mRNA_H-paniculata_contig50.12227.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig50.12227.1
Unique NamemRNA_H-paniculata_contig50.12227.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig50.12227.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 6.290e-29
Identity = 68/155 (43.87%), Postives = 100/155 (64.52%), Query Frame = 2 
Query:   32 PGAETPLSLLRAVKLNHVLPALLLCSDG*LSRRDRFLAVKRGDISVVLPWLMACTEAAAAHHRSTAGSTSTADRYKKVVAAFRHKRGISDAARALLSDEVAPANDNNFGKVSAKFGQEDAPALVAAKAAAIAASRDSLAAGGDAAWKPDDEYNPE 496
            P + TPLSLLRA+KL ++LPALL   DG ++R++R+ A+KRGDIS  LPWLM   +AA++  R      +  D++K+   A RH  G+ DAARALL++  +P ND  + ++ AKF  ED+ A+  A A AIA S      G    W+P++E++P+
Sbjct:  387 PRSGTPLSLLRAIKLWYLLPALLHSFDGRITRKERYKALKRGDISSTLPWLMEYAKAASSRSRGPVQEETQEDKFKRAEQACRHSGGVKDAARALLAEPRSPGNDETWERLKAKFPLEDSAAVEQAVADAIAESITEEENGSAPRWRPEEEFDPQ 541
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BLAST of mRNA_H-paniculata_contig50.12227.1 vs. uniprot
Match: A0A6P0N5L4_9CYAN (Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0N5L4_9CYAN)

HSP 1 Score: 90.1 bits (222), Expect = 3.890e-16
Identity = 47/108 (43.52%), Postives = 62/108 (57.41%), Query Frame = 3 
Query:  633 FGEFSLQSNLTVLREKCRPICVGSTMRRTLVAGVVRQYRPKLEEVNLSERQYGVAASGGAELMGLRAKAHHQLRHLLIALDCANAFNSVKRAAILEEVAIRTPGLTPF 956
            F +    +NL+ + +KCRPI VG   RR +   + RQY P L E    + QYGVA  GG EL+  RA   HQ    L+A D  NAFNS+KR+AIL  +A   P + P+
Sbjct: 1215 FWQLHTSANLSAIGDKCRPIAVGDLFRRIVGGVICRQYGPSLAEHFEPQGQYGVAVPGGTELLAARAFLAHQKGQCLLAYDARNAFNSMKRSAILPALADLIPPMLPY 1322
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BLAST of mRNA_H-paniculata_contig50.12227.1 vs. uniprot
Match: A0A1S4EQP4_DIACI (uncharacterized protein LOC108254043 n=1 Tax=Diaphorina citri TaxID=121845 RepID=A0A1S4EQP4_DIACI)

HSP 1 Score: 63.2 bits (152), Expect = 8.780e-8
Identity = 40/116 (34.48%), Postives = 61/116 (52.59%), Query Frame = 3 
Query:  633 FGEFSLQSNLTVLREK---CRPICVGSTMRRTLVAGVVRQYRPKLEEVNLSERQYGVAASGGAELMGLRAKA----HHQLRHLLIALDCANAFNSVKRAAILEEVAIRTPGLTPFV 959
            F E+   +NL  L +K    RPI +GS +RR LVA +   +   +    L   Q+G  A  G E +    +     H Q   +L+ +D  NAFNSV+R +IL +V ++TP + PF+
Sbjct:   10 FTEYLYGANLCALNKKGGGVRPIAIGSCLRR-LVAKIACNFERDVISDYLQPHQFGFGAKQGLEAVIHAVRTFVTHHKQSNFILVKIDYKNAFNSVERDSILNQVKLKTPEIFPFL 124
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BLAST of mRNA_H-paniculata_contig50.12227.1 vs. uniprot
Match: A0A699HZ53_TANCI (Putative reverse transcriptase domain-containing protein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699HZ53_TANCI)

HSP 1 Score: 62.0 bits (149), Expect = 6.050e-7
Identity = 44/131 (33.59%), Postives = 69/131 (52.67%), Query Frame = 3 
Query:  591 GRHSMEQPNAFSPEFGEFSLQSNLTVLRE---KCRPICVGSTMRRTLVAGVVRQYRPKLEEVNLSERQYGVAASGGAELM-----GLRAKAHHQLRHLLIALDCANAFNSVKRAAILEEVAIRTPGLTPFV 959
            GR  +       P   EF   + LT L +   + RPI VG+  RR LV+ V  +   K     LS+ Q+GV  SGGAE +      + ++ H+     ++ +DC+NAFN V R+A+L EV+ + P ++ +V
Sbjct:  198 GRDGLRLAGRCPPILAEFVASAPLTALLKPDNEIRPIAVGTIWRR-LVSKVAMKGMGKEMLKYLSDFQFGVGVSGGAEAILHSVNRVLSEYHNDGSLAMLIVDCSNAFNLVDRSALLHEVSAKCPSISLWV 327
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BLAST of mRNA_H-paniculata_contig50.12227.1 vs. uniprot
Match: A0A836CHA2_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHA2_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 7.410e-5
Identity = 49/134 (36.57%), Postives = 66/134 (49.25%), Query Frame = 2 
Query:   56 LLRAVKLNHVLPALLLCSDG*--LSRRDRFLAVKRGDISVVLPWLMACTEAAAAHHRSTAGSTSTADRYKKVVAAFRHKRGISDAARALLSDEVAPANDNNFGKVSAKFGQEDAPALVAAKAAAIAASRDSLAA 451
            L RA  L H++PAL+  +DG   + R DR   V RGD++ V+P L+A   A A   R T          + VV     + G+  AAR+L    VA AND  F  + AK     AP   AA+ A +AA   + AA
Sbjct: 2333 LQRATVLQHLMPALITSTDGAPGIKRADRISMVARGDLTRVMPALLA--HARARRRRRTREQVEAVIN-EYVVQCMGTRGGLKQAARSLQPAAVAEANDECFAAMEAKHPAA-APGEAAAELANMAAQVAATAA 2462
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig50.12227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JH58_9PHAE6.290e-2943.87Reverse transcriptase domain-containing protein n=... [more]
A0A6P0N5L4_9CYAN3.890e-1643.52Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 Ta... [more]
A0A1S4EQP4_DIACI8.780e-834.48uncharacterized protein LOC108254043 n=1 Tax=Diaph... [more]
A0A699HZ53_TANCI6.050e-733.59Putative reverse transcriptase domain-containing p... [more]
A0A836CHA2_9STRA7.410e-536.57Reverse transcriptase domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig50contigH-paniculata_contig50:56297..57267 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size971
Cds size369
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930472.2162502-UTR-H-paniculata_contig50:56296..568981622930472.2162502-UTR-H-paniculata_contig50:56296..56898Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig50 56297..56898 +
1691481306.949554-UTR-H-paniculata_contig50:56296..568981691481306.949554-UTR-H-paniculata_contig50:56296..56898Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig50 56297..56898 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930472.2370863-CDS-H-paniculata_contig50:56898..572671622930472.2370863-CDS-H-paniculata_contig50:56898..57267Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50 56899..57267 +
1691481306.9639146-CDS-H-paniculata_contig50:56898..572671691481306.9639146-CDS-H-paniculata_contig50:56898..57267Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50 56899..57267 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig50.12227.1prot_H-paniculata_contig50.12227.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig50 56899..57267 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig50.12227.1

>prot_H-paniculata_contig50.12227.1 ID=prot_H-paniculata_contig50.12227.1|Name=mRNA_H-paniculata_contig50.12227.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=123bp
MEQPNAFSPEFGEFSLQSNLTVLREKCRPICVGSTMRRTLVAGVVRQYRP
KLEEVNLSERQYGVAASGGAELMGLRAKAHHQLRHLLIALDCANAFNSVK
RAAILEEVAIRTPGLTPFVAKC*
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mRNA from alignment at H-paniculata_contig50:56297..57267+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig50.12227.1 ID=mRNA_H-paniculata_contig50.12227.1|Name=mRNA_H-paniculata_contig50.12227.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=971bp|location=Sequence derived from alignment at H-paniculata_contig50:56297..57267+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCCAACCACGAAGTGAACCCGCACCGGACGCCTGGAGCGGAGACGCCGC
TATCGTTGCTGCGGGCAGTGAAGCTCAACCACGTTCTCCCGGCGCTGCTT
CTATGTAGTGACGGATAACTCTCCAGGAGGGACAGGTTCCTCGCAGTGAA
GAGAGGGGACATCAGCGTCGTGCTTCCGTGGCTCATGGCGTGCACGGAGG
CCGCGGCAGCCCACCACCGGTCGACGGCGGGGAGCACGTCTACGGCGGAC
CGATACAAGAAGGTGGTAGCTGCGTTCAGGCACAAAAGAGGGATCTCTGA
CGCGGCGAGAGCATTGTTGTCCGATGAAGTCGCGCCTGCCAACGATAATA
ACTTTGGCAAAGTCAGCGCGAAATTCGGCCAGGAGGATGCACCCGCGCTG
GTAGCGGCGAAAGCAGCGGCCATAGCGGCAAGCCGTGATTCGCTCGCCGC
GGGCGGAGATGCCGCCTGGAAGCCAGACGACGAGTATAACCCCGAATACT
GATAGCGGTTGTGAAGTGGAAGAACGCCCTGTCCGCGGCGGGTAACGATG
GCCTACGTCTCTCTCACCTGCAGTGCATCCTGAACACCTCGGGCGGCACT
CCATGGAACAACCCAACGCCTTCTCGCCTGAGTTCGGGGAGTTTTCCCTT
CAAAGCAACCTCACGGTGCTCAGGGAGAAGTGTCGCCCGATCTGCGTGGG
ATCTACGATGCGGCGTACTTTGGTCGCTGGGGTGGTCAGGCAGTACAGGC
CGAAACTGGAAGAGGTCAATTTGTCGGAGCGGCAATACGGGGTAGCGGCT
TCGGGTGGCGCGGAGCTTATGGGCCTCCGCGCGAAAGCACACCACCAGCT
GAGGCATTTGCTTATCGCCCTCGACTGTGCCAACGCATTCAACTCCGTCA
AGCGGGCGGCGATCTTGGAAGAAGTGGCAATCCGCACCCCAGGACTGACT
CCTTTCGTAGCCAAATGCTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig50:56297..57267+

>mRNA_H-paniculata_contig50.12227.1 ID=mRNA_H-paniculata_contig50.12227.1|Name=mRNA_H-paniculata_contig50.12227.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at H-paniculata_contig50:56297..57267+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAACAACCCAACGCCTTCTCGCCTGAGTTCGGGGAGTTTTCCCTTCA
AAGCAACCTCACGGTGCTCAGGGAGAAGTGTCGCCCGATCTGCGTGGGAT
CTACGATGCGGCGTACTTTGGTCGCTGGGGTGGTCAGGCAGTACAGGCCG
AAACTGGAAGAGGTCAATTTGTCGGAGCGGCAATACGGGGTAGCGGCTTC
GGGTGGCGCGGAGCTTATGGGCCTCCGCGCGAAAGCACACCACCAGCTGA
GGCATTTGCTTATCGCCCTCGACTGTGCCAACGCATTCAACTCCGTCAAG
CGGGCGGCGATCTTGGAAGAAGTGGCAATCCGCACCCCAGGACTGACTCC
TTTCGTAGCCAAATGCTAAATGGAACAACCCAACGCCTTCTCGCCTGAGT
TCGGGGAGTTTTCCCTTCAAAGCAACCTCACGGTGCTCAGGGAGAAGTGT
CGCCCGATCTGCGTGGGATCTACGATGCGGCGTACTTTGGTCGCTGGGGT
GGTCAGGCAGTACAGGCCGAAACTGGAAGAGGTCAATTTGTCGGAGCGGC
AATACGGGGTAGCGGCTTCGGGTGGCGCGGAGCTTATGGGCCTCCGCGCG
AAAGCACACCACCAGCTGAGGCATTTGCTTATCGCCCTCGACTGTGCCAA
CGCATTCAACTCCGTCAAGCGGGCGGCGATCTTGGAAGAAGTGGCAATCC
GCACCCCAGGACTGACTCCTTTCGTAGCCAAATGCTAA
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