mRNA_H-paniculata_contig4939.12120.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4939.12120.1
Unique NamemRNA_H-paniculata_contig4939.12120.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4939.12120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4939contigH-paniculata_contig4939:12502..13394 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size895
Cds size891
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930457.8305104-CDS-H-paniculata_contig4939:12501..133921622930457.8305104-CDS-H-paniculata_contig4939:12501..13392Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4939 12502..13392 +
1691481300.6821978-CDS-H-paniculata_contig4939:12501..133921691481300.6821978-CDS-H-paniculata_contig4939:12501..13392Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4939 12502..13392 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4939.12120.1prot_H-paniculata_contig4939.12120.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4939 12502..13392 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4939.12120.1

>prot_H-paniculata_contig4939.12120.1 ID=prot_H-paniculata_contig4939.12120.1|Name=mRNA_H-paniculata_contig4939.12120.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=297bp
GRISVSSPVVPRPGVADKAKAVAEADGGVGEEDVIQNALKAAPKWQRETT
EVGRAPADASTAAVIRAQRAAEAKAAEAAAALKAREEAEERARQATKVLD
AAKAAAAAMSRASPKATTAVTTAHAAATATAAASAAHTVAATAAATVAAT
AAREQSKVETGVVAPVATEVEPGFAPRLERVESVSEENAAEVLEEPVLVP
AADIVVIEDDDTAREVAAAAAAATTAREDRLESYEVVPASHKDAERETGF
AAMAAVAAQQPKAAKVAQKSDEERAERSESAEMLSEPDDDDEEEEEH
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mRNA from alignment at H-paniculata_contig4939:12502..13394+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4939.12120.1 ID=mRNA_H-paniculata_contig4939.12120.1|Name=mRNA_H-paniculata_contig4939.12120.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=893bp|location=Sequence derived from alignment at H-paniculata_contig4939:12502..13394+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGAGGATCAGCGTCTCTTCTCCTGTCGTTCCCCGTCCGGGCGTGGCAGA
TAAGGCGAAAGCTGTAGCGGAGGCAGACGGCGGCGTCGGTGAGGAGGACG
TAATTCAAAACGCATTGAAAGCGGCCCCAAAATGGCAGCGCGAGACGACC
GAGGTTGGAAGGGCGCCGGCCGATGCCTCCACCGCTGCCGTCATTCGCGC
ACAACGAGCGGCGGAAGCTAAAGCCGCCGAGGCGGCCGCGGCTCTCAAAG
CCCGAGAAGAGGCGGAAGAGAGAGCGCGACAAGCGACGAAGGTGCTGGAC
GCCGCTAAAGCGGCGGCGGCAGCCATGTCCCGAGCTTCTCCCAAAGCGAC
GACCGCCGTGACGACGGCGCACGCGGCCGCAACTGCCACCGCCGCCGCGT
CCGCGGCGCACACCGTGGCCGCAACGGCGGCGGCTACTGTTGCGGCCACC
GCTGCGCGCGAGCAATCAAAAGTGGAGACGGGCGTCGTCGCACCAGTAGC
GACCGAGGTTGAACCTGGATTTGCACCGCGTTTGGAGCGCGTGGAGTCGG
TTTCCGAGGAAAATGCGGCAGAGGTGCTGGAGGAGCCGGTGTTGGTACCA
GCGGCCGATATCGTGGTCATTGAGGACGATGATACAGCAAGAGAGGTGGC
GGCAGCGGCGGCTGCGGCGACAACAGCACGGGAAGACCGGTTGGAATCCT
ACGAGGTCGTGCCCGCATCACACAAGGACGCCGAGCGAGAGACAGGGTTC
GCGGCGATGGCGGCGGTGGCGGCGCAGCAGCCCAAGGCGGCGAAGGTCGC
GCAGAAGTCGGACGAGGAGCGGGCTGAACGCTCGGAATCAGCGGAAATGT
TGTCGGAACCGGATGACGACGACGAGGAGGAGGAGGAGCACGG
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Coding sequence (CDS) from alignment at H-paniculata_contig4939:12502..13394+

>mRNA_H-paniculata_contig4939.12120.1 ID=mRNA_H-paniculata_contig4939.12120.1|Name=mRNA_H-paniculata_contig4939.12120.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1782bp|location=Sequence derived from alignment at H-paniculata_contig4939:12502..13394+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGAGGATCAGCGTCTCTTCTCCTGTCGTTCCCCGTCCGGGCGTGGCAGA
TAAGGCGAAAGCTGTAGCGGAGGCAGACGGCGGCGTCGGTGAGGAGGACG
TAATTCAAAACGCATTGAAAGCGGCCCCAAAATGGCAGCGCGAGACGACC
GAGGTTGGAAGGGCGCCGGCCGATGCCTCCACCGCTGCCGTCATTCGCGC
ACAACGAGCGGCGGAAGCTAAAGCCGCCGAGGCGGCCGCGGCTCTCAAAG
CCCGAGAAGAGGCGGAAGAGAGAGCGCGACAAGCGACGAAGGTGCTGGAC
GCCGCTAAAGCGGCGGCGGCAGCCATGTCCCGAGCTTCTCCCAAAGCGAC
GACCGCCGTGACGACGGCGCACGCGGCCGCAACTGCCACCGCCGCCGCGT
CCGCGGCGCACACCGTGGCCGCAACGGCGGCGGCTACTGTTGCGGCCACC
GCTGCGCGCGAGCAATCAAAAGTGGAGACGGGCGTCGTCGCACCAGTAGC
GACCGAGGTTGAACCTGGATTTGCACCGCGTTTGGAGCGCGTGGAGTCGG
TTTCCGAGGAAAATGCGGCAGAGGTGCTGGAGGAGCCGGTGTTGGTACCA
GCGGCCGATATCGTGGTCATTGAGGACGATGATACAGCAAGAGAGGTGGC
GGCAGCGGCGGCTGCGGCGACAACAGCACGGGAAGACCGGTTGGAATCCT
ACGAGGTCGTGCCCGCATCACACAAGGACGCCGAGCGAGAGACAGGGTTC
GCGGCGATGGCGGCGGTGGCGGCGCAGCAGCCCAAGGCGGCGAAGGTCGC
GCAGAAGTCGGACGAGGAGCGGGCTGAACGCTCGGAATCAGCGGAAATGT
TGTCGGAACCGGATGACGACGACGAGGAGGAGGAGGAGCACGGGAGGATC
AGCGTCTCTTCTCCTGTCGTTCCCCGTCCGGGCGTGGCAGATAAGGCGAA
AGCTGTAGCGGAGGCAGACGGCGGCGTCGGTGAGGAGGACGTAATTCAAA
ACGCATTGAAAGCGGCCCCAAAATGGCAGCGCGAGACGACCGAGGTTGGA
AGGGCGCCGGCCGATGCCTCCACCGCTGCCGTCATTCGCGCACAACGAGC
GGCGGAAGCTAAAGCCGCCGAGGCGGCCGCGGCTCTCAAAGCCCGAGAAG
AGGCGGAAGAGAGAGCGCGACAAGCGACGAAGGTGCTGGACGCCGCTAAA
GCGGCGGCGGCAGCCATGTCCCGAGCTTCTCCCAAAGCGACGACCGCCGT
GACGACGGCGCACGCGGCCGCAACTGCCACCGCCGCCGCGTCCGCGGCGC
ACACCGTGGCCGCAACGGCGGCGGCTACTGTTGCGGCCACCGCTGCGCGC
GAGCAATCAAAAGTGGAGACGGGCGTCGTCGCACCAGTAGCGACCGAGGT
TGAACCTGGATTTGCACCGCGTTTGGAGCGCGTGGAGTCGGTTTCCGAGG
AAAATGCGGCAGAGGTGCTGGAGGAGCCGGTGTTGGTACCAGCGGCCGAT
ATCGTGGTCATTGAGGACGATGATACAGCAAGAGAGGTGGCGGCAGCGGC
GGCTGCGGCGACAACAGCACGGGAAGACCGGTTGGAATCCTACGAGGTCG
TGCCCGCATCACACAAGGACGCCGAGCGAGAGACAGGGTTCGCGGCGATG
GCGGCGGTGGCGGCGCAGCAGCCCAAGGCGGCGAAGGTCGCGCAGAAGTC
GGACGAGGAGCGGGCTGAACGCTCGGAATCAGCGGAAATGTTGTCGGAAC
CGGATGACGACGACGAGGAGGAGGAGGAGCAC
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