prot_H-paniculata_contig50124.12257.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig50124.12257.1
Unique Nameprot_H-paniculata_contig50124.12257.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length41
Homology
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BLAST of mRNA_H-paniculata_contig50124.12257.1 vs. uniprot
Match: A0A6H5KBX5_9PHAE (DNA-(apurinic or apyrimidinic site) endonuclease n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KBX5_9PHAE)

HSP 1 Score: 48.1 bits (113), Expect = 3.270e-5
Identity = 20/31 (64.52%), Postives = 26/31 (83.87%), Query Frame = 0 
Query:    3 EHDLQGRVIALEFASFTLVILYVPNNGTKEE 33
            EHD +GRVIA+E+ S T++ LYVPNNG+K E
Sbjct:  193 EHDREGRVIAIEYPSVTVLALYVPNNGSKAE 223
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig50124.12257.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KBX5_9PHAE3.270e-564.52DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 31..40
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..26
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 27..40
NoneNo IPR availableTMHMMTMhelixcoord: 10..27
IPR036691Endonuclease/exonuclease/phosphatase superfamilyGENE3D3.60.10.10coord: 1..40
e-value: 1.6E-5
score: 26.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig50124contigH-paniculata_contig50124:261..1168 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig50124.12257.1mRNA_H-paniculata_contig50124.12257.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig50124 144..1168 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig50124.12257.1 ID=prot_H-paniculata_contig50124.12257.1|Name=mRNA_H-paniculata_contig50124.12257.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=41bp
SKEHDLQGRVIALEFASFTLVILYVPNNGTKEEKNKTHNK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036691Endo/exonu/phosph_ase_sf