mRNA_H-paniculata_contig50124.12257.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig50124.12257.1
Unique NamemRNA_H-paniculata_contig50124.12257.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig50124.12257.1 vs. uniprot
Match: A0A446RVH6_TRITD (Uncharacterized protein n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446RVH6_TRITD)

HSP 1 Score: 90.5 bits (223), Expect = 2.400e-21
Identity = 42/80 (52.50%), Postives = 52/80 (65.00%), Query Frame = 1 
Query:    1 SKEHDLQGRVIALEFASFTLVILYVPNNGTKEEKNKTHNK*EDWDANLRAFVNCYDKPLIICGDLNVAHENSDLTHPAFF 240
            S +HD  GRVI +EF SF L+  Y PNNG KEE+N    +   WD  +  FV   DKPLI CGDLNV+H+  D++HP FF
Sbjct:   50 SSKHDADGRVIIVEFESFLLLNTYAPNNGWKEEENSFQRR-RKWDKRMLEFVQQVDKPLIWCGDLNVSHDEIDVSHPNFF 128
[Close]
BLAST of mRNA_H-paniculata_contig50124.12257.1 vs. uniprot
Match: K3Z6P3_SETIT (DNA-(apurinic or apyrimidinic site) endonuclease n=12 Tax=Paniceae TaxID=147428 RepID=K3Z6P3_SETIT)

HSP 1 Score: 94.7 bits (234), Expect = 3.600e-21
Identity = 43/80 (53.75%), Postives = 53/80 (66.25%), Query Frame = 1 
Query:    1 SKEHDLQGRVIALEFASFTLVILYVPNNGTKEEKNKTHNK*EDWDANLRAFVNCYDKPLIICGDLNVAHENSDLTHPAFF 240
            S +H+  GRVI +EF SF L+  Y PNNG KEE+N    +   WD  +  FV C DKPLI CGDLNV+HE  D++HP FF
Sbjct:  200 SSKHETDGRVIIVEFESFLLLNTYAPNNGWKEEENSFQRR-RKWDKRMLEFVQCVDKPLIWCGDLNVSHEEIDVSHPDFF 278
[Close]
BLAST of mRNA_H-paniculata_contig50124.12257.1 vs. uniprot
Match: A0A3L6T3J5_PANMI (DNA-(apurinic or apyrimidinic site) endonuclease n=2 Tax=Panicum TaxID=4539 RepID=A0A3L6T3J5_PANMI)

HSP 1 Score: 90.1 bits (222), Expect = 8.100e-20
Identity = 42/80 (52.50%), Postives = 52/80 (65.00%), Query Frame = 1 
Query:    1 SKEHDLQGRVIALEFASFTLVILYVPNNGTKEEKNKTHNK*EDWDANLRAFVNCYDKPLIICGDLNVAHENSDLTHPAFF 240
            S +H+  GRVI +EF SF L+  Y PNNG KEE+N    +   WD  +  FV   DKPLI CGDLNV+HE  D++HP FF
Sbjct:  115 SSKHETDGRVIIVEFESFLLLNTYAPNNGWKEEENSFQRR-RKWDKKMLEFVQRVDKPLIWCGDLNVSHEEIDVSHPDFF 193
[Close]
BLAST of mRNA_H-paniculata_contig50124.12257.1 vs. uniprot
Match: A0A446R4R7_TRITD (DNA-(apurinic or apyrimidinic site) endonuclease n=2 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446R4R7_TRITD)

HSP 1 Score: 90.5 bits (223), Expect = 8.140e-20
Identity = 42/80 (52.50%), Postives = 52/80 (65.00%), Query Frame = 1 
Query:    1 SKEHDLQGRVIALEFASFTLVILYVPNNGTKEEKNKTHNK*EDWDANLRAFVNCYDKPLIICGDLNVAHENSDLTHPAFF 240
            S +HD  GRVI +EF SF L+  Y PNNG KEE+N    +   WD  +  FV   DKPLI CGDLNV+H+  D++HP FF
Sbjct:  165 STKHDADGRVIIVEFESFLLLNTYAPNNGWKEEENSFQRR-RKWDKRMSEFVQQVDKPLIWCGDLNVSHDEIDVSHPDFF 243
[Close]
BLAST of mRNA_H-paniculata_contig50124.12257.1 vs. uniprot
Match: A0A811R944_9POAL (DNA-(apurinic or apyrimidinic site) endonuclease n=3 Tax=Andropogoneae TaxID=147429 RepID=A0A811R944_9POAL)

HSP 1 Score: 89.4 bits (220), Expect = 9.410e-20
Identity = 42/80 (52.50%), Postives = 51/80 (63.75%), Query Frame = 1 
Query:    1 SKEHDLQGRVIALEFASFTLVILYVPNNGTKEEKNKTHNK*EDWDANLRAFVNCYDKPLIICGDLNVAHENSDLTHPAFF 240
            S +H+  GRVI  EF SF L+  Y PNNG KEE+N    +   WD  +  FV   DKPLI CGDLNV+HE  D++HP FF
Sbjct:  169 SSKHETDGRVIIAEFESFLLLNTYAPNNGWKEEENSFQRR-RKWDKRMLEFVQHVDKPLIWCGDLNVSHEEIDVSHPDFF 247
[Close]
BLAST of mRNA_H-paniculata_contig50124.12257.1 vs. uniprot
Match: A0A3B6IQB9_WHEAT (DNA-(apurinic or apyrimidinic site) endonuclease n=14 Tax=Pooideae TaxID=147368 RepID=A0A3B6IQB9_WHEAT)

HSP 1 Score: 90.5 bits (223), Expect = 9.660e-20
Identity = 42/80 (52.50%), Postives = 52/80 (65.00%), Query Frame = 1 
Query:    1 SKEHDLQGRVIALEFASFTLVILYVPNNGTKEEKNKTHNK*EDWDANLRAFVNCYDKPLIICGDLNVAHENSDLTHPAFF 240
            S +HD  GRVI +EF SF L+  Y PNNG KEE+N    +   WD  +  FV   DKPLI CGDLNV+H+  D++HP FF
Sbjct:  164 SSKHDADGRVIIVEFESFLLLNTYAPNNGWKEEENSFQRR-RKWDKRMLEFVQQVDKPLIWCGDLNVSHDEIDVSHPNFF 242
[Close]
BLAST of mRNA_H-paniculata_contig50124.12257.1 vs. uniprot
Match: A0A453HG17_AEGTS (DNA-(apurinic or apyrimidinic site) endonuclease n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453HG17_AEGTS)

HSP 1 Score: 87.4 bits (215), Expect = 1.280e-19
Identity = 40/80 (50.00%), Postives = 52/80 (65.00%), Query Frame = 1 
Query:    1 SKEHDLQGRVIALEFASFTLVILYVPNNGTKEEKNKTHNK*EDWDANLRAFVNCYDKPLIICGDLNVAHENSDLTHPAFF 240
            + +HD  GRVI +EF SF L+  Y PNNG KEE+N    +   WD  +  FV   +KPLI CGDLNV+H+  D++HP FF
Sbjct:    1 ASKHDADGRVIIVEFESFLLLNTYAPNNGWKEEENSFQRR-RKWDKRMLEFVQQVNKPLIWCGDLNVSHDEIDVSHPDFF 79
[Close]
BLAST of mRNA_H-paniculata_contig50124.12257.1 vs. uniprot
Match: A0A0D9XYH2_9ORYZ (DNA-(apurinic or apyrimidinic site) endonuclease n=9 Tax=Oryzinae TaxID=1648021 RepID=A0A0D9XYH2_9ORYZ)

HSP 1 Score: 89.4 bits (220), Expect = 2.400e-19
Identity = 42/80 (52.50%), Postives = 51/80 (63.75%), Query Frame = 1 
Query:    1 SKEHDLQGRVIALEFASFTLVILYVPNNGTKEEKNKTHNK*EDWDANLRAFVNCYDKPLIICGDLNVAHENSDLTHPAFF 240
            S +H+  GRVI  EF SF L+  Y PNNG KEE+N    +   WD  +  FV   DKPLI CGDLNV+HE  D++HP FF
Sbjct:  157 SSKHEADGRVIIAEFESFLLLNTYAPNNGWKEEENSFQRR-RKWDKRMLEFVQQVDKPLIWCGDLNVSHEEIDVSHPDFF 235
[Close]
BLAST of mRNA_H-paniculata_contig50124.12257.1 vs. uniprot
Match: C5YMZ3_SORBI (DNA-(apurinic or apyrimidinic site) endonuclease n=5 Tax=Andropogoneae TaxID=147429 RepID=C5YMZ3_SORBI)

HSP 1 Score: 89.4 bits (220), Expect = 2.600e-19
Identity = 42/80 (52.50%), Postives = 51/80 (63.75%), Query Frame = 1 
Query:    1 SKEHDLQGRVIALEFASFTLVILYVPNNGTKEEKNKTHNK*EDWDANLRAFVNCYDKPLIICGDLNVAHENSDLTHPAFF 240
            S +H+  GRVI  EF SF L+  Y PNNG KEE+N    +   WD  +  FV   DKPLI CGDLNV+HE  D++HP FF
Sbjct:  165 SSKHETDGRVIIAEFESFLLLNTYAPNNGWKEEENSFQRR-RKWDKRMLEFVQHVDKPLIWCGDLNVSHEEIDVSHPDFF 243
[Close]
BLAST of mRNA_H-paniculata_contig50124.12257.1 vs. uniprot
Match: A0A2S3HD16_9POAL (DNA-(apurinic or apyrimidinic site) endonuclease n=1 Tax=Panicum hallii TaxID=206008 RepID=A0A2S3HD16_9POAL)

HSP 1 Score: 87.8 bits (216), Expect = 2.650e-19
Identity = 41/79 (51.90%), Postives = 51/79 (64.56%), Query Frame = 1 
Query:    1 SKEHDLQGRVIALEFASFTLVILYVPNNGTKEEKNKTHNK*EDWDANLRAFVNCYDKPLIICGDLNVAHENSDLTHPAF 237
            S +H+  GRVI +EF SF L+  Y PNNG KEE+N    +   WD  +  FV   DKPLI CGDLNV+HE  D++HP F
Sbjct:  162 SSKHETDGRVIIVEFESFLLLNTYAPNNGWKEEENSFQRR-RKWDKRMLEFVQRIDKPLIWCGDLNVSHEEIDVSHPDF 239
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig50124.12257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A446RVH6_TRITD2.400e-2152.50Uncharacterized protein n=1 Tax=Triticum turgidum ... [more]
K3Z6P3_SETIT3.600e-2153.75DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A3L6T3J5_PANMI8.100e-2052.50DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A446R4R7_TRITD8.140e-2052.50DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A811R944_9POAL9.410e-2052.50DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A3B6IQB9_WHEAT9.660e-2052.50DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A453HG17_AEGTS1.280e-1950.00DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A0D9XYH2_9ORYZ2.400e-1952.50DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
C5YMZ3_SORBI2.600e-1952.50DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A2S3HD16_9POAL2.650e-1951.90DNA-(apurinic or apyrimidinic site) endonuclease n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig50124contigH-paniculata_contig50124:144..1168 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Model size240
Cds size123
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig50124.12257.1prot_H-paniculata_contig50124.12257.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig50124 261..1168 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930475.717588-UTR-H-paniculata_contig50124:143..2601622930475.717588-UTR-H-paniculata_contig50124:143..260Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig50124 144..260 -
1691481308.5202482-UTR-H-paniculata_contig50124:143..2601691481308.5202482-UTR-H-paniculata_contig50124:143..260Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig50124 144..260 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930475.7347324-CDS-H-paniculata_contig50124:260..2611622930475.7347324-CDS-H-paniculata_contig50124:260..261Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50124 261..261 -
1691481308.5306604-CDS-H-paniculata_contig50124:260..2611691481308.5306604-CDS-H-paniculata_contig50124:260..261Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50124 261..261 -
1622930475.757417-CDS-H-paniculata_contig50124:1001..10231622930475.757417-CDS-H-paniculata_contig50124:1001..1023Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50124 1002..1023 -
1691481308.5405943-CDS-H-paniculata_contig50124:1001..10231691481308.5405943-CDS-H-paniculata_contig50124:1001..1023Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50124 1002..1023 -
1622930475.7767422-CDS-H-paniculata_contig50124:1068..11681622930475.7767422-CDS-H-paniculata_contig50124:1068..1168Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50124 1069..1168 -
1691481308.5497172-CDS-H-paniculata_contig50124:1068..11681691481308.5497172-CDS-H-paniculata_contig50124:1068..1168Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50124 1069..1168 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig50124.12257.1

>prot_H-paniculata_contig50124.12257.1 ID=prot_H-paniculata_contig50124.12257.1|Name=mRNA_H-paniculata_contig50124.12257.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=41bp
SKEHDLQGRVIALEFASFTLVILYVPNNGTKEEKNKTHNK*
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mRNA from alignment at H-paniculata_contig50124:144..1168-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig50124.12257.1 ID=mRNA_H-paniculata_contig50124.12257.1|Name=mRNA_H-paniculata_contig50124.12257.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1025bp|location=Sequence derived from alignment at H-paniculata_contig50124:144..1168- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGAAAGAGCACGATCTGCAGGGACGAGTGATAGCATTGGAGTTTGCTTC
TTTCACGTTGGTGATTCTGTACGTCCCCAACAATGGGACTAAGGAAGAAA
GTTTCCGCCGCAGGCAAGCAATACGCAATAAGAAGCAATATTGAGAGAAC
AAAACGCACAATAAATAGTAGTAGACAACAAGAAGCATGAAATTGCAAAA
GGAGGAGGAGGTGGAGGAAACGTTGTTGTTGTTGTTGTTGTTGTTGATGA
TATTGTTGTTGTTGATGGTGTTGTTGTCGTTGCTGTTGCCGTGAATCTTT
TGCTCTCGAAGTGACCGTCGGCAGAACGGAAAATAATCTGATCTGATCTG
AAAGAACCGACCCACGCCGGCCGACCGACCGGACTGACTGAGTGAGTGTG
TTCTTGTTCTTGTTCTTGTTCCCTGACGATTACGTTGCGCCCCAAAAATG
TGCCTTGTTCATAGTGTTCTGTTCTTCCTTTTTTTTCTGTTGATTTTGTC
ATGTTGCCCTTTCAAAACGAACGCGTGTATTTATCTGTTTTCCGTTTTCA
ACATGTGTTTGTGTGTTTGTGTTTGTGTTTGTGTTTGTGTTTGTGTTTGT
GTTTGTGTCTGCTTGTGTCTGTTTGTGTCTGTTTGTGTCTGTTCGTGTCT
GTTTGTCTGTTTGTGTCTGTTCGTGTCAGGTGATCTGTGTGTGATCTGTG
TGTGATCTGTGTGTGATCTGTGTATGTTCTGTGTGTGTGTACGTTTTATG
TCCCGTCCCAAAGCGTGCTTCACTGTGTAGTATTTCAAAAGGACGTATCT
CCCTGCCCGCTCCCTTCCCTTCTCTAAGCGAAGGATAGATACAGTCGATG
ATTGCTACTGATGTATTTCGCTGTTGTTCTCTTATATCTGAATTTTCTGT
CTGTCAGGGAGGATTGGGACGCCAACCTTCGAGCATTCGTGAACTGCTAC
GACAAGCCCTTGATCATCTGCGGTGACCTCAACGTGGCGCACGAGAACTC
AGATCTGACACACCCCGCGTTTTTC
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Coding sequence (CDS) from alignment at H-paniculata_contig50124:144..1168-

>mRNA_H-paniculata_contig50124.12257.1 ID=mRNA_H-paniculata_contig50124.12257.1|Name=mRNA_H-paniculata_contig50124.12257.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=246bp|location=Sequence derived from alignment at H-paniculata_contig50124:144..1168- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGAAAGAGCACGATCTGCAGGGACGAGTGATAGCATTGGAGTTTGCTTC
TTTCACGTTGGTGATTCTGTACGTCCCCAACAATGGGACTAAGGAAGAAA
TCGAAAGAGCACGATCTGCAGGGACGAGTGATAGCATTGGAGTTTGCTTC
TTTCACGTTGGTGATTCTGTACGTCCCCAACAATGGGACTAAGGAAGAAA
AGAACAAAACGCACAATAAATAAGAACAAAACGCACAATAAATAGG
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