prot_H-paniculata_contig4972.12168.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig4972.12168.1
Unique Name	prot_H-paniculata_contig4972.12168.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	283

Homology

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BLAST of mRNA_H-paniculata_contig4972.12168.1 vs. uniprot
Match: D7FV38_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV38_ECTSI)

HSP 1 Score: 230 bits (586), Expect = 2.330e-71
Identity = 144/272 (52.94%), Postives = 168/272 (61.76%), Query Frame = 0

Query:    5 ETGKGSWLVFATLLVSSSVVLILEWNKTCDGRLRQWLLTAVCVTAVCGILGAIFHGRGDSTRPSRFLDDDEE---DDDY----------GQPAPTMGMDLDPMEAVQHGLGDAGEPGTTLPTLAEEEGMSP---FPGGSTAS--DAPESCGT-SVTSRRESTVSAQLAMRASSSLQRQYFGAGPKVFPDIIFLILVSSQWFMAAWSIVGAVLYFRLFEADRTCSPLLRHWTLLVVIMGFLSCLLTVCY---------SGIMCCMMGMPFDNG 248
            +TG GSW     LLVSSSVVL L+WNK CDG LR WLLT VCVTA+C  LGAIFHGRG+ TRPSRFLDDD+    DDD           G        ++ P +A  +G G   +   T P   EE G S      GG  A   +  +S G  S+ S   ST+S +LA + SSSLQ +YFG GPKVFPD IF ILV SQWF+A WS+VGA LYFRLF  +RTCSPLLRHWTLLVVI+GFLSCLL VC          SG+M    G+  + G
Sbjct:    7 DTGVGSWAALVLLLVSSSVVLGLQWNKECDGGLRTWLLTTVCVTAICSGLGAIFHGRGNGTRPSRFLDDDDAWGVDDDSINVSVSSAAGGTGGRASPPEMGPEDA--NGNGKRSDIRITPPFKMEEGGGSGGKGVNGGGMAGGEERRDSMGDESIVSGVPSTISHRLAAQ-SSSLQHRYFGPGPKVFPDTIFFILVVSQWFLAGWSVVGAALYFRLFTGNRTCSPLLRHWTLLVVIIGFLSCLLAVCSWGQRVSEMESGVMAAASGLRHERG 275

[Close]

BLAST of mRNA_H-paniculata_contig4972.12168.1 vs. uniprot
Match: A0A6H5K0Y0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Y0_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 1.870e-55
Identity = 124/248 (50.00%), Postives = 147/248 (59.27%), Query Frame = 0

Query:   53 ILGAIFHGRGDSTRPSRFLDDDE--EDDDY------GQPAPTMGMDLDPMEAVQHGLGDAGEPGTTLPTLAEEEGMS--------PFPGGSTASDAPESCGT-SVTSRRESTVSAQLAMRASSSLQRQYFGAGPKVFPDIIFLILVSSQWFMAAWSIVGAVLYFRLFEADRTCSPLLRHWTLLVVIMGFLSCLLTVCYSGIMCCMMGMPFDNGRHCSRNGQRNGWE-DETACTDISDNGRDMKGVGMM 282
            +LGA FHGRGD TRPSRFLDDD    DDD            T G    P    +H  G+  +   T P   EE G             GG    D   S G  S+ S   ST+S +LA + SSSLQ +YFG GPKVFPD IF ILV SQWF+A WS+VGA LYFRLF  +R CSPLLRHWTLLVVI+GFLSCLL VCYSGIMCCM+G PF   R  + +G+R+ +  D  + +D +  G +    GMM
Sbjct:    1 MLGATFHGRGDGTRPSRFLDDDAWGVDDDSINVSVSSAAGGTGGRASPPEMGPEHTNGNGSDIRITPPFKMEEGGGDGGKRVNGXXMAGGEERRD---SMGDESIVSGVPSTISHRLAAQ-SSSLQHRYFGPGPKVFPDTIFFILVVSQWFLAGWSVVGAALYFRLFTGNRMCSPLLRHWTLLVVIIGFLSCLLAVCYSGIMCCMLGAPFSRSRGRNGSGERDQFHADLPSSSDSTSTGNEP---GMM 241

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig4972.12168.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig4972.12168.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7FV38_ECTSI	2.330e-71	52.94	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5K0Y0_9PHAE	1.870e-55	50.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..8
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 200..218
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 9..27
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 28..38
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 219..243
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 175..199
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 39..59
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 244..282
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 60..174
None	No IPR available	TMHMM	TMhelix		coord: 10..27
None	No IPR available	TMHMM	TMhelix		coord: 215..237
None	No IPR available	TMHMM	TMhelix		coord: 40..62
None	No IPR available	TMHMM	TMhelix		coord: 180..202

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig4972	contig	H-paniculata_contig4972:4136..11804 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig4972.12168.1	mRNA_H-paniculata_contig4972.12168.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig4972 2682..12350 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig4972.12168.1 ID=prot_H-paniculata_contig4972.12168.1|Name=mRNA_H-paniculata_contig4972.12168.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=283bp
MSRGETGKGSWLVFATLLVSSSVVLILEWNKTCDGRLRQWLLTAVCVTAV
CGILGAIFHGRGDSTRPSRFLDDDEEDDDYGQPAPTMGMDLDPMEAVQHG
LGDAGEPGTTLPTLAEEEGMSPFPGGSTASDAPESCGTSVTSRRESTVSA
QLAMRASSSLQRQYFGAGPKVFPDIIFLILVSSQWFMAAWSIVGAVLYFR
LFEADRTCSPLLRHWTLLVVIMGFLSCLLTVCYSGIMCCMMGMPFDNGRH
CSRNGQRNGWEDETACTDISDNGRDMKGVGMM*