mRNA_H-paniculata_contig49903.12204.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig49903.12204.1
Unique NamemRNA_H-paniculata_contig49903.12204.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig49903.12204.1 vs. uniprot
Match: A0A811S116_9POAL (Hypothetical protein n=3 Tax=Andropogoneae TaxID=147429 RepID=A0A811S116_9POAL)

HSP 1 Score: 57.4 bits (137), Expect = 6.740e-8
Identity = 27/58 (46.55%), Postives = 38/58 (65.52%), Query Frame = 1
Query:   40 QLWKEMREDGLQPNVINYNLVVRALGRAGK-WDQAVALLDDMREKGVEPDHRTFNAAI 210
            +L+ E+R  G+ P ++ YN+V+   GR G+ W Q VALLD+MR  GVEPD  T +  I
Sbjct:   53 ELFAELRRQGVAPTLVTYNVVLDVYGRMGRSWPQIVALLDEMRAAGVEPDDFTASTVI 110          
BLAST of mRNA_H-paniculata_contig49903.12204.1 vs. uniprot
Match: UPI001900DC38 (pentatricopeptide repeat-containing protein At1g73710 n=1 Tax=Benincasa hispida TaxID=102211 RepID=UPI001900DC38)

HSP 1 Score: 56.6 bits (135), Expect = 1.280e-7
Identity = 27/57 (47.37%), Postives = 39/57 (68.42%), Query Frame = 1
Query:   46 WKEMREDGLQPNVINYNLVVRALGRAGKWDQAVALLDDMREKGVEPDHRTFNAAIEV 216
            W + R+D + PNVI+YN+V+RALGRA KWD+     ++M E GV P + T+   I+V
Sbjct:  152 WFKSRKDYV-PNVIHYNIVLRALGRAQKWDELRLCWNEMAENGVVPTNNTYGMLIDV 207          
BLAST of mRNA_H-paniculata_contig49903.12204.1 vs. uniprot
Match: PPR10_MAIZE (Pentatricopeptide repeat-containing protein 10, chloroplastic n=16 Tax=PACMAD clade TaxID=147370 RepID=PPR10_MAIZE)

HSP 1 Score: 55.5 bits (132), Expect = 3.240e-7
Identity = 26/58 (44.83%), Postives = 38/58 (65.52%), Query Frame = 1
Query:   40 QLWKEMREDGLQPNVINYNLVVRALGRAGK-WDQAVALLDDMREKGVEPDHRTFNAAI 210
            +L+ E+R  G+ P ++ YN+V+   GR G+ W + VALLD+MR  GVEPD  T +  I
Sbjct:  195 ELFAELRRQGVAPTLVTYNVVLDVYGRMGRSWPRIVALLDEMRAAGVEPDGFTASTVI 252          
BLAST of mRNA_H-paniculata_contig49903.12204.1 vs. uniprot
Match: A0A8K0K9Q1_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0K9Q1_LADFU)

HSP 1 Score: 54.7 bits (130), Expect = 5.640e-7
Identity = 22/54 (40.74%), Postives = 34/54 (62.96%), Query Frame = 1
Query:   37 TQLWKEMREDGLQPNVINYNLVVRALGRAGKWDQAVALLDDMREKGVEPDHRTF 198
            +QL + +   G +PN+INYN +++A GR G  + +  L+D M  KG+ PD  TF
Sbjct:   82 SQLMESLESSGYEPNIINYNAMIKAFGRCGDLEVSFRLVDQMISKGIAPDSSTF 135          
BLAST of mRNA_H-paniculata_contig49903.12204.1 vs. uniprot
Match: D8LCM4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCM4_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 6.040e-7
Identity = 23/51 (45.10%), Postives = 34/51 (66.67%), Query Frame = 1
Query:   58 REDGLQPNVINYNLVVRALGRAGKWDQAVALLDDMREKGVEPDHRTFNAAI 210
            R  G  P+V++Y+  + A  RAG W++A+ LLD MRE G+EP+  TF+  I
Sbjct:  558 RTGGPTPDVVSYSATITACSRAGNWERALGLLDQMREDGLEPNSTTFSTMI 608          
BLAST of mRNA_H-paniculata_contig49903.12204.1 vs. uniprot
Match: A0A2U1PK06_ARTAN (Pentatricopeptide repeat-containing protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1PK06_ARTAN)

HSP 1 Score: 54.7 bits (130), Expect = 6.100e-7
Identity = 28/72 (38.89%), Postives = 43/72 (59.72%), Query Frame = 1
Query:    1 LQREKCLEFLTETQLWKEMREDGLQPNVINYNLVVRALGRAGKWDQAVALLDDMREKGVEPDHRTFNAAIEV 216
            L+ ++  E +     W + + D L PNVI+YN+V+R LGRA KWD+      DM +KGV P + T+   ++V
Sbjct:  127 LKEQRSWEKVVRVFEWMKSQPDYL-PNVIHYNVVLRVLGRARKWDELRKCWVDMAQKGVFPTNNTYGMLVDV 197          
BLAST of mRNA_H-paniculata_contig49903.12204.1 vs. uniprot
Match: A0A5A7P4N5_STRAF (Pentatricopeptide repeat-containing protein n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7P4N5_STRAF)

HSP 1 Score: 54.7 bits (130), Expect = 6.100e-7
Identity = 27/57 (47.37%), Postives = 38/57 (66.67%), Query Frame = 1
Query:   46 WKEMREDGLQPNVINYNLVVRALGRAGKWDQAVALLDDMREKGVEPDHRTFNAAIEV 216
            W +  ED + PNVI+YN+V+R LGRA KWD+      +M EKGV P + T++  I+V
Sbjct:  144 WFKSHEDYV-PNVIHYNIVLRELGRAKKWDELRLCWIEMAEKGVLPTNNTYSMLIDV 199          
BLAST of mRNA_H-paniculata_contig49903.12204.1 vs. uniprot
Match: A0A6J1HNW8_CUCMA (pentatricopeptide repeat-containing protein At1g73710 n=3 Tax=Cucurbita TaxID=3660 RepID=A0A6J1HNW8_CUCMA)

HSP 1 Score: 54.7 bits (130), Expect = 6.100e-7
Identity = 26/72 (36.11%), Postives = 46/72 (63.89%), Query Frame = 1
Query:    1 LQREKCLEFLTETQLWKEMREDGLQPNVINYNLVVRALGRAGKWDQAVALLDDMREKGVEPDHRTFNAAIEV 216
            L+ ++  E + +   W + ++D + PNVI+YN+V+RALGRA KWD+     ++M E G+ P + T+   ++V
Sbjct:  131 LKEQRQWERVLQVFQWFKSQKDYV-PNVIHYNIVLRALGRAQKWDELRLCWNEMAENGIIPSNNTYGMLVDV 201          
BLAST of mRNA_H-paniculata_contig49903.12204.1 vs. uniprot
Match: A0A251S8L7_HELAN (Putative pentatricopeptide repeat (PPR) superfamily protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251S8L7_HELAN)

HSP 1 Score: 54.3 bits (129), Expect = 8.340e-7
Identity = 26/57 (45.61%), Postives = 37/57 (64.91%), Query Frame = 1
Query:   46 WKEMREDGLQPNVINYNLVVRALGRAGKWDQAVALLDDMREKGVEPDHRTFNAAIEV 216
            W +++ D   PNVI+YN+V+RALGRA KWD       +M EKGV P + T+   ++V
Sbjct:  150 WMKLQPD-YSPNVIHYNVVLRALGRARKWDGLRRCWIEMAEKGVLPTNNTYGMLVDV 205          
BLAST of mRNA_H-paniculata_contig49903.12204.1 vs. uniprot
Match: A0A5J5A1X8_9ASTE (Uncharacterized protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J5A1X8_9ASTE)

HSP 1 Score: 53.9 bits (128), Expect = 1.120e-6
Identity = 27/72 (37.50%), Postives = 46/72 (63.89%), Query Frame = 1
Query:    1 LQREKCLEFLTETQLWKEMREDGLQPNVINYNLVVRALGRAGKWDQAVALLDDMREKGVEPDHRTFNAAIEV 216
            L+ ++  E + +   W + +++ L PNVI+YN+V+RALGRA KWD+      +M +KGV P + T+   ++V
Sbjct:  158 LKEQRSWERVVKVFEWMKSQKEYL-PNVIHYNVVLRALGRARKWDELRLCWIEMAKKGVLPTNNTYGMLVDV 228          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig49903.12204.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A811S116_9POAL6.740e-846.55Hypothetical protein n=3 Tax=Andropogoneae TaxID=1... [more]
UPI001900DC381.280e-747.37pentatricopeptide repeat-containing protein At1g73... [more]
PPR10_MAIZE3.240e-744.83Pentatricopeptide repeat-containing protein 10, ch... [more]
A0A8K0K9Q1_LADFU5.640e-740.74Uncharacterized protein n=1 Tax=Ladona fulva TaxID... [more]
D8LCM4_ECTSI6.040e-745.10Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A2U1PK06_ARTAN6.100e-738.89Pentatricopeptide repeat-containing protein n=1 Ta... [more]
A0A5A7P4N5_STRAF6.100e-747.37Pentatricopeptide repeat-containing protein n=1 Ta... [more]
A0A6J1HNW8_CUCMA6.100e-736.11pentatricopeptide repeat-containing protein At1g73... [more]
A0A251S8L7_HELAN8.340e-745.61Putative pentatricopeptide repeat (PPR) superfamil... [more]
A0A5J5A1X8_9ASTE1.120e-637.50Uncharacterized protein n=1 Tax=Nyssa sinensis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig49903contigH-paniculata_contig49903:570..785 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930468.7419162-CDS-H-paniculata_contig49903:569..7851622930468.7419162-CDS-H-paniculata_contig49903:569..785Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49903 570..785 -
1691481305.2871048-CDS-H-paniculata_contig49903:569..7851691481305.2871048-CDS-H-paniculata_contig49903:569..785Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49903 570..785 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig49903.12204.1prot_H-paniculata_contig49903.12204.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig49903 570..785 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig49903.12204.1

>prot_H-paniculata_contig49903.12204.1 ID=prot_H-paniculata_contig49903.12204.1|Name=mRNA_H-paniculata_contig49903.12204.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
LQREKCLEFLTETQLWKEMREDGLQPNVINYNLVVRALGRAGKWDQAVAL
LDDMREKGVEPDHRTFNAAIEV
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mRNA from alignment at H-paniculata_contig49903:570..785-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig49903.12204.1 ID=mRNA_H-paniculata_contig49903.12204.1|Name=mRNA_H-paniculata_contig49903.12204.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=216bp|location=Sequence derived from alignment at H-paniculata_contig49903:570..785- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGCAACGCGAAAAATGTCTTGAATTTCTTACGGAAACGCAACTTTGGAA GGAAATGCGAGAGGATGGGCTCCAGCCGAACGTTATCAACTACAACCTCG TTGTACGAGCGCTGGGAAGGGCGGGCAAGTGGGACCAGGCCGTTGCGCTT CTGGACGACATGCGAGAGAAGGGCGTGGAACCGGACCATAGGACATTCAA CGCTGCAATCGAGGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig49903:570..785-

>mRNA_H-paniculata_contig49903.12204.1 ID=mRNA_H-paniculata_contig49903.12204.1|Name=mRNA_H-paniculata_contig49903.12204.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig49903:570..785- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGCAACGCGAAAAATGTCTTGAATTTCTTACGGAAACGCAACTTTGGAA
GGAAATGCGAGAGGATGGGCTCCAGCCGAACGTTATCAACTACAACCTCG
TTGTACGAGCGCTGGGAAGGGCGGGCAAGTGGGACCAGGCCGTTGCGCTT
CTGGACGACATGCGAGAGAAGGGCGTGGAACCGGACCATAGGACATTCAA
CGCTGCAATCGAGGTATTGCAACGCGAAAAATGTCTTGAATTTCTTACGG
AAACGCAACTTTGGAAGGAAATGCGAGAGGATGGGCTCCAGCCGAACGTT
ATCAACTACAACCTCGTTGTACGAGCGCTGGGAAGGGCGGGCAAGTGGGA
CCAGGCCGTTGCGCTTCTGGACGACATGCGAGAGAAGGGCGTGGAACCGG
ACCATAGGACATTCAACGCTGCAATCGAGGTA
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