prot_H-paniculata_contig5002.12238.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5002.12238.1
Unique Nameprot_H-paniculata_contig5002.12238.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length170
Homology
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BLAST of mRNA_H-paniculata_contig5002.12238.1 vs. uniprot
Match: A0A522N337_9BACT (UvrABC system protein C n=3 Tax=bacterium TaxID=1869227 RepID=A0A522N337_9BACT)

HSP 1 Score: 52.4 bits (124), Expect = 8.490e-5
Identity = 26/44 (59.09%), Postives = 30/44 (68.18%), Query Frame = 0 
Query:  124 RPLLRQCLNDVPDEPGVYVMESVEGCKLYIGKSVKLSARVPSYF 167
            RP L Q L  +PD PGVY+ME   G  LYIGK+V L +RV SYF
Sbjct:    5 RPPLEQTLTQLPDAPGVYLMEDAAGHILYIGKAVSLRSRVRSYF 48
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5002.12238.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A522N337_9BACT8.490e-559.09UvrABC system protein C n=3 Tax=bacterium TaxID=18... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR035901GIY-YIG endonuclease superfamilyGENE3D3.40.1440.10coord: 124..170
e-value: 1.3E-9
score: 40.2
IPR035901GIY-YIG endonuclease superfamilySUPERFAMILY82771GIY-YIG endonucleasecoord: 137..168
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..23
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..170
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
IPR000305GIY-YIG endonucleasePROSITEPS50164GIY_YIGcoord: 136..170
score: 11.755

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5002contigH-paniculata_contig5002:13438..13947 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5002.12238.1mRNA_H-paniculata_contig5002.12238.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5002 13271..13947 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5002.12238.1 ID=prot_H-paniculata_contig5002.12238.1|Name=mRNA_H-paniculata_contig5002.12238.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=170bp
MRSTLDASELVILLMSQVSQVRALTLFLRPPLVPRSLLRVSLPQRHGIST
TTATRAGFLNCCALRGTMAVGEASHLLSSVGLEEEGLSEAAAPGSEIDEQ
SARRHVHRTGSVADAARADPLRPRPLLRQCLNDVPDEPGVYVMESVEGCK
LYIGKSVKLSARVPSYFSYA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR035901GIY-YIG_endonuc_sf
IPR000305GIY-YIG_endonuc