prot_H-paniculata_contig4956.12147.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4956.12147.1
Unique Nameprot_H-paniculata_contig4956.12147.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length953
Homology
BLAST of mRNA_H-paniculata_contig4956.12147.1 vs. uniprot
Match: A0A6H5K714_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K714_9PHAE)

HSP 1 Score: 331 bits (848), Expect = 6.180e-93
Identity = 306/742 (41.24%), Postives = 361/742 (48.65%), Query Frame = 0
Query:    1 ILPVTYASLKQSDAVGALKSLKKHTDQSVRKMSKAVISHWKTALVGDGAEIGKHREKLDELHDKLKETQEAEKAXXXXXXXXXXARRDAMRGRL-PINGTG-PPVSAPPPPVLYTRASSANSINSSVDSD--------ATSTPSKVSGPKMGTSEIDPSATAXXXXXXXXXXXXXXXXXXPGGGTNTTSESTPKNGGTAPDQSAASIATGATGAVGPGVASGPGRFFVGRKFPGRGARGRMGTLAAAGRGNNAGSPGPRKGKPPANAGAMRGGAAVAGKPGAAAVATGASVPGAPVATPSVGILKTSA--SAATAAGSSSTSSQGLTGSLDGGILSLGLVGAADVGAVGGIGGTGVGSGNAGDPMVVEGAAEGSASXXXXXXXXXXXXXXXXXXXXPIVSMEDLTRADALAKKKQRKAKRLEPAAKKVSWADRAGRVLHAIKEFHSEDSPRTVSDPTSSPDADGQSADNLSLHHAGHSHWAERVKREREMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA-------RKAMKPTVAWRRPGPYEDGVVHEDVIALEVESSEAESQGARTRAGLEQVYLSSGDIPPSPAEPDASSFIPTGDVSMYKIPFFMESELEQALQEXXXXXXXXXXXXXAP-PVKVGVTLEQMQALEAALATVDQHAANALRGRFSQEPRLLTSLIGVNNQINVPLLRSLAQQALSTPLNVHLSIPV-------LPMPAAAPPQ 715
            +LPVTY+SL QSDA  ALK+L KH D  +RK +KAVISHW+TALV D  EI KHR++LD+LHDKLK  Q+AEK            RRD  R +  P NG G  P++APPP                            A    S  S P       DP A A                    G   T S                      TGA       G  R+FVGRK  GRG  GR+     A  G  AG  G  KG               AG                        ILK +A  +AATA G   T++ G                                +  A  P     A  GS                      PIVS++++ RA++  KK+ RKAK   PA KKV WADRAGR L  +KEFHSED+   VS+     ++D   A  ++ HHAGH HWAERVKREREM                           XXXXXXXXXXXXXXXX        RK M   V WRRPGPYE GVVHEDV+ LEVESSEAESQGARTRAGLEQVYLSSGDIP +PAEPDA+SF+P  +V MYKIPF+MESELEQ   E              P PVKV  TL+Q++AL+ ALA+VD HAA ALR RF+ EPRLL++L+    ++N  LLRS++QQALSTP NVHL++P         P  A  PPQ
Sbjct:  229 VLPVTYSSLMQSDAGKALKALNKHADSDIRKQAKAVISHWRTALVSDKGEIAKHRKQLDDLHDKLKAKQDAEKKAKAELADAEKRRRDLARAQSRPPNGVGGSPITAPPPXXXXXXXXXXXXXXXXXXXXXXXXXXXPAAKGVSAASKPGR-----DPPAAAADSS----------------GAPGTGSXXXXXXXXXXXXXXXXXXXXSETGAAAXXXXGGAARYFVGRKLAGRGPGGRVRRPTVAFSGTPAGQ-GTGKGDRGXXXXXXXXXXXXAGXXXXXXXXXX--------------ILKVTAVSTAATAGGQDGTAAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTA-ASAPAASRSAGIGSGPP-------------------PIVSLDEMARAESEEKKRLRKAK---PAGKKVGWADRAGRTLQVVKEFHSEDAATAVSETPQ--ESDSVVAATMASHHAGHRHWAERVKREREMERKFHGKSGGRSKGKSDHGRASAGDEEXXXXXXXXXXXXXXXXXXXXXXXKRKPMVTAVPWRRPGPYEKGVVHEDVLQLEVESSEAESQGARTRAGLEQVYLSSGDIPSTPAEPDAASFLPVDEVQMYKIPFYMESELEQMQAEALKEQQQQQAPANQPGPVKV--TLQQVRALDDALASVDPHAATALRSRFASEPRLLSALLAPEGRVNNALLRSMSQQALSTPSNVHLTLPAGVPTLQASPSYAPGPPQ 907          
BLAST of mRNA_H-paniculata_contig4956.12147.1 vs. uniprot
Match: D8LNV8_ECTSI (TFIIS N-terminal domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNV8_ECTSI)

HSP 1 Score: 259 bits (662), Expect = 2.520e-71
Identity = 192/337 (56.97%), Postives = 226/337 (67.06%), Query Frame = 0
Query:  385 PIVSMEDLTRADALAKKKQRKAKRLEPAAKKVSWADRAGRVLH---------------------AIKEFHSEDSPRTVSDPTSSPDADGQSADNLSLHHAGHSHWAERVKREREMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA---------RKAMKPTVAWRRPGPYEDGVVHEDVIALEVESSEAESQGARTRAGLEQVYLSSGDIPPSPAEPDASSFIPTGDVSMYKIPFFMESELEQALQEXXXXXXXXXXXXXAP-PVKVGVTLEQMQALEAALATVDQHAANALRGRFSQEPRLLTSLIGVNNQINVPLLRSLAQ 690
            PIVS++++ RA++  KK+ RKAK   PA KKV WADRAGR L                       +KEFHSED+   VS+     ++D  +A  ++ HHAGH HWAERVKREREM             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          RK M  TV WRRPGPYE GVVHEDV+ LEVESSEAESQGARTRAGLEQVYLSSGDIP +PAEPDA+SF+P  +V MYKIPF+MESELEQ   E              P PVKV  TL+Q++AL+ ALA+VD HAA ALR RF+ EPRLL++L+    ++N  LLRS++Q
Sbjct:  337 PIVSLDEMARAESEEKKRLRKAK---PAGKKVGWADRAGRTLQESVEGRRLMLMNHPGTRRALQVVKEFHSEDAATAVSETPQ--ESDSVAATTMASHHAGHRHWAERVKREREMERKFHGKSGGRSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKKRKPMVTTVPWRRPGPYEKGVVHEDVLQLEVESSEAESQGARTRAGLEQVYLSSGDIPSTPAEPDAASFLPVDEVQMYKIPFYMESELEQMQAEAPKEQQQQQPPANQPGPVKV--TLQQVRALDDALASVDPHAATALRSRFASEPRLLSALLAPEGRVNNALLRSMSQ 666          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4956.12147.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K714_9PHAE6.180e-9341.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNV8_ECTSI2.520e-7156.97TFIIS N-terminal domain-containing protein (Fragme... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 51..88
NoneNo IPR availableCOILSCoilCoilcoord: 505..525
NoneNo IPR availableCOILSCoilCoilcoord: 605..629
NoneNo IPR availablePANTHERPTHR14445GRB10 INTERACTING GYF PROTEINcoord: 236..733
NoneNo IPR availablePANTHERPTHR14445:SF41coord: 236..733
IPR017923Transcription factor IIS, N-terminalPROSITEPS51319TFIIS_Ncoord: 1..47
score: 11.852
IPR035441TFIIS/LEDGF domain superfamilySUPERFAMILY47676Conserved domain common to transcription factors TFIIS, elongin A, CRSP70coord: 2..45

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4956contigH-paniculata_contig4956:5214..13875 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4956.12147.1mRNA_H-paniculata_contig4956.12147.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4956 5213..13875 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4956.12147.1 ID=prot_H-paniculata_contig4956.12147.1|Name=mRNA_H-paniculata_contig4956.12147.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=953bp
ILPVTYASLKQSDAVGALKSLKKHTDQSVRKMSKAVISHWKTALVGDGAE
IGKHREKLDELHDKLKETQEAEKAVKEEAERAEKARRDAMRGRLPINGTG
PPVSAPPPPVLYTRASSANSINSSVDSDATSTPSKVSGPKMGTSEIDPSA
TAAAVAAAAAGSAPYPVATAPGGGTNTTSESTPKNGGTAPDQSAASIATG
ATGAVGPGVASGPGRFFVGRKFPGRGARGRMGTLAAAGRGNNAGSPGPRK
GKPPANAGAMRGGAAVAGKPGAAAVATGASVPGAPVATPSVGILKTSASA
ATAAGSSSTSSQGLTGSLDGGILSLGLVGAADVGAVGGIGGTGVGSGNAG
DPMVVEGAAEGSASPPPPSSPPIGDDPAGASGPPPIVSMEDLTRADALAK
KKQRKAKRLEPAAKKVSWADRAGRVLHAIKEFHSEDSPRTVSDPTSSPDA
DGQSADNLSLHHAGHSHWAERVKREREMERKFHGKGKGKSKGGGEGGGRG
SSSAAAKAEAEAEAAAAIAAAARKAMKPTVAWRRPGPYEDGVVHEDVIAL
EVESSEAESQGARTRAGLEQVYLSSGDIPPSPAEPDASSFIPTGDVSMYK
IPFFMESELEQALQEQQQQQQQQQQQQQAPPVKVGVTLEQMQALEAALAT
VDQHAANALRGRFSQEPRLLTSLIGVNNQINVPLLRSLAQQALSTPLNVH
LSIPVLPMPAAAPPQPVGQQYVQHTQQPPQQLPPPPPPRTTVQAGAPLAP
VPGQEYVAQYTVQQPAPGAPTVVSSQTLSQQPQPQPQPQQQLVQQPPQIV
YSATQPPPVMLVSTAQQQQPQPQQQQQQVLTYIATTQPIPPPAINQQQIA
PQPGFYPPPQQSQQQQQPAQQAMGLPLPPPPPPPPPVVYRPAGTAAATTV
GAPVPHVDSLTGAYTQSRTDSTIDEWEPRGERGGYRARDGDSRDADSRGW
TGR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR017923TFIIS_N
IPR035441TFIIS/LEDGF_dom_sf