mRNA_H-paniculata_contig5011.12253.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5011.12253.1
Unique NamemRNA_H-paniculata_contig5011.12253.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5011.12253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5011contigH-paniculata_contig5011:4871..5788 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size490
Cds size489
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930475.3303902-CDS-H-paniculata_contig5011:4870..52081622930475.3303902-CDS-H-paniculata_contig5011:4870..5208Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5011 4871..5208 -
1691481308.359899-CDS-H-paniculata_contig5011:4870..52081691481308.359899-CDS-H-paniculata_contig5011:4870..5208Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5011 4871..5208 -
1622930475.3491917-CDS-H-paniculata_contig5011:5637..57881622930475.3491917-CDS-H-paniculata_contig5011:5637..5788Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5011 5638..5788 -
1691481308.3680625-CDS-H-paniculata_contig5011:5637..57881691481308.3680625-CDS-H-paniculata_contig5011:5637..5788Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5011 5638..5788 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5011.12253.1prot_H-paniculata_contig5011.12253.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5011 4871..5788 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5011.12253.1

>prot_H-paniculata_contig5011.12253.1 ID=prot_H-paniculata_contig5011.12253.1|Name=mRNA_H-paniculata_contig5011.12253.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=163bp
METDLRVRGSFPHNTGGDGEQWGGRPLVSRLYKSDVTVLAAQLQLTRTEL
LEEYNLIRRRMEKTRTSQSKRSSRSGGYSTCSGGGSGGEGGGANNNSGLP
LAPDQLLHPRRRASMPARMSSSCCQDTLNTPTPTRADWYVEECLSPTVTT
PQTWSDAERDRSG
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mRNA from alignment at H-paniculata_contig5011:4871..5788-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5011.12253.1 ID=mRNA_H-paniculata_contig5011.12253.1|Name=mRNA_H-paniculata_contig5011.12253.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=918bp|location=Sequence derived from alignment at H-paniculata_contig5011:4871..5788- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGACGGACTTGAGAGTTCGTGGGTCCTTTCCGCACAACACCGGCGG
CGATGGCGAGCAATGGGGCGGCCGGCCGTTGGTTTCGCGACTATACAAGA
GCGATGTTACGGTTCTGGCGGCGCAACTGCAGCTGACGAGGACGGAACTC
TGTGGGTAGATCTGGATAGGGGAATGGTACTTTTCGCGTAGATTTTTGTG
CTTTTCCTTTCTTCATCCTTGGGATAGCGTGCGATTGGCTACGGTCTTCG
GTCTGTCTGTTGTTGTTGCTGCACGGTATTATGCTTCTATCGTGGAGCAG
TGCATGGGCTATCTGTGCGTCACTTACGTCGCGGTCTAAGTAGGGCTTGA
AGGGGAGAGACAGCTATTGCGAATTGGCAGGCAAAATACTACGAATTCTT
GTACTCGTGTGTATAACGTGCATCACGGCAAAACAAAGCAATTGGCGTGG
ATTGTTTGGTTAACTTCAAGATGACGTAAATATTGAAAAGTTCCTCGCAC
GTCAAGAGAGGGTGATGCTATACGTGCGATTTTTTTCATAGCTTTACGAC
CCCCCCCCCCCTCTCTCTCCCGCATGCCAGTGGAAGAGTATAATCTCATA
CGAAGGAGGATGGAGAAGACGCGGACGAGCCAGAGCAAACGCTCGTCCCG
TTCCGGTGGGTACTCTACCTGTAGCGGCGGAGGAAGCGGCGGCGAAGGCG
GCGGTGCTAACAACAATAGCGGGCTGCCCCTCGCGCCGGACCAGCTTCTC
CATCCGCGACGGCGTGCCTCGATGCCAGCCCGCATGTCCTCCTCATGCTG
CCAAGACACCTTGAACACGCCGACACCTACCAGGGCTGATTGGTATGTGG
AGGAATGCCTTTCCCCTACGGTCACCACACCACAGACTTGGAGTGACGCT
GAGAGAGACAGAAGTGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig5011:4871..5788-

>mRNA_H-paniculata_contig5011.12253.1 ID=mRNA_H-paniculata_contig5011.12253.1|Name=mRNA_H-paniculata_contig5011.12253.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=978bp|location=Sequence derived from alignment at H-paniculata_contig5011:4871..5788- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGACGGACTTGAGAGTTCGTGGGTCCTTTCCGCACAACACCGGCGG
CGATGGCGAGCAATGGGGCGGCCGGCCGTTGGTTTCGCGACTATACAAGA
GCGATGTTACGGTTCTGGCGGCGCAACTGCAGCTGACGAGGACGGAACTC
TATGGAGACGGACTTGAGAGTTCGTGGGTCCTTTCCGCACAACACCGGCG
GCGATGGCGAGCAATGGGGCGGCCGGCCGTTGGTTTCGCGACTATACAAG
AGCGATGTTACGGTTCTGGCGGCGCAACTGCAGCTGACGAGGACGGAACT
CTTGGAAGAGTATAATCTCATACGAAGGAGGATGGAGAAGACGCGGACGA
GCCAGAGCAAACGCTCGTCCCGTTCCGGTGGGTACTCTACCTGTAGCGGC
GGAGGAAGCGGCGGCGAAGGCGGCGGTGCTAACAACAATAGCGGGCTGCC
CCTCGCGCCGGACCAGCTTCTCCATCCGCGACGGCGTGCCTCGATGCCAG
CCCGCATGTCCTCCTCATGCTGCCAAGACACCTTGAACACGCCGACACCT
ACCAGGGCTGATTGGTATGTGGAGGAATGCCTTTCCCCTACGGTCACCAC
ACCACAGACTTGGAGTGACGCTGAGAGAGACAGAAGTGGGTGGAAGAGTA
TAATCTCATACGAAGGAGGATGGAGAAGACGCGGACGAGCCAGAGCAAAC
GCTCGTCCCGTTCCGGTGGGTACTCTACCTGTAGCGGCGGAGGAAGCGGC
GGCGAAGGCGGCGGTGCTAACAACAATAGCGGGCTGCCCCTCGCGCCGGA
CCAGCTTCTCCATCCGCGACGGCGTGCCTCGATGCCAGCCCGCATGTCCT
CCTCATGCTGCCAAGACACCTTGAACACGCCGACACCTACCAGGGCTGAT
TGGTATGTGGAGGAATGCCTTTCCCCTACGGTCACCACACCACAGACTTG
GAGTGACGCTGAGAGAGACAGAAGTGGG
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