mRNA_H-paniculata_contig5.12219.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5.12219.1
Unique NamemRNA_H-paniculata_contig5.12219.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig5.12219.1 vs. uniprot
Match: A0A6H5K1Y5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K1Y5_9PHAE)

HSP 1 Score: 340 bits (873), Expect = 7.480e-106
Identity = 209/500 (41.80%), Postives = 295/500 (59.00%), Query Frame = 1 
Query:  238 VGGKRGSFGLLRRAFQEVKRVGAAIDPNAMAEVEKAWSDLTPEIRKAAGELAQAKDQIAGLKKEVGDAWSAARRTGRGS---ETRVXXXXXXXXXXXXXXXXXMAMFDVGQLAKDAAVAAKGIVGDVLXXXXXXXXXXXEDTLDFALSEGNLREASKAWRNLLETPGVMLIARDRSMWAGAEKAMQRHLQSYMSKKSMMKAEKLMNATANYALHFAGLGRNAAKSDYEIFQELSSKMCHLQGAAEKLWPMTSRALPFLGYNDYISSMEKALRAHVVSRLTLTVTAGALLGLNPRNDPFLMTLIAAFSLGHLTKDVAVNLAIFFQKAVVET----SPSFHQRPAGSDQP--ISALDLIGELVSGTATCQEMGHRAFQFFEVMKRAV-----SSVPESA---------ASKAHTVLLTS----DVLATRVVARPAGELRMDGRMLGLTLWIASTVDRFPYDPRLL---LLVFCSVLFCLVWGW-WKLYRWSYGRRQVRRSAK 1644
             GG+RG  GLL RAFQ+ KR+G  ++P+A+A  E+AW +L P++R+AA +                D W        G    ET                           L KD   AA+G+ GDV            E  L  ALSEGN+R AS+ WR LL+TPGV L+A+DR +WAGAEKA++R+L  ++S+KS  +A++ +NATA++ALHFAGL RNAAKSD+E+F+ELS K+CHLQGAAEKLWP+   ALP LGY DY   +E A+R++ +SR+T TV+A  LLGLNPR DPFL+TLIA+FSLGHL+KDVA N+A FFQK +V+      P   Q  + ++    +S +DL  ELV+GT TCQE+GH+AF FF+V++RA+     S V ES          +++A T L         L  R   R   +L+++G +L   +W+A+ +D   +   +L   L+V C ++F  +W   W+  R   GR ++ +  +
Sbjct:   10 AGGRRG--GLLGRAFQQAKRIGEIVNPDAVANAEQAWKELAPDLRQAADDXXXXXXXXXXXXXXARDIWXXXXXXXSGFGAVETDRTAADSSATFAQEREEGGSVTVGWEGLKKDIERAAQGVFGDVFGEAADEVLASFETRLSEALSEGNVRAASQLWRRLLDTPGVQLLAQDRRLWAGAEKAVRRYLSGFLSEKSAKEAQRAVNATADFALHFAGLSRNAAKSDHEVFEELSHKLCHLQGAAEKLWPLAVLALPLLGYQDYAKKLESAIRSNALSRVTQTVSATVLLGLNPR-DPFLLTLIASFSLGHLSKDVAQNMAAFFQKVLVDQVRFDQPQTKQSLSDAEGAPLLSPVDLATELVTGTKTCQELGHQAFAFFKVVQRALEGSSPSFVVESVDVNDNGVHPSTEASTALQEGRPPPQPLQQRGPRRTPRKLKLEGIVLRQAIWVAAVIDSKYFSLEVLVVCLVVGCVLVFGSIWVCCWRGLRDKRGRPRMIKKGR 506
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5.12219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K1Y5_9PHAE7.480e-10641.80Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5contigH-paniculata_contig5:51024..57843 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_000280.1
Exons9
Model size2026
Cds size1536
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930470.5881402-UTR-H-paniculata_contig5:51023..513901622930470.5881402-UTR-H-paniculata_contig5:51023..51390Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5 51024..51390 -
1691481306.0822213-UTR-H-paniculata_contig5:51023..513901691481306.0822213-UTR-H-paniculata_contig5:51023..51390Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5 51024..51390 -
1622930470.733938-UTR-H-paniculata_contig5:57720..578431622930470.733938-UTR-H-paniculata_contig5:57720..57843Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5 57721..57843 -
1691481306.1758428-UTR-H-paniculata_contig5:57720..578431691481306.1758428-UTR-H-paniculata_contig5:57720..57843Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5 57721..57843 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930470.6006618-CDS-H-paniculata_contig5:51390..517021622930470.6006618-CDS-H-paniculata_contig5:51390..51702Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5 51391..51702 -
1691481306.0918462-CDS-H-paniculata_contig5:51390..517021691481306.0918462-CDS-H-paniculata_contig5:51390..51702Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5 51391..51702 -
1622930470.6152167-CDS-H-paniculata_contig5:52335..525151622930470.6152167-CDS-H-paniculata_contig5:52335..52515Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5 52336..52515 -
1691481306.099824-CDS-H-paniculata_contig5:52335..525151691481306.099824-CDS-H-paniculata_contig5:52335..52515Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5 52336..52515 -
1622930470.627965-CDS-H-paniculata_contig5:53161..532671622930470.627965-CDS-H-paniculata_contig5:53161..53267Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5 53162..53267 -
1691481306.1085746-CDS-H-paniculata_contig5:53161..532671691481306.1085746-CDS-H-paniculata_contig5:53161..53267Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5 53162..53267 -
1622930470.6398282-CDS-H-paniculata_contig5:54008..541181622930470.6398282-CDS-H-paniculata_contig5:54008..54118Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5 54009..54118 -
1691481306.1210933-CDS-H-paniculata_contig5:54008..541181691481306.1210933-CDS-H-paniculata_contig5:54008..54118Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5 54009..54118 -
1622930470.6522222-CDS-H-paniculata_contig5:54425..545011622930470.6522222-CDS-H-paniculata_contig5:54425..54501Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5 54426..54501 -
1691481306.1314027-CDS-H-paniculata_contig5:54425..545011691481306.1314027-CDS-H-paniculata_contig5:54425..54501Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5 54426..54501 -
1622930470.6714323-CDS-H-paniculata_contig5:54834..551031622930470.6714323-CDS-H-paniculata_contig5:54834..55103Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5 54835..55103 -
1691481306.1393754-CDS-H-paniculata_contig5:54834..551031691481306.1393754-CDS-H-paniculata_contig5:54834..55103Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5 54835..55103 -
1622930470.6847541-CDS-H-paniculata_contig5:55826..560811622930470.6847541-CDS-H-paniculata_contig5:55826..56081Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5 55827..56081 -
1691481306.147639-CDS-H-paniculata_contig5:55826..560811691481306.147639-CDS-H-paniculata_contig5:55826..56081Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5 55827..56081 -
1622930470.7024066-CDS-H-paniculata_contig5:56909..570411622930470.7024066-CDS-H-paniculata_contig5:56909..57041Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5 56910..57041 -
1691481306.156356-CDS-H-paniculata_contig5:56909..570411691481306.156356-CDS-H-paniculata_contig5:56909..57041Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5 56910..57041 -
1622930470.7195568-CDS-H-paniculata_contig5:57624..577201622930470.7195568-CDS-H-paniculata_contig5:57624..57720Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5 57625..57720 -
1691481306.165364-CDS-H-paniculata_contig5:57624..577201691481306.165364-CDS-H-paniculata_contig5:57624..57720Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5 57625..57720 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5.12219.1prot_H-paniculata_contig5.12219.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5 51391..57720 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5.12219.1

>prot_H-paniculata_contig5.12219.1 ID=prot_H-paniculata_contig5.12219.1|Name=mRNA_H-paniculata_contig5.12219.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=512bp
MKTRKGSIFLVILLACGDAVPRVAAEQGGEDERSPKGDVGGKRGSFGLLR
RAFQEVKRVGAAIDPNAMAEVEKAWSDLTPEIRKAAGELAQAKDQIAGLK
KEVGDAWSAARRTGRGSETRVGEGDLEGGGEGGLEEGGMAMFDVGQLAKD
AAVAAKGIVGDVLGDVTSEIASSLEDTLDFALSEGNLREASKAWRNLLET
PGVMLIARDRSMWAGAEKAMQRHLQSYMSKKSMMKAEKLMNATANYALHF
AGLGRNAAKSDYEIFQELSSKMCHLQGAAEKLWPMTSRALPFLGYNDYIS
SMEKALRAHVVSRLTLTVTAGALLGLNPRNDPFLMTLIAAFSLGHLTKDV
AVNLAIFFQKAVVETSPSFHQRPAGSDQPISALDLIGELVSGTATCQEMG
HRAFQFFEVMKRAVSSVPESAASKAHTVLLTSDVLATRVVARPAGELRMD
GRMLGLTLWIASTVDRFPYDPRLLLLVFCSVLFCLVWGWWKLYRWSYGRR
QVRRSAKIKVL*
back to top

mRNA from alignment at H-paniculata_contig5:51024..57843-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5.12219.1 ID=mRNA_H-paniculata_contig5.12219.1|Name=mRNA_H-paniculata_contig5.12219.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6820bp|location=Sequence derived from alignment at H-paniculata_contig5:51024..57843- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAATATGAGGAAGAAAAATGACAGGTAGGAGATGATGGAAAATGGAAAG
CTGTGCATGAGGCGGCATCAGGTATCACGTCTCTCAAGTGCTGGTATCCG
AAAAATTATACGGGTAGGTGCCCATGAAGACAAGAAAAGGATCAATATTT
TTGGTCATTCTATTGGCTTGTGGAGATGCGGTGCCAAGAGTGGCGGCGGA
GCAAGGCGGAGAGGACGAGGTACCTGGAGCTAAATATGTATGACCCATTT
TCAAACTTTCAAATCGAAATACAAATACCCTTTTACTTTGTGTCACGTGG
TTGGCCTCGAAAGTACAGTACAGTAGTGCAGTGCGTCAGAGTTGAGTTGA
GTATCGAGGGCAGTGGGGGGGGTTGATGTTTCCGTGTGCCAGCGACGATG
CAGTTCCAATCTTTCTTCTTCGACATATTGAGAGATGCGGAGAAATACAT
CCAAACGGCCCAAACCTGCGCCGTGTGGGATGACCTGAATTTTCAACACA
AATGGACACAACATGTGTATCCACGTGTCTGCGGCTCATCGAAGGAGTCC
AGCACTAACGGCTTGACGCCAAAGGACACCAAGCTACCAAGCCACGGCAC
TTGCTACGATAGCTACTGTGGTGTCATATACATAAAACTGCAGCTTCTCG
ACTGCAGGTAGTTTGGGTCCGAAAACCACCAGACGACACTCTGAAGCGGT
TTCCTGGACCAGGTGCATGGTCCATGAGCAGATATCTTTGTTGCCCAATC
CTGTGTTGAGCCAATCGATCACCATCGCGACGCTCTTTGTCTCTTTGTGT
AGCGCTCGCCGAAGGGAGATGTTGGCGGGAAAAGGGGCTCTTTTGGCCTT
CTGCGGCGAGCGTTTCAGGAAGTGAAGCGCGTAGGCGCAGCTATTGACCC
GAACGCCATGGCGGAAGTGGAGAAGGCGTGGAGCGTGAGTGCGGTCAAGG
GTTATGTCAAATTCTCATGTTTTTCACTGCATACCTGTGCTGGTACCGTC
TCGCAGTTCTGCAGGTAGATTCACCTCGGCTGATTCGTGGCTGATTCGGG
GTTCTGACCGCTACCTTTGGCTTCAATAACATTAGGCGTAGCGTCGTGAT
ATCTTTCGTGACCTGTGACCACATGTTGCTCTACAAACCATAGGTGGATA
CTTAATATATGTTGAGAAATCTCATTGCTATGGTTGCCTCGTGCGGAAGC
CTCACACATTTATGCAATGCTTAACCTGTCGTTGCATCTACCTGCCGCCG
GCTTCATAAACTCTGCGGCGGTTGAGGACGTTTTAAGTATTGATTCTTTT
TTTTTTTCCTCCGGGTTTTTTTCCTCCTTGAGCTTTTTAAAATTTCAGAA
CGAAAAGCGTATATATTTGCCTACAAACAGTATTCCTTGATCCTATTTCG
AGTTGTTTCTAGTCGATTCTTTTTGACATTGTAAGAGTGTTCTTGGGGGA
TGGGAAAGCAAGAGGAAGGAATGTACAGAAAAAGAGTGAATAATCGCGCA
CATTTAGAAAGTCCCTTAGTAGCTGAGAGCTTTGTAAGCTCCCGCTTTCC
CACGTCGCCTTTTGGATCCCCGCAATAGCATCTACCACTTTCACAGAAGA
ACTGCAAGCTACGATAGACAGCAGGTGTATTTTCTGTTCCGTGCCCGTAC
CCCATCTATGCCAACCCTTCGTGGTCAACTTTACGTACGTCCTGTACTCC
GCCCCTCCTTCGTTGCTATCATGCCATAATTGTACATCTCTGAATACATA
CCGGATTTCCAGGATCTGACGCCAGAGATACGAAAAGCAGCGGGTGAGCT
AGCTCAAGCGAAAGATCAAATTGCAGGTTTGAAGAAAGAAGTTGGAGATG
CCTGGTCGGCTGCTCGGCGCACAGGGCGTGGCAGTGAAACAAGAGTCGGA
GAAGGTGACCTTGAAGGGGGTGGAGAAGGTGGCCTTGAAGAGGGTGGTAT
GGCCATGTTTGATGTCGGCCAGCTAGCGAAGGATGCGGCAGTGGCGGCCA
AAGGGATTGTTGGTGACGTGAGTTGTTCGAGGGTTCTACGTAGACCCAAC
CTCAGTCATTGATACCTCTGCGGATGAGAAACACGCTGAGAGTACGCAAA
GGAAAGATGTATGGTATGTTGAAATAAAGAGCCAGCTACGAGGTCAGTTT
TGCCATGTATCAACTTCGTATTAGGTCATGAGGTGATATAGTTATGATGT
CGTCAAATCGAATGTCGATGACTTTCTCGTGATATAGTGGTTTGTCACAT
CATACAGATAGTTAGTAGCATGCGATATTTGATACCAATCAGTGTAAATT
GTGAAGAAAACGTCGTGTGATCGGGGATGAACCTGTACCCATGGTCTGTG
ATTACGCTCTAACGGATACATACACACACCTATATTGAAAATCAGATCAT
ATCAAACATCAAGTGATATACACTGTAATGTGATATTCCAATACACCTTA
TTAGTATCACATATATTCCGTGCCAAATGTCAGATATCATATCGAACAGA
TTTCGAACTTGATACTGACCACTATATAGGTATATGATTACCACCCCCCC
CCGCGCACGCGCCAATGAACAGACCCCCCACTGATTTTGTCGGAATAATT
TCATCACAGTAGTATTGAAAATAACTGAGCATACCCCTAATTTGCATGGT
TCCGGGCGTATCTTCTACTTGTTCCATTTTCAGACGGTGTTCCCATCGCC
CCCTCCCCTCTGTCAATCCCTGAACTCCGTATCCGGGTAGGTTTTAGGTG
ATGTCACCTCTGAAATAGCTTCCTCGCTCGAGGACACCCTGGATTTTGCT
CTGTCCGAGGGAAATCTGAGAGAAGCATCGAAGGCTTGGCGAAATCTTTT
AGAAACCCCTGGGGTAATGCTTATAGCTCGAGATCGGAGTATGTGGGCGG
GCGCGGAGAAGGCTATGCAGCGGCACCTTCAGAGTTACATGAGCAAAAAG
AGCATGATGAAGGCGGAGAAATTGATGAATGCTACCGCGAACTATGCTCT
TCATTTCGCGTAAGTGGGCCGGGTATGTTCATAGCTATGCTATCATTTTG
TTTAGATTATTTTTGTTTCAGTCTGTTGGCGTTCGTTTGGGATAGCCTTT
TTAACTACTGCAAAAACGACTCGTAGTTTGTAATGTCTTTCGCTCGACTT
GTTCTGGGATATCTACTTCTGTAGAATAGACCCGACGTCGTTTATTCACG
GTCCAGATACACGGCATGAGATATATCGCCAAGACCCGACAAATGCTGCG
CTCTGTCTCTCCTTTGAGGCACATCGATAAAAAATTAACTTTGGGATCGT
TTTGCGCGGTCAAACTCTTTTTGTTATTGTTGTTGATTGCAGCGGGCTAG
GCCGAAACGCCGCAAAAAGCGACTACGAGATATTCCAAGAGTTGTCCTCC
AAGATGTGTCACCTACAGGTGAATCTAAATATGTGGAAAGCCTTGCGAGA
GGACGGGCGGGGGTGGCGGGGGTAACTGTGTCAATATACAGGATTCAGAA
ATATATATGTTCAGCCGTTTCAACTTCGTTTTTGGCATCTTGACGTTGGA
TTTGTTTTCGTACCTCGTGCCGGGGCTGTGTGATTTCTCAAACACGCCGA
GGGGGCGGGGGAGGGAGGGGTGGCTAATACTCCCACCTCTGTTAAACATG
CATGCTCACTACAAACCCTACAGTTGTTTTCGTATGTTCATCATCTGCCT
TCTGCGTGTGCCTGAAATCAACTAGGGTGCGGCGGAAAAATTGTGGCCGA
TGACATCACGCGCGCTACCGTTTCTGGGATACAATGATTATATTTCGAGC
ATGGAGAAGGCGCTCAGAGCACACGTTGTGTCCAGGTAACATAGCGCACT
ACTGCAACACAAAGAAACCGTGCCACAGTGTACCATGTTGTTTTGCATGG
ACTACTCGCCATTTATGTTTCGAAGGGAAGAGACCAACGAAGCTACATTC
TGCACTGAGGTTCATTACTAGAGAGCAGCTTTTGGGTGGAACATATGAAG
TCTGGATTTATGGGAATCTGAGGTGGAATGTTAACCCTTTCAGCGCGACT
TATTCATGATCCTGTGGTCCTTATCCATGGTTAAAAGATTTACATATATA
TGTATATGCTTGGTTCTTGGTTATCATGATAGACACGATAGCTCCAGCAG
TAAAGAATTCGCGCTGAAGTGGTTGAATGAACCGAAATTCCCCGAACTGA
AATTCAAAGTTGAAGACGGGGTCGACCGGAAAGGATTTGGATCGTATCAA
CAAATTCGAACCGATGAAATATGGGAATTCTCGCTCTTACAACGTTTCAC
CCCAACTCCCCAGATTTGCAGACTTTTCAATTTCCGCCCGAGAGGATCTC
GCCAAGATAGTAATTGCGCTAACTGCAAGTGTTTGTGGTACTAATGGGTA
TCGTCCCTGAAGCTTGTGTTTTTTGTGTCTTGTGAGCGACGAAAATACGT
ACAAACATTTCCACTGCTATGCATGCTTTCCAACGAGATTGCACGTCATA
GTGTTAGACCCTGAACGGAACGGCGGTGTTAATTGGTTTTACCCGTTGTT
GTTTCCCATCATACGCGGATGTGCAGGTTGACGCTGACCGTTACGGCAGG
TGCCTTGTTAGGGTTGAACCCTCGCAATGACCCCTTCCTCATGACGCTGA
TTGCTGCATTTTCTCTGGGACACCTCACCAAGGCAAGCCAATCCGATTTT
TTTTGTGTGTTTGCCGCAACGAAGATAGCTTTAGAGATTCAGCTCTTGGA
GAACTTACTATTCGAATTCAGTTGTAATCTTGCATACAACCGGTCCCTCA
TTTGACATTTTATTGCTCGTTCTTTAGGAACTTATATACGGGGGGCCTCT
TGTTCACACTGCGTTACTGTTTATCATCCCATACGTAGCATGGTCGTGCG
CAATGGCGTCGAGTGATATACTTACGATTAATTACTACACAAGGCGAAAT
CTATGAAACCGCCGGTTGGCTGACTGAAGCTACGTTCGAAATCACCGTGC
TGCGGCAACGAGACGCAATACAAACATTCGCCGACGTGCTAGTGTCTATA
ATTTTATCGAAGTTCCGATTACGTTACCTTTCTGTCGTCGCTTCTTTACG
CAAGTAGTACTGATGTGTCATTATTTCTTAACACGCTATCGTGGTGGTCG
TAGTGGTTACGAGGAAATCTGGGCTTGGTACGCCACAGGCCTGCCGGCCG
GTGGCCAGGGCGTCTGAGCCCACTAGTCGGTTGTTCCACTTGCCCTACAA
CTAGTAGTGCAAACTAATTACATTTTGCTCCTCCTCTTACCCCCTGGGCT
CTGCGTACGGCCCCAATCAAATCGGCAGGATGTCGCAGTTAACCTAGCAA
TTTTTTTTCAGAAGGCAGTGGTGGAGACGTCACCTTCTTTTCATCAGCGA
CCGGCAGGGTCAGATCAGCCAATCAGCGCGTTAGACCTTATCGGAGAACT
TGTCAGCGGCACGGCCACTTGCCAGGAGATGGGACACCGGGCGTTCCAAT
TCTTCGAGGCGAGTCAACACATACCAGTATGAATGAAACGCTTTCGGCGC
GTCAGCCTTTTTTTATCGCTCGTGCTTCATGTTGACGTCACTACAGTAGT
CAAGAGGTAATCAAGAGGGTGTACCAATATGTCGAATTTCCTTAGACAAC
AGCCAAACGTGAGTGTGGGGGTAGAAGGCATATATACCATCATAAATTCT
CAAGAGGTTCGTTCTACATTTAAGAATTATAGAAGCGCGAGAGCGCAACA
AGTTATACACAAATACATGATACCTCACACAACATTTGTCGGCTAAGCCC
CCTTGCTCGATTTCGCTGTGTTTAGTGCGAAAAACGGTAGTTGCTCTTCT
GTGGACACCACGATTTGATTCGGGTGTCTGACAAGTCAGGAAGGACCGCC
TTAAATCCCGATCTGCGTTTCATCGGGCTGCAGTTTTAGGTAGGAATTAT
AAGGGCTCGCCAAGCCCGTTCGATCCTTCTCGCATACATAAGTTCCTATT
AAATATGATCGCCTTACGCTAAAAAACGAAGGAGTTGCCTGCTGTACGTC
CTCAAGGACGCTTCGCGTGACGGGCTCTCATTCAATCACACGCACATATC
TCCTCATAGCATATCCCGTGTCTGTCTTTTGAACTCCGAAGGTTATGAAG
CGAGCTGTATCAAGCGTCCCCGAGTCTGCTGCTTCCAAGGCGCACACGGT
GTTACTGACTAGCGATGTCCTGGCAACGCGAGTCGTTGCCCGCCCGGCAG
GAGAACTCAGAATGGACGGTCGCATGCTTGGGCTGACGCTCTGGATCGCC
TCTACTGTGGACCGGTTTCCCTATGATCCTCGGTTACTGCTGCTTGTATT
TTGTTCGGTTTTATTCTGCTTGGTATGGGGGTGGTGGAAGCTGTATAGAT
GGAGCTATGGTCGCCGACAAGTACGAAGGAGTGCGAAAATAAAAGTGTTG
TAGATTGGATTATGTGTGGTTTGGGTCGTGATCATTGTGATAATCGTTTT
CGTTTCGGAACAGTTTTTAATTTAATACTCAGTCGTCTTTTAAGATGACT
GTGCAAGAAATGTGCGTGGATAAACAAATTATGGACTGCACTGGCGTAGC
CGTAGTTCCCTGCTAGAATTACGTTAAGCTGCAGTGTATAGCCTATTCCG
CAACAGCGAAGATATGGTTTCAGTGTATGGGAAGTCCAGGAGCGAGCAAT
GTAACCTTCTGCTGACACTCTGATTTGGATGTGCGATAAACACTTGACTA
TACCACAAGAGAGAAGGTAGAAGTAGTATTGTCTGACTCGTGTAGCGTTC
CAGCTAACAATTAAGTGTAT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig5:51024..57843-

>mRNA_H-paniculata_contig5.12219.1 ID=mRNA_H-paniculata_contig5.12219.1|Name=mRNA_H-paniculata_contig5.12219.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3072bp|location=Sequence derived from alignment at H-paniculata_contig5:51024..57843- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGACAAGAAAAGGATCAATATTTTTGGTCATTCTATTGGCTTGTGG
AGATGCGGTGCCAAGAGTGGCGGCGGAGCAAGGCGGAGAGGACGAGATGA
AGACAAGAAAAGGATCAATATTTTTGGTCATTCTATTGGCTTGTGGAGAT
GCGGTGCCAAGAGTGGCGGCGGAGCAAGGCGGAGAGGACGAGCGCTCGCC
GAAGGGAGATGTTGGCGGGAAAAGGGGCTCTTTTGGCCTTCTGCGGCGAG
CGTTTCAGGAAGTGAAGCGCGTAGGCGCAGCTATTGACCCGAACGCCATG
GCGGAAGTGGAGAAGGCGTGGAGCCGCTCGCCGAAGGGAGATGTTGGCGG
GAAAAGGGGCTCTTTTGGCCTTCTGCGGCGAGCGTTTCAGGAAGTGAAGC
GCGTAGGCGCAGCTATTGACCCGAACGCCATGGCGGAAGTGGAGAAGGCG
TGGAGCGATCTGACGCCAGAGATACGAAAAGCAGCGGGTGAGCTAGCTCA
AGCGAAAGATCAAATTGCAGGTTTGAAGAAAGAAGTTGGAGATGCCTGGT
CGGCTGCTCGGCGCACAGGGCGTGGCAGTGAAACAAGAGTCGGAGAAGGT
GACCTTGAAGGGGGTGGAGAAGGTGGCCTTGAAGAGGGTGGTATGGCCAT
GTTTGATGTCGGCCAGCTAGCGAAGGATGCGGCAGTGGCGGCCAAAGGGA
TTGTTGGTGACGATCTGACGCCAGAGATACGAAAAGCAGCGGGTGAGCTA
GCTCAAGCGAAAGATCAAATTGCAGGTTTGAAGAAAGAAGTTGGAGATGC
CTGGTCGGCTGCTCGGCGCACAGGGCGTGGCAGTGAAACAAGAGTCGGAG
AAGGTGACCTTGAAGGGGGTGGAGAAGGTGGCCTTGAAGAGGGTGGTATG
GCCATGTTTGATGTCGGCCAGCTAGCGAAGGATGCGGCAGTGGCGGCCAA
AGGGATTGTTGGTGACGTTTTAGGTGATGTCACCTCTGAAATAGCTTCCT
CGCTCGAGGACACCCTGGATTTTGCTCTGTCCGAGGGAAATCTGAGAGAA
GCATCGAAGGCTTGGCGAAATCTTTTAGAAACCCCTGGGGTAATGCTTAT
AGCTCGAGATCGGAGTATGTGGGCGGGCGCGGAGAAGGCTATGCAGCGGC
ACCTTCAGAGTTACATGAGCAAAAAGAGCATGATGAAGGCGGAGAAATTG
ATGAATGCTACCGCGAACTATGCTCTTCATTTCGCGTTTTAGGTGATGTC
ACCTCTGAAATAGCTTCCTCGCTCGAGGACACCCTGGATTTTGCTCTGTC
CGAGGGAAATCTGAGAGAAGCATCGAAGGCTTGGCGAAATCTTTTAGAAA
CCCCTGGGGTAATGCTTATAGCTCGAGATCGGAGTATGTGGGCGGGCGCG
GAGAAGGCTATGCAGCGGCACCTTCAGAGTTACATGAGCAAAAAGAGCAT
GATGAAGGCGGAGAAATTGATGAATGCTACCGCGAACTATGCTCTTCATT
TCGCCGGGCTAGGCCGAAACGCCGCAAAAAGCGACTACGAGATATTCCAA
GAGTTGTCCTCCAAGATGTGTCACCTACAGCGGGCTAGGCCGAAACGCCG
CAAAAAGCGACTACGAGATATTCCAAGAGTTGTCCTCCAAGATGTGTCAC
CTACAGGGTGCGGCGGAAAAATTGTGGCCGATGACATCACGCGCGCTACC
GTTTCTGGGATACAATGATTATATTTCGAGCATGGAGAAGGCGCTCAGAG
CACACGTTGTGTCCAGGGTGCGGCGGAAAAATTGTGGCCGATGACATCAC
GCGCGCTACCGTTTCTGGGATACAATGATTATATTTCGAGCATGGAGAAG
GCGCTCAGAGCACACGTTGTGTCCAGGTTGACGCTGACCGTTACGGCAGG
TGCCTTGTTAGGGTTGAACCCTCGCAATGACCCCTTCCTCATGACGCTGA
TTGCTGCATTTTCTCTGGGACACCTCACCAAGGTTGACGCTGACCGTTAC
GGCAGGTGCCTTGTTAGGGTTGAACCCTCGCAATGACCCCTTCCTCATGA
CGCTGATTGCTGCATTTTCTCTGGGACACCTCACCAAGGATGTCGCAGTT
AACCTAGCAATTTTTTTTCAGAAGGCAGTGGTGGAGACGTCACCTTCTTT
TCATCAGCGACCGGCAGGGTCAGATCAGCCAATCAGCGCGTTAGACCTTA
TCGGAGAACTTGTCAGCGGCACGGCCACTTGCCAGGAGATGGGACACCGG
GCGTTCCAATTCTTCGAGGATGTCGCAGTTAACCTAGCAATTTTTTTTCA
GAAGGCAGTGGTGGAGACGTCACCTTCTTTTCATCAGCGACCGGCAGGGT
CAGATCAGCCAATCAGCGCGTTAGACCTTATCGGAGAACTTGTCAGCGGC
ACGGCCACTTGCCAGGAGATGGGACACCGGGCGTTCCAATTCTTCGAGGT
TATGAAGCGAGCTGTATCAAGCGTCCCCGAGTCTGCTGCTTCCAAGGCGC
ACACGGTGTTACTGACTAGCGATGTCCTGGCAACGCGAGTCGTTGCCCGC
CCGGCAGGAGAACTCAGAATGGACGGTCGCATGCTTGGGCTGACGCTCTG
GATCGCCTCTACTGTGGACCGGTTTCCCTATGATCCTCGGTTACTGCTGC
TTGTATTTTGTTCGGTTTTATTCTGCTTGGTATGGGGGTGGTGGAAGCTG
TATAGATGGAGCTATGGTCGCCGACAAGTACGAAGGAGTGCGAAAATAAA
AGTGTTGTAGGTTATGAAGCGAGCTGTATCAAGCGTCCCCGAGTCTGCTG
CTTCCAAGGCGCACACGGTGTTACTGACTAGCGATGTCCTGGCAACGCGA
GTCGTTGCCCGCCCGGCAGGAGAACTCAGAATGGACGGTCGCATGCTTGG
GCTGACGCTCTGGATCGCCTCTACTGTGGACCGGTTTCCCTATGATCCTC
GGTTACTGCTGCTTGTATTTTGTTCGGTTTTATTCTGCTTGGTATGGGGG
TGGTGGAAGCTGTATAGATGGAGCTATGGTCGCCGACAAGTACGAAGGAG
TGCGAAAATAAAAGTGTTGTAG
back to top