mRNA_H-paniculata_contig11902.1218.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11902.1218.1
Unique NamemRNA_H-paniculata_contig11902.1218.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11902.1218.1 vs. uniprot
Match: A0A6H5J913_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J913_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 5.000e-5
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 3 
Query:    3 PSYGVAGTKQAEMCARHADEGMVNVVSKKCSHRGCSRRAS 122
            PSYG A  K+AE C RHA +GM+NVV++KCSH GC + AS
Sbjct:  237 PSYG-ARLKKAEFCKRHAKQGMINVVTRKCSHPGCIKSAS 275
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11902.1218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J913_9PHAE5.000e-562.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11902contigH-paniculata_contig11902:356..1239 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size884
Cds size474
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11902.1218.1prot_H-paniculata_contig11902.1218.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11902 394..867 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928905.2585056-UTR-H-paniculata_contig11902:355..3931622928905.2585056-UTR-H-paniculata_contig11902:355..393Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11902 356..393 +
1691480662.455486-UTR-H-paniculata_contig11902:355..3931691480662.455486-UTR-H-paniculata_contig11902:355..393Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11902 356..393 +
1622928905.2812412-UTR-H-paniculata_contig11902:867..12391622928905.2812412-UTR-H-paniculata_contig11902:867..1239Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11902 868..1239 +
1691480662.4774532-UTR-H-paniculata_contig11902:867..12391691480662.4774532-UTR-H-paniculata_contig11902:867..1239Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11902 868..1239 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928905.2698703-CDS-H-paniculata_contig11902:393..8671622928905.2698703-CDS-H-paniculata_contig11902:393..867Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11902 394..867 +
1691480662.4694803-CDS-H-paniculata_contig11902:393..8671691480662.4694803-CDS-H-paniculata_contig11902:393..867Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11902 394..867 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11902.1218.1

>prot_H-paniculata_contig11902.1218.1 ID=prot_H-paniculata_contig11902.1218.1|Name=mRNA_H-paniculata_contig11902.1218.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=158bp
MCARHADEGMVNVVSKKCSHRGCSRRASYGVAGTKQAEMCARHADDGMVS
VKKPSSLSQVKLEVASEDVDGHGCSATVQTGRKRNSALMVPSHSGSSTLR
ESRSAKRARMFGRLSIIEQLALRTPAAGMSSHDNGANLKTEVAALRRSVP
DPVIQQH*
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mRNA from alignment at H-paniculata_contig11902:356..1239+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11902.1218.1 ID=mRNA_H-paniculata_contig11902.1218.1|Name=mRNA_H-paniculata_contig11902.1218.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=884bp|location=Sequence derived from alignment at H-paniculata_contig11902:356..1239+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCCGTCGTATGGGGTGGCGGGGACGAAACAGGCAGAGATGTGTGCGCGG
CATGCCGACGAGGGGATGGTGAACGTGGTGAGCAAGAAGTGCTCCCATCG
GGGCTGCTCTAGACGTGCGTCGTATGGGGTGGCGGGGACGAAACAGGCGG
AGATGTGTGCGCGGCATGCCGACGACGGGATGGTTAGTGTGAAGAAACCG
TCTAGTCTCTCGCAGGTTAAGCTTGAAGTGGCTTCGGAGGACGTCGATGG
TCATGGATGTTCCGCGACTGTGCAGACAGGCAGAAAACGCAACTCCGCAC
TAATGGTTCCGTCACACAGCGGTAGTTCTACCTTGCGCGAGAGTCGCAGC
GCAAAGCGGGCTCGCATGTTCGGTAGATTAAGTATCATAGAGCAGCTAGC
CCTCCGCACGCCTGCGGCAGGCATGTCATCTCACGACAATGGGGCTAATC
TGAAGACTGAGGTGGCTGCATTGCGGCGTTCCGTGCCGGACCCCGTTATA
CAGCAGCACTGACTGCTGCTGGTCGTGGAGGCATCAAGTGTGAAGCGTGC
TTCGAAGCACGAGAGAGTCGTCGGTGATGATGCCGCCATTTTTAGTATTT
AGACATGGTACTAGAGACATAGCTCGCGCAGGAGACTGTACTGCTGGCAT
GAATTTTGGGTGCCCAGGAGTTGCTTGAGTACAGATTGGAAAAACTGTTC
CAACACGACCAAATATTTGGTGTCCAGGAGCTGCTTCGAGATCGACCCGA
GCATGAACCGCCCGAGAGACTCCTTATGGATGCTTACGTCGGAAACAAGA
TGGTCCAGACGAGATATGTCACCTGGGAGGCGCCAGCTACTACGCTACCG
CCGGTACCGTTGTCTGCGGTACAGGAGGCGGTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig11902:356..1239+

>mRNA_H-paniculata_contig11902.1218.1 ID=mRNA_H-paniculata_contig11902.1218.1|Name=mRNA_H-paniculata_contig11902.1218.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=948bp|location=Sequence derived from alignment at H-paniculata_contig11902:356..1239+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGTGCGCGGCATGCCGACGAGGGGATGGTGAACGTGGTGAGCAAGAA
GTGCTCCCATCGGGGCTGCTCTAGACGTGCGTCGTATGGGGTGGCGGGGA
CGAAACAGGCGGAGATGTGTGCGCGGCATGCCGACGACGGGATGGTTAGT
GTGAAGAAACCGTCTAGTCTCTCGCAGGTTAAGCTTGAAGTGGCTTCGGA
GGACGTCGATGGTCATGGATGTTCCGCGACTGTGCAGACAGGCAGAAAAC
GCAACTCCGCACTAATGGTTCCGTCACACAGCGGTAGTTCTACCTTGCGC
GAGAGTCGCAGCGCAAAGCGGGCTCGCATGTTCGGTAGATTAAGTATCAT
AGAGCAGCTAGCCCTCCGCACGCCTGCGGCAGGCATGTCATCTCACGACA
ATGGGGCTAATCTGAAGACTGAGGTGGCTGCATTGCGGCGTTCCGTGCCG
GACCCCGTTATACAGCAGCACTGAATGTGTGCGCGGCATGCCGACGAGGG
GATGGTGAACGTGGTGAGCAAGAAGTGCTCCCATCGGGGCTGCTCTAGAC
GTGCGTCGTATGGGGTGGCGGGGACGAAACAGGCGGAGATGTGTGCGCGG
CATGCCGACGACGGGATGGTTAGTGTGAAGAAACCGTCTAGTCTCTCGCA
GGTTAAGCTTGAAGTGGCTTCGGAGGACGTCGATGGTCATGGATGTTCCG
CGACTGTGCAGACAGGCAGAAAACGCAACTCCGCACTAATGGTTCCGTCA
CACAGCGGTAGTTCTACCTTGCGCGAGAGTCGCAGCGCAAAGCGGGCTCG
CATGTTCGGTAGATTAAGTATCATAGAGCAGCTAGCCCTCCGCACGCCTG
CGGCAGGCATGTCATCTCACGACAATGGGGCTAATCTGAAGACTGAGGTG
GCTGCATTGCGGCGTTCCGTGCCGGACCCCGTTATACAGCAGCACTGA
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