERDPEFSLSEIEVTLRNIFANRVAR
EGSSRKSGGRESAMVATTSVSKSVKFKSKCHACGKIGHVMRDCHSKTK
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mRNA from alignment at H-paniculata_contig50185:693..1286-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig50185.12265.1 ID=mRNA_H-paniculata_contig50185.12265.1|Name=mRNA_H-paniculata_contig50185.12265.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=594bp|location=Sequence derived from alignment at H-paniculata_contig50185:693..1286- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGCTAGCACTAGAAAACTATGATCGGTGTAACGAACAACTGTTTATCAT
TTTGGTTCTGACTAGCAGCGGTGTTGCGTCTAGTTTTCTTTTGCGTTTCG
AACCGAAAGGCTTTGAAAGGCCCAACGGGCAATTAGCGTGGTTTGGCCTG
ATTGACAAGTATCAGAATTCATCCAAGCAGAGACGCCGTATATTAATGCG
GCAGCTTGACGGGACAACAATGAAGCAAAACCAGGACCCCGATGTATTTT
TGGCCCGTGTTTTTCACCTCAGGGATGAGCTAGCACACATGGGGGAAGAA
GTGTCGGAAGAACGATTGACCGATATCGTTATAGAAGGACTTACTGACGA
TTATGAGCAAGTGAAATATAATGCAGAGCGCGACCCCGAGTTTAGCTTGA
GCGAAATTGAGGTCACTCTGCGTAATATATTTGCGAATCGTGTAGCACGA
GAGGGTTCATCACGAAAATCTGGAGGACGAGAATCTGCCATGGTGGCGAC
AACTTCGGTATCTAAATCAGTTAAATTTAAGAGCAAGTGCCACGCCTGTG
GCAAAATTGGTCATGTTATGCGTGATTGTCATTCAAAGACAAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig50185:693..1286-

>mRNA_H-paniculata_contig50185.12265.1 ID=mRNA_H-paniculata_contig50185.12265.1|Name=mRNA_H-paniculata_contig50185.12265.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1188bp|location=Sequence derived from alignment at H-paniculata_contig50185:693..1286- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGCTAGCACTAGAAAACTATGATCGGTGTAACGAACAACTGTTTATCAT
TTTGGTTCTGACTAGCAGCGGTGTTGCGTCTAGTTTTCTTTTGCGTTTCG
AACCGAAAGGCTTTGAAAGGCCCAACGGGCAATTAGCGTGGTTTGGCCTG
ATTGACAAGTATCAGAATTCATCCAAGCAGAGACGCCGTATATTAATGCG
GCAGCTTGACGGGACAACAATGAAGCAAAACCAGGACCCCGATGTATTTT
TGGCCCGTGTTTTTCACCTCAGGGATGAGCTAGCACACATGGGGGAAGAA
GTGTCGGAAGAACGATTGACCGATATCGTTATAGAAGGACTTACTGACGA
TTATGAGCAAGTGAAATATAATGCAGAGCGCGACCCCGAGTTTAGCTTGA
GCGAAATTGAGGTCACTCTGCGTAATATATTTGCGAATCGTGTAGCACGA
GAGGGTTCATCACGAAAATCTGGAGGACGAGAATCTGCCATGGTGGCGAC
AACTTCGGTATCTAAATCAGTTAAATTTAAGAGCAAGTGCCACGCCTGTG
GCAAAATTGGTCATGTTATGCGTGATTGTCATTCAAAGACAAAAACGCTA
GCACTAGAAAACTATGATCGGTGTAACGAACAACTGTTTATCATTTTGGT
TCTGACTAGCAGCGGTGTTGCGTCTAGTTTTCTTTTGCGTTTCGAACCGA
AAGGCTTTGAAAGGCCCAACGGGCAATTAGCGTGGTTTGGCCTGATTGAC
AAGTATCAGAATTCATCCAAGCAGAGACGCCGTATATTAATGCGGCAGCT
TGACGGGACAACAATGAAGCAAAACCAGGACCCCGATGTATTTTTGGCCC
GTGTTTTTCACCTCAGGGATGAGCTAGCACACATGGGGGAAGAAGTGTCG
GAAGAACGATTGACCGATATCGTTATAGAAGGACTTACTGACGATTATGA
GCAAGTGAAATATAATGCAGAGCGCGACCCCGAGTTTAGCTTGAGCGAAA
TTGAGGTCACTCTGCGTAATATATTTGCGAATCGTGTAGCACGAGAGGGT
TCATCACGAAAATCTGGAGGACGAGAATCTGCCATGGTGGCGACAACTTC
GGTATCTAAATCAGTTAAATTTAAGAGCAAGTGCCACGCCTGTGGCAAAA
TTGGTCATGTTATGCGTGATTGTCATTCAAAGACAAAA
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