mRNA_H-paniculata_contig4980.12185.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4980.12185.1
Unique NamemRNA_H-paniculata_contig4980.12185.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4980.12185.1 vs. uniprot
Match: D8LEV4_ECTSI (C2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEV4_ECTSI)

HSP 1 Score: 149 bits (375), Expect = 4.800e-38
Identity = 83/195 (42.56%), Postives = 112/195 (57.44%), Query Frame = 3 
Query:    6 EVVMATTSIDLATIHNGYNYVSLFSTGPNSGKDEQVGGLLGQLILRLNWVEPGAGTNTEKRAE----YATLLIRGASSLATAKSHGASISHCVVKWRGMELGRTQSCRNTLDPHWGEEKFQLALSDHSIEETPA---LLMEVWAEDTRGNWRHFLGQVAIEAGEVESSTPGFRSLALTRKPAAELRPSAQKFVQG 569
            E+V+A  S+D+  + +GYNYV LFS+G                       EPG G  +++       Y TL+I GAS LA A   G S  +CVVKW G+ELGRT++C NT +P WG+E+F+LAL      +      L++EVW ED  G    FLGQV ++A ++E   PG R + L+RKPAAEL+ S QK VQG
Sbjct: 4098 EIVLAYASVDINAVRDGYNYVQLFSSGHRDDXXXXX------XXXXXXXAEPGEGGGSKEELGWGRGYTTLVIHGASGLAKADRLGDSDPYCVVKWGGVELGRTKTCPNTREPKWGDERFRLALPAEEPNDKKKHLPLILEVWDEDMPGTKGDFLGQVVLQANKLEDPAPGPRGIVLSRKPAAELKLSKQKLVQG 4286
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BLAST of mRNA_H-paniculata_contig4980.12185.1 vs. uniprot
Match: A0A6H5KK33_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK33_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 2.280e-8
Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = 3 
Query:  396 LLMEVWAEDTRGNWRHFLGQVAIEAGEVESSTPGFRSLALTRKPAAELRPSAQKFVQG 569
            L++EVW ED  G    FLGQV ++A ++E   PG R + L++KPAAEL+ S QK VQG
Sbjct: 1194 LILEVWDEDMPGTKGDFLGQVVLQANKLEDPAPGPRGIVLSKKPAAELKLSKQKLVQG 1251
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4980.12185.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEV4_ECTSI4.800e-3842.56C2 domain containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5KK33_9PHAE2.280e-851.72C2 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4980contigH-paniculata_contig4980:4464..5562 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.8
Seed ortholog evalue4e-32
Seed eggNOG ortholog2880.D8LEV4
KEGG koko:K12486
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GTPase activator activity
EggNOG OGsKOG1030@1,KOG1030@2759
Ec32 ortholog descriptionC2 domain
Ec32 orthologEc-21_005700.1
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons3
Model size571
Cds size555
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4980.12185.1prot_H-paniculata_contig4980.12185.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4980 4464..5548 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930466.501426-CDS-H-paniculata_contig4980:4463..45771622930466.501426-CDS-H-paniculata_contig4980:4463..4577Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4980 4464..4577 -
1691481304.2651658-CDS-H-paniculata_contig4980:4463..45771691481304.2651658-CDS-H-paniculata_contig4980:4463..4577Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4980 4464..4577 -
1622930466.5207253-CDS-H-paniculata_contig4980:4969..51801622930466.5207253-CDS-H-paniculata_contig4980:4969..5180Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4980 4970..5180 -
1691481304.2799776-CDS-H-paniculata_contig4980:4969..51801691481304.2799776-CDS-H-paniculata_contig4980:4969..5180Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4980 4970..5180 -
1622930466.5337238-CDS-H-paniculata_contig4980:5318..55481622930466.5337238-CDS-H-paniculata_contig4980:5318..5548Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4980 5319..5548 -
1691481304.2896302-CDS-H-paniculata_contig4980:5318..55481691481304.2896302-CDS-H-paniculata_contig4980:5318..5548Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4980 5319..5548 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930466.5481555-UTR-H-paniculata_contig4980:5548..55621622930466.5481555-UTR-H-paniculata_contig4980:5548..5562Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4980 5549..5562 -
1691481304.300832-UTR-H-paniculata_contig4980:5548..55621691481304.300832-UTR-H-paniculata_contig4980:5548..5562Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4980 5549..5562 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4980.12185.1

>prot_H-paniculata_contig4980.12185.1 ID=prot_H-paniculata_contig4980.12185.1|Name=mRNA_H-paniculata_contig4980.12185.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=185bp
MATTSIDLATIHNGYNYVSLFSTGPNSGKDEQVGGLLGQLILRLNWVEPG
AGTNTEKRAEYATLLIRGASSLATAKSHGASISHCVVKWRGMELGRTQSC
RNTLDPHWGEEKFQLALSDHSIEETPALLMEVWAEDTRGNWRHFLGQVAI
EAGEVESSTPGFRSLALTRKPAAELRPSAQKFVQG
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mRNA from alignment at H-paniculata_contig4980:4464..5562-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4980.12185.1 ID=mRNA_H-paniculata_contig4980.12185.1|Name=mRNA_H-paniculata_contig4980.12185.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1099bp|location=Sequence derived from alignment at H-paniculata_contig4980:4464..5562- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACAGGAGGTGGTGATGGCCACGACGTCCATAGATCTAGCCACGATACAC
AACGGGTACAATTACGTTTCGCTCTTTTCAACTGGACCCAATTCCGGCAA
GGACGAACAAGTGGGGGGGTTACTAGGGCAGCTGATTCTTCGTCTCAACT
GGGTTGAACCTGGGGCAGGGACCAATACAGAGAAACGAGCGGAGTATGCC
ACCTTGCTCATCAGAGGCGCTTCTAGCTTAGCTACAGCCAAAAGGTGATA
TTTTCCCTGCTGAGACCGATTCAATACTTGTCCTACGTTGTCAAAATCAT
ACTGTGTGTCTGTGTGTAACCGCAATGGTCATTTGCTACTCTTCTGTCAC
TTGGCGTGTATCGTTCTTTGGCTTCGTTGTAGCCACGGGGCATCAATTTC
GCACTGTGTTGTCAAGTGGAGGGGGATGGAGCTTGGACGGACGCAATCCT
GCAGGAATACACTTGACCCGCACTGGGGCGAGGAAAAATTCCAACTTGCC
TTGTCAGATCACTCGATAGAGGAAACACCTGCGTTGTTGATGGAAGTTTG
GGCTGAGGACACAAGAGGAAACTGGCGCCACTTCTTGGGGCAGGTGATTC
AGCGTGCATACGTCAAAATCAAAGGGTTGTCGCTGGGCACGGGCGTGGTA
TCGATTTGTTGGTTGCTTGGGTACTGTTCCGGTGGATTCCATTCCAAAGT
TCAGTCGAACTGCCTTATGTGTCTTCTGACTAATGTATTGGGGTGAGTTC
CCGCTACGGAATACAAGCACAGCCACCATCATGTACGCATGTGCCCTATA
TGGGCGTACCTTGCCTAGGATGGATCCTACGTGTCACAACGTTTGATTGG
TACACCGAGCAGTTACTTGCTTCCGGTCCGCGAAATGTTTGAAACACCCA
AAATACAATGATCTCTCGTCCTCTTACCCCAGAACACACGAACGACGAAC
TGAGACACATACCCACGGCGTCACAACCGTTGCAGGTTGCTATCGAAGCC
GGAGAGGTCGAGTCCTCTACTCCCGGCTTTCGAAGCCTGGCACTTACCCG
CAAACCTGCCGCCGAGCTCCGCCCATCTGCTCAAAAGTTCGTTCAAGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig4980:4464..5562-

>mRNA_H-paniculata_contig4980.12185.1 ID=mRNA_H-paniculata_contig4980.12185.1|Name=mRNA_H-paniculata_contig4980.12185.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1110bp|location=Sequence derived from alignment at H-paniculata_contig4980:4464..5562- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCACGACGTCCATAGATCTAGCCACGATACACAACGGGTACAATTA
CGTTTCGCTCTTTTCAACTGGACCCAATTCCGGCAAGGACGAACAAGTGG
GGGGGTTACTAGGGCAGCTGATTCTTCGTCTCAACTGGGTTGAACCTGGG
GCAGGGACCAATACAGAGAAACGAGCGGAGTATGCCACCTTGCTCATCAG
AGGCGCTTCTAGCTTAGCTACAGCCAAAAGATGGCCACGACGTCCATAGA
TCTAGCCACGATACACAACGGGTACAATTACGTTTCGCTCTTTTCAACTG
GACCCAATTCCGGCAAGGACGAACAAGTGGGGGGGTTACTAGGGCAGCTG
ATTCTTCGTCTCAACTGGGTTGAACCTGGGGCAGGGACCAATACAGAGAA
ACGAGCGGAGTATGCCACCTTGCTCATCAGAGGCGCTTCTAGCTTAGCTA
CAGCCAAAAGCCACGGGGCATCAATTTCGCACTGTGTTGTCAAGTGGAGG
GGGATGGAGCTTGGACGGACGCAATCCTGCAGGAATACACTTGACCCGCA
CTGGGGCGAGGAAAAATTCCAACTTGCCTTGTCAGATCACTCGATAGAGG
AAACACCTGCGTTGTTGATGGAAGTTTGGGCTGAGGACACAAGAGGAAAC
TGGCGCCACTTCTTGGGGCAGCCACGGGGCATCAATTTCGCACTGTGTTG
TCAAGTGGAGGGGGATGGAGCTTGGACGGACGCAATCCTGCAGGAATACA
CTTGACCCGCACTGGGGCGAGGAAAAATTCCAACTTGCCTTGTCAGATCA
CTCGATAGAGGAAACACCTGCGTTGTTGATGGAAGTTTGGGCTGAGGACA
CAAGAGGAAACTGGCGCCACTTCTTGGGGCAGGTTGCTATCGAAGCCGGA
GAGGTCGAGTCCTCTACTCCCGGCTTTCGAAGCCTGGCACTTACCCGCAA
ACCTGCCGCCGAGCTCCGCCCATCTGCTCAAAAGTTCGTTCAAGGGGTTG
CTATCGAAGCCGGAGAGGTCGAGTCCTCTACTCCCGGCTTTCGAAGCCTG
GCACTTACCCGCAAACCTGCCGCCGAGCTCCGCCCATCTGCTCAAAAGTT
CGTTCAAGGG
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