mRNA_H-paniculata_contig4945.12130.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4945.12130.1 vs. uniprot
Match: A0A6H5L7W1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7W1_9PHAE) HSP 1 Score: 244 bits (622), Expect = 5.260e-69 Identity = 156/404 (38.61%), Postives = 230/404 (56.93%), Query Frame = 1
Query: 454 RRVRSVGVAACLALVAVMLPLGRVSGFSAGEPIELEVTPGDTLEVPFEGINTGGLAVSFMQCTGDEYLSMSLSYNGT-LLSSSTLSSNECNRLIASGTTADEDEVSLDQLCAFRTSAAVRQGYTEKSVVVNATSFVSPGYVTVIMQNKGDIPASGELVMFTADRPAPNVDDTIDRVNTIAELDENTYTVTVDFQASANDDLSLCSSSSGCALYAYYLEVNDGIPNAEVNFGTTCQSEMGTLMYD-------------EIITT--ESTAT----------------------------------LATAAFTVRACLQFPAQVQAEYRVFLIVSPDTTSYSRVGFGLEDQLIFASPVLSVR-GDADVTCPEEVEETAAAGAVGRIV--PARATGAIALSLAAAATA 1506
R + S VA LAL++ GF G+PI++ VT GDTL + FEG +AVSF QC+GD Y+ M +S+NGT L++S+ + +++C R++ +AD+ + D LCAFR S V QGY E+S +++T+ V P Y+T N G I AS ++VMF+ + PAPN D+ IDRV E + N +TV +FQA +D + C+ GC+L AYY+E++ +A+ FGTTCQ+ G L+Y+ E+I E+TAT L+T +F V AC++FP A YR++++VSPDT SY+R GFG++DQL++AS ++V D+D CPE V+E A +GA R+V +RA+ A+A LA A A
Sbjct: 53 RPMASSAVALLLALLSRNPRGADAQGFEYGDPIDVVVTAGDTLAMSFEGGLATAVAVSFQQCSGDVYMDMDVSFNGTSLVTSTAVETSKCVRVVGQSASADDSAIFYDNLCAFRNSGPVGQGYLEESAELSSTT-VDPEYITAQFTNTGTITASAQVVMFSTEYPAPNADEAIDRVVAEYEQEGNIFTVDAEFQADGTEDENFCAGDDGCSLAAYYIEIDTESGDADRIFGTTCQASNGVLLYEGFTGVGDSTFSDTEVIDDDEETTATDEVGVTDDEIAETTTDDAEAVLNGTGGARTRSRALSTTSFDVTACVEFPKNTGAVYRMYIVVSPDTDSYTRTGFGVQDQLMYASDQITVEEDDSDYECPEVVDEEAGSGARPRVVLTASRASTAVAAGLAVATAA 455
BLAST of mRNA_H-paniculata_contig4945.12130.1 vs. uniprot
Match: D8LQ00_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ00_ECTSI) HSP 1 Score: 220 bits (561), Expect = 2.040e-61 Identity = 136/358 (37.99%), Postives = 203/358 (56.70%), Query Frame = 1
Query: 592 FEGINTGGLAVSFMQCTGDEYLSMSLSYNGT-LLSSSTLSSNECNRLIASGTTADEDEVSLDQLCAFRTSAAVRQGYTEKSVVVNATSFVSPGYVTVIMQNKGDIPASGELVMFTADRPAPNVDDTIDRVNTIAELDENTYTVTVDFQASANDDLSLCSSSSGCALYAYYLEVNDGIPNAEVNFGTTCQSEMGTLMY---------------------------------DEIITTESTAT----------------LATAAFTVRACLQFPAQVQAEYRVFLIVSPDTTSYSRVGFGLEDQLIFASPVLSVR-GDADVTCPEEVEETAAAGAVGRIV--PARATGAIALSLAAAATA 1506
FEG +AVSF QC+GD Y+ M +S+NGT L++S+ + +++C R++ +AD+ + D LCAF+ S V QGY E+S +++T+ V P Y+T N G + AS ++VMF+ + PAPN D+ IDRV E + N +TV +FQA +D + C+ +GC+L AYY+E++ +A+ FGTTCQ+ G L+Y DEI T + T L+T +F V AC++FP A YR++++VSPDT SY+R G+GL+DQL++AS ++V D+D CPE VEE +GA R+V +RA+ A+A LA AA A
Sbjct: 3 FEGSLATAVAVSFQQCSGDVYMDMDVSFNGTSLVTSTAVETSKCVRVVGQSASADDSAIFYDNLCAFQNSGPVGQGYLEESAELSSTN-VDPEYITAQFTNTGTVTASAQVVMFSTEYPAPNSDEAIDRVVAEFEQEGNIFTVDAEFQADGTEDENFCAGDNGCSLAAYYIEIDTESDDADRIFGTTCQATNGVLLYEGFTGVGDSTFSDTEVIGDDGETTATDEVGVTDDEIAETTTDDTEAVLNGAGGARTRSRALSTTSFDVSACVEFPKNTGAVYRMYIVVSPDTDSYTRTGYGLQDQLMYASDQITVEEDDSDYECPEVVEEEEGSGARPRVVLTASRASTAVAAGLAVAAAA 359 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4945.12130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4945.12130.1 >prot_H-paniculata_contig4945.12130.1 ID=prot_H-paniculata_contig4945.12130.1|Name=mRNA_H-paniculata_contig4945.12130.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=386bp MVSTCSRAMTARAAGVSNEHVNAVVRRRVRSVGVAACLALVAVMLPLGRVback to top mRNA from alignment at H-paniculata_contig4945:5240..14757- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4945.12130.1 ID=mRNA_H-paniculata_contig4945.12130.1|Name=mRNA_H-paniculata_contig4945.12130.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=9518bp|location=Sequence derived from alignment at H-paniculata_contig4945:5240..14757- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4945:5240..14757- >mRNA_H-paniculata_contig4945.12130.1 ID=mRNA_H-paniculata_contig4945.12130.1|Name=mRNA_H-paniculata_contig4945.12130.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2316bp|location=Sequence derived from alignment at H-paniculata_contig4945:5240..14757- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |