mRNA_H-paniculata_contig5.12218.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig5.12218.1 vs. uniprot
Match: D7FQR9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQR9_ECTSI) HSP 1 Score: 342 bits (876), Expect = 3.680e-108 Identity = 208/445 (46.74%), Postives = 265/445 (59.55%), Query Frame = 1
Query: 94 LLGCLSNAFVFPGTVFHQQPSRIGGRY--GGEQLKMSSSWSPEERLEIVRNLAEWQERD-STIALAGVKILAETSAPGVLARYYESLAAGSTEQIVLVAPSCSIEGGSTDVVERALSSACSSRVYHPESEAG-DRKAPHFALWHEA-PSDAFSPSSVLQEQTATMSEASVMEEVFLWLQRTLLGMVDEEEQVFVDLGRKLLTVHKYVVANATTEAELSRTFWAEAAELSRHGTIA------KDL---------------------------------MDEKASEEQEESG----------------------GVGGGNDPREDSVLLALPGFRFKDRMEFRDFVADKLAEPLKTLSPMGREGVALFAESYAGEDMKFPVILLFPFLQQFTTPEGGYKFINGRGEVQDADEYIRNSEEKLAQEAASKLQGELLI-NPFLGPFSLPP 1227
LL S+AFV P RY +S +W P E+ EI+ L +WQERD + A ++IL E+S VL RYYESLA G ++Q++LVAPSC IE G T +E ALSS+C S+VYHP+ E G KAPH ALWH+ ++ SPS+ L+++TA++S+ +VMEEVFLWLQRT+LGMVD+EE+ FV+LGRKLLTVH+YVV ATTE ELS+ FW EA L++HG A KD D+ +E E +G G+GGG+DPRE SVL+ALPGFRFKDR F +FV +KL PLKTLSP G EG L A YAGED+KFPV++L P L+ F PEGGYKFI RGE +DADEYIR E K+A++A + + + +P GP S PP
Sbjct: 18 LLASPSHAFVAPSPCSSSANRHERHRYRVSNANTALSMAWGPAEKAEILSGLIDWQERDVDGVGAADIQILTESSPTAVLTRYYESLAKGESQQMLLVAPSCVIESGCTTALEAALSSSCISKVYHPDVEQGLGGKAPHLALWHQGVAAEELSPSNDLEQKTASLSKKAVMEEVFLWLQRTMLGMVDDEEEDFVELGRKLLTVHRYVVVKATTEVELSQAFWQEATALAKHGVEAAAEKKKKDAEXXXXXXXXXXXXXXXXXXXXXXXXXEAERPENTDDAKTESLEVTGSTKEKEVDTEEKXXXEDVLKKSGLGGGDDPREASVLMALPGFRFKDRAVFGEFVREKLVAPLKTLSPFGEEGTELSAVIYAGEDLKFPVMILSPQLKTFEAPEGGYKFIY-RGEEKDADEYIRAEELKMAEKATERRETVAVEQDPLFGPRSPPP 461
BLAST of mRNA_H-paniculata_contig5.12218.1 vs. uniprot
Match: A0A6H5K0A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0A5_9PHAE) HSP 1 Score: 216 bits (549), Expect = 3.840e-61 Identity = 137/332 (41.27%), Postives = 177/332 (53.31%), Query Frame = 1
Query: 94 LLGCLSNAFVFPG--TVFHQQPSRIGGRYGGEQLKMSSSWSPEERLEIVRNLAEWQERD-STIALAGVKILAETSAPGVLARYYESLAAGSTEQIVLVAPSCSIEGGSTDVVERALSSACSSRVYHPESEAG-DRKAPHFALWHEAPSDAFSPSSVLQEQTATMSEASVMEEVFLWLQRTLLGMVDEEEQVFVDLGRKLLTVHKYVVANATTEAELSRTFWAEAAELSRHGTIA----------------------------------------------------------KDLMDEKASEEQEE---SGGVGGGNDPREDSVLLALPGFR 894
LL S AFV P + + R R +S +W P E+ EI+ L +WQERD + A ++IL E+S VL RYYESLA G +Q++LVAPSC+IE G T +E ALSS+C S+VYHP+ E G KAPH ALWH+ +S+ +VMEEVFLWLQRT+LGMVD+EE+ FV+LGR+LLTVH+YVV ATTE ELS+ FW EA L++HG A K +D + +E+E+ G+GGG+DPRE SVL+ALPGFR
Sbjct: 18 LLPSPSQAFVAPSPRSSSANRHERHRYRVSNANTALSMAWGPAEKAEILSGLIDWQERDVDGVGAADIQILTESSPTAVLTRYYESLAKGEAQQMLLVAPSCTIESGCTTALEAALSSSCISKVYHPDVEQGLGGKAPHLALWHQG-----------------VSKKAVMEEVFLWLQRTMLGMVDDEEEDFVELGRRLLTVHRYVVVKATTEVELSQAFWQEATALAKHGAEAAAEKKKKDAEXXXXXXXXXXXXXXXXVAAAEVDEEDAERPDNKDGAKTESLDVTGSTKKKEVDTEGKKEEEDVLKKSGLGGGDDPREASVLMALPGFR 332
BLAST of mRNA_H-paniculata_contig5.12218.1 vs. uniprot
Match: A0A6V2RZP2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2RZP2_HETAK) HSP 1 Score: 110 bits (276), Expect = 5.220e-23 Identity = 103/289 (35.64%), Postives = 140/289 (48.44%), Query Frame = 1
Query: 226 EIVRNLAEWQERDSTIALAGVKILAETSAPGVLARYYESLAAGSTEQIVLVAPSCSIEGGSTDV--VERALSSACSSR-VYHPESEAGDRKAPHFALWHEAPSDAFSPSSVLQEQTATMSEASVMEEVFLWLQRTLLGMVDEEEQVFVDLGRKLLTVHKYVVANATTEAELSRTFWAEAAELSRHGTIAKDLMDEKASEEQEESGGVGGGNDPREDSVLLALPGFRFKDRMEFRDFVADKLAEPLK--TLSPMGREGVALFAESYAGED-MKFPVILLFPFLQQFTTPE 1074
E V W E + A + V+ A+T A GV+A +Y S++ + E +V VAP G+ V VE AL A + R VYHPES ++PHFAL H A A + Q + VME++F W Q LL D EE+ F+DLGRK++T+ + VV A+TEA L WAEAA LSR G + A+EE E+SVL+ P F K F FV PL T MG L ++ ED ++ P++L+ P L + PE
Sbjct: 52 EAVSAFEAWYEGE---APSIVESTADTVA-GVVADFYGSVSTAAGETVV-VAPRVGAGWGAAQVYAVEGALRPAAAFRAVYHPESHDEGLRSPHFALHHHAGLAAAAEPPASQPLP---TREDVMEDIFTWFQNQLLRE-DLEEEEFIDLGRKMITIQEVVVCGASTEAGLLSACWAEAARLSRPGAAIQ------ANEE--------------ENSVLIVAP-FLGKGGGAFAGFVQKAFGGPLAQVTAQGMGASDGVLVCHAFPAEDGLRHPMVLVHPVLVELEAPE 310 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5.12218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5.12218.1 >prot_H-paniculata_contig5.12218.1 ID=prot_H-paniculata_contig5.12218.1|Name=mRNA_H-paniculata_contig5.12218.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=415bp MTNLHPWRYTLLHAVAFCLLGCLSNAFVFPGTVFHQQPSRIGGRYGGEQLback to top mRNA from alignment at H-paniculata_contig5:43564..50217- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5.12218.1 ID=mRNA_H-paniculata_contig5.12218.1|Name=mRNA_H-paniculata_contig5.12218.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6654bp|location=Sequence derived from alignment at H-paniculata_contig5:43564..50217- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5:43564..50217- >mRNA_H-paniculata_contig5.12218.1 ID=mRNA_H-paniculata_contig5.12218.1|Name=mRNA_H-paniculata_contig5.12218.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2490bp|location=Sequence derived from alignment at H-paniculata_contig5:43564..50217- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |