mRNA_H-paniculata_contig49156.12088.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig49156.12088.1
Unique NamemRNA_H-paniculata_contig49156.12088.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig49156.12088.1 vs. uniprot
Match: A0A7D9D5L2_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9D5L2_PARCT)

HSP 1 Score: 132 bits (333), Expect = 6.380e-35
Identity = 65/161 (40.37%), Postives = 100/161 (62.11%), Query Frame = 1
Query:    1 MTISQGSYIREVLKHYGFYECREVPTPVE-GKVKISAPESADKPSEPNGIPTEYRGTVGSLMYASTGSRPDIAYAVHQAARRMQDPCREDFSTCKRIFRYLSTVPDFGITFGGKSSGHGLEGIVDADWAKHVEDRKSTTGYVFKLNGGAIIWCSRKQQLVT 480
            MTISQ +Y++ +LK +G  +C+ V TP+E GK     P+  + P+  N    EY+  +G L Y +T +RPD+A AV   ++ M  P +E +   KR+ RY+    ++G+ F GKS+   L G  DADWA  ++ R+ST+GYVF++NG  + WCS++Q  VT
Sbjct:   38 MTISQSTYLQGILKRFGMEQCKPVSTPLEPGKHFQELPDD-ENPTNTN----EYQKLIGCLTYVTTATRPDLASAVGILSKFMSKPSKEHWHGAKRVLRYIKDTVNYGLVFEGKSTKCSLIGYSDADWANDLDTRRSTSGYVFQINGSTVSWCSKRQPCVT 193          
BLAST of mRNA_H-paniculata_contig49156.12088.1 vs. uniprot
Match: A0A060SU91_PYCCI (Uncharacterized protein n=2 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SU91_PYCCI)

HSP 1 Score: 132 bits (331), Expect = 7.340e-35
Identity = 71/164 (43.29%), Postives = 94/164 (57.32%), Query Frame = 1
Query:    1 MTISQGSYIREVLKHYGFYECREVPTPVEGKVKISAPESADKPSEPNGIPTEYRGTVGSLMYASTGSRPDIAYAVHQAARRMQDPCREDFSTCKRIFRYLSTVPDFGITFGGKSSG---HGLE--GIVDADWAKHVEDRKSTTGYVFKLNGGAIIWCSRKQQLV 477
            ++ISQ  Y+  +LK +G  +CR V TP+E   K+      DK +E    P  Y+  +G+LMYA  GSRPDIA+AV   ++    P  E ++   R+FRYL       +T+G        HGL   G  DADWA    DR+ST+ YVFKL GGAI WCSRKQQ +
Sbjct:    8 LSISQEQYVETILKRHGMSDCRPVSTPMEANFKL------DKLAEAEIDPKPYQSALGALMYAMLGSRPDIAFAVGTLSKHASTPGTEHWNALMRVFRYLRGTSGLRLTYGKDLKPLCEHGLTVVGYSDADWAGDRNDRRSTSAYVFKLGGGAISWCSRKQQSI 165          
BLAST of mRNA_H-paniculata_contig49156.12088.1 vs. uniprot
Match: A0A443S3D3_9ACAR (Integrase core domain protein-like protein (Fragment) n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443S3D3_9ACAR)

HSP 1 Score: 132 bits (331), Expect = 3.060e-33
Identity = 67/159 (42.14%), Postives = 95/159 (59.75%), Query Frame = 1
Query:    1 MTISQGSYIREVLKHYGFYECREVPTPVEGKVKISAPESADKPSEPNGIPTEYRGTVGSLMYASTGSRPDIAYAVHQAARRMQDPCREDFSTCKRIFRYLSTVPDFGITFGGKSSGHGLEGIVDADWAKHVEDRKSTTGYVFKLNGGAIIWCSRKQQLV 477
            + ++Q SYI+++L  YG  +C+ V TP++  VK++  ES             YR  VGSLMYA  GSRPDI YAV + A+ +       ++  KR+ RYL   P  GITF   SS   L G  DAD+A  ++ R+ST+GY+F L+GGA+ W SR Q++V
Sbjct:  350 LNVNQESYIQKMLNKYGMTDCKSVKTPMDATVKLTKSESKS-------CEFSYRELVGSLMYAMLGSRPDICYAVGKLAQFLDCYDETHWTAAKRVLRYLKGTPKHGITFNANSSSPNLYGYCDADYAGDLDSRRSTSGYIFILSGGAVSWMSRVQRIV 501          
BLAST of mRNA_H-paniculata_contig49156.12088.1 vs. uniprot
Match: H3GBA2_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GBA2_PHYRM)

HSP 1 Score: 129 bits (325), Expect = 2.010e-32
Identity = 67/162 (41.36%), Postives = 97/162 (59.88%), Query Frame = 1
Query:    1 MTISQGSYIREVLKHYGFYECREVPTPVEGKVKISAPESADKPSEPNGIPTEYRGTVGSLMYASTGSRPDIAYAVHQAARRMQDPCREDFSTCKRIFRYLSTVPDFGITFGGKSSGHG---LEGIVDADWAKHVEDRKSTTGYVFKLNGGAIIWCSRKQQLV 477
            + ISQG Y RE+L+ +G+ +   V  P+E  V++ AP   D+ SE +     YR  +G LMY +T +RPD+A+ + Q +R + +P  +     KR+ RYL+   D+GIT+  K        LEG  D+DWA   E RKSTTG+VF L GGAI W SR+Q ++
Sbjct:  224 IKISQGKYAREILEKFGYQDAHAVGNPMETNVRL-APLETDEKSETS---FPYREAIGMLMYLATSTRPDLAFTLGQLSRFVANPSAKHVGAVKRVLRYLAGTVDYGITYARKQDEVDEVVLEGYSDSDWANDPEQRKSTTGFVFTLAGGAITWMSRRQSII 381          
BLAST of mRNA_H-paniculata_contig49156.12088.1 vs. uniprot
Match: UPI001C68E234 (secreted RxLR effector protein 161-like n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI001C68E234)

HSP 1 Score: 120 bits (301), Expect = 1.190e-31
Identity = 64/161 (39.75%), Postives = 94/161 (58.39%), Query Frame = 1
Query:    7 ISQGSYIREVLKHYGFYECREVPTPVEGKVKISAPESADKPSEPNGIPT---EYRGTVGSLMYASTGSRPDIAYAVHQAARRMQDPCREDFSTCKRIFRYLSTVPDFGITFGGKSSGHGLEGIVDADWAKHVEDRKSTTGYVFKLNGGAIIWCSRKQQLVT 480
            ++Q  YI ++LK + F EC  V TP++  VK+        P+  NGIP    EY   +GSLMYA T ++PDIA+ V + +R   +P  + +    R+F+YL    ++G+ + G  S   LEG  DA W  ++ED  ST+G+VF L GGAI W S+KQ  +T
Sbjct:    1 MTQSHYIEKILKRFNFTECSPVSTPMDPGVKLM-------PN--NGIPISQLEYSKAIGSLMYAMTSTKPDIAFVVGKLSRYTSNPSAQHWQAVNRVFKYLKGTMNYGLCYLGSPSV--LEGNSDASWITNMEDHSSTSGWVFLLGGGAISWASKKQSCIT 150          
BLAST of mRNA_H-paniculata_contig49156.12088.1 vs. uniprot
Match: A0A6A3X4P1_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3X4P1_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.670e-31
Identity = 66/163 (40.49%), Postives = 101/163 (61.96%), Query Frame = 1
Query:    1 MTISQGSYIREVLKHYGFYECREVPTPVEGKVKISAPESADKPSEPNGIPTEYRGTVGSLMYASTGSRPDIAYAVHQAARRMQDPCREDFSTCKRIFRYLSTVPDFGITF---GGKSSGHGLEGIVDADWAKHVEDRKSTTGYVFKLNGGAIIWCSRKQQLVT 480
            +TISQ  Y RE+L+ +G+ +   V  P+E  V + AP   D+P++ +  P  YR  +G LMY +T +RPD+A+ + Q  R + +P ++   T KR+ RYL+   ++GI++    G +    LEG  D+DWA   E RKSTTG+VF L GGA+ W SR+Q ++T
Sbjct:  241 ITISQSKYAREILQKFGYSKAHAVGNPMEVNVWL-APLDEDEPTD-SSFP--YREAIGMLMYLATSTRPDLAFGLGQLRRFVANPSKKHVGTSKRVLRYLAGTLEYGISYLRQQGNAYEVVLEGFSDSDWANDPEQRKSTTGFVFTLAGGAVAWMSRRQSIIT 399          
BLAST of mRNA_H-paniculata_contig49156.12088.1 vs. uniprot
Match: A0A6A3PPW4_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3PPW4_9STRA)

HSP 1 Score: 127 bits (318), Expect = 2.970e-31
Identity = 66/162 (40.74%), Postives = 97/162 (59.88%), Query Frame = 1
Query:    1 MTISQGSYIREVLKHYGFYECREVPTPVEGKVKISAPESADKPSEPNGIPTEYRGTVGSLMYASTGSRPDIAYAVHQAARRMQDPCREDFSTCKRIFRYLSTVPDFGITFGGKSSGHG---LEGIVDADWAKHVEDRKSTTGYVFKLNGGAIIWCSRKQQLV 477
            +TI QG Y RE+L  +G+ E   V  P+E   ++ AP   D+ +E +     YR  VG LMY +T +RPD+A+A+ Q +R + +P  +     KR+ RY++   D+GIT+  K +      LEG  D+DWA   E RKSTTG+VF L GGA+ W SR+Q ++
Sbjct:  266 ITIRQGKYAREILAKFGYEEAHAVGNPMEVNARL-APIEEDEKAETS---FPYREAVGMLMYLATSTRPDLAFALGQLSRFVANPLPKHVGALKRVLRYVAGTLDYGITYSRKQTEAKDVVLEGFCDSDWANDPEQRKSTTGFVFTLAGGALAWMSRRQSII 423          
BLAST of mRNA_H-paniculata_contig49156.12088.1 vs. uniprot
Match: A0A6A3ZTI4_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3ZTI4_9STRA)

HSP 1 Score: 124 bits (310), Expect = 5.720e-31
Identity = 65/162 (40.12%), Postives = 95/162 (58.64%), Query Frame = 1
Query:    1 MTISQGSYIREVLKHYGFYECREVPTPVEGKVKISAPESADKPSEPNGIPTEYRGTVGSLMYASTGSRPDIAYAVHQAARRMQDPCREDFSTCKRIFRYLSTVPDFGITFGGKSSGHG---LEGIVDADWAKHVEDRKSTTGYVFKLNGGAIIWCSRKQQLV 477
            + ISQG Y RE+L+ +G+ +   V  P+E  V++ AP   D  SE +     YR  +G LMY +T +RPD+A+ + Q +R + +P  +     K + RYL+   ++GIT+  K        LEG  D+DWA   E RKSTTG+VF L GGAI W SR+Q ++
Sbjct:  103 IKISQGKYAREILEKFGYQDAHAVGNPMETNVRL-APLEKDVKSETS---FPYREAIGMLMYLATSTRPDLAFTLGQISRFVANPSAKHVGAVKGVLRYLAGTVNYGITYARKQDEVDEVVLEGYSDSDWANDPEQRKSTTGFVFSLAGGAIAWMSRRQSII 260          
BLAST of mRNA_H-paniculata_contig49156.12088.1 vs. uniprot
Match: W4VRP9_9DIPT (Putative retrovirus-related pol polyprotein from transposon tnt (Fragment) n=2 Tax=Corethrella appendiculata TaxID=1370023 RepID=W4VRP9_9DIPT)

HSP 1 Score: 127 bits (318), Expect = 7.190e-31
Identity = 61/163 (37.42%), Postives = 99/163 (60.74%), Query Frame = 1
Query:    1 MTISQGSYIREVLKHYGFYECREVPTPVEGKVKIS---APESADKPSEPNGIPTEYRGTVGSLMYASTGSRPDIAYAVHQAARRMQDPCREDFSTCKRIFRYLSTVPDFGITFGGKSSGHGLEGIVDADWAKHVEDRKSTTGYVFKLNGGAIIWCSRKQQLVT 480
            +T+ Q  Y++E+L  +G  +C+ V TP+    K+S    P + ++  E   +P  YR  +G LMY S  +RPDI++AV++ ++   +P  + +   K + RYL     + +T+  +S+  G+ G  DADWA  ++DR+ST+G+VF   GGAI WCSRKQQ V+
Sbjct: 1106 ITLDQEHYVKEILTKFGMADCKPVTTPLNVSEKLSKADCPNTPEEIREMQNVP--YREVIGCLMYLSQCTRPDISFAVNKLSQFNSNPGMKHWLAAKHLLRYLQGTSSYKLTYHRESNMDGIVGYCDADWAADIDDRRSTSGFVFMSQGGAISWCSRKQQTVS 1266          
BLAST of mRNA_H-paniculata_contig49156.12088.1 vs. uniprot
Match: A0A6A3DIP5_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3DIP5_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.090e-30
Identity = 64/162 (39.51%), Postives = 92/162 (56.79%), Query Frame = 1
Query:    1 MTISQGSYIREVLKHYGFYECREVPTPVEGKVKISAPESADKPSEPNGIPTEYRGTVGSLMYASTGSRPDIAYAVHQAARRMQDPCREDFSTCKRIFRYLSTVPDFGITFGGKSSGHG---LEGIVDADWAKHVEDRKSTTGYVFKLNGGAIIWCSRKQQLV 477
            +TI Q  Y RE+L+ +G+     V  P+E  V++  P   D+ S+ +     YR  +G LMY +TG+RPD+A+AV Q +R +  P  +     KR+ RYL+   +FGIT+           L+G  D+DWA     RKSTTG VF L GGA+ W SR+Q +V
Sbjct:   54 VTIRQSKYAREILETFGYLNAHAVGNPMETNVRL-VPLGEDEESDTS---FSYRQAIGMLMYLATGTRPDLAFAVGQLSRFVSKPSAKHVGAVKRVLRYLAGTVNFGITYNRAKEMPTKIILDGYCDSDWANDPSSRKSTTGLVFTLAGGAVSWMSRRQTIV 211          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig49156.12088.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7D9D5L2_PARCT6.380e-3540.37Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
A0A060SU91_PYCCI7.340e-3543.29Uncharacterized protein n=2 Tax=Pycnoporus cinnaba... [more]
A0A443S3D3_9ACAR3.060e-3342.14Integrase core domain protein-like protein (Fragme... [more]
H3GBA2_PHYRM2.010e-3241.36Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI001C68E2341.190e-3139.75secreted RxLR effector protein 161-like n=1 Tax=La... [more]
A0A6A3X4P1_9STRA1.670e-3140.49Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3PPW4_9STRA2.970e-3140.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3ZTI4_9STRA5.720e-3140.12Reverse transcriptase Ty1/copia-type domain-contai... [more]
W4VRP9_9DIPT7.190e-3137.42Putative retrovirus-related pol polyprotein from t... [more]
A0A6A3DIP5_9STRA1.090e-3039.51Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig49156contigH-paniculata_contig49156:78..620 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.0
Seed ortholog evalue1.9e-27
Seed eggNOG ortholog67593.Physo109406
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QHRW@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size480
Cds size480
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930453.338303-CDS-H-paniculata_contig49156:77..4171622930453.338303-CDS-H-paniculata_contig49156:77..417Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49156 78..417 -
1691481298.4981246-CDS-H-paniculata_contig49156:77..4171691481298.4981246-CDS-H-paniculata_contig49156:77..417Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49156 78..417 -
1622930453.3570335-CDS-H-paniculata_contig49156:480..6201622930453.3570335-CDS-H-paniculata_contig49156:480..620Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49156 481..620 -
1691481298.5118551-CDS-H-paniculata_contig49156:480..6201691481298.5118551-CDS-H-paniculata_contig49156:480..620Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49156 481..620 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig49156.12088.1prot_H-paniculata_contig49156.12088.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig49156 78..620 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig49156.12088.1

>prot_H-paniculata_contig49156.12088.1 ID=prot_H-paniculata_contig49156.12088.1|Name=mRNA_H-paniculata_contig49156.12088.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=160bp
MTISQGSYIREVLKHYGFYECREVPTPVEGKVKISAPESADKPSEPNGIP
TEYRGTVGSLMYASTGSRPDIAYAVHQAARRMQDPCREDFSTCKRIFRYL
STVPDFGITFGGKSSGHGLEGIVDADWAKHVEDRKSTTGYVFKLNGGAII
WCSRKQQLVT
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mRNA from alignment at H-paniculata_contig49156:78..620-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig49156.12088.1 ID=mRNA_H-paniculata_contig49156.12088.1|Name=mRNA_H-paniculata_contig49156.12088.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=543bp|location=Sequence derived from alignment at H-paniculata_contig49156:78..620- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCATCTCGCAGGGTAGCTACATCCGCGAGGTGCTAAAACATTACGG TTTTTACGAGTGTCGAGAAGTACCCACCCCTGTAGAGGGAAAAGTGAAGA TTTCGGCACCCGAGTCGGCCGACAAGCCCTCCGAACCCAAGTCACTTGGA GCTGTACCTTCGAACACAGGCGCAGGAGTACAAAAACTCAGCACACGGAG AAGTGGCATTCCAACTGAATACAGAGGCACGGTAGGATCACTCATGTATG CCTCGACAGGAAGTAGACCTGATATAGCATACGCGGTACACCAAGCAGCA CGTCGTATGCAGGACCCATGTCGAGAAGACTTCAGTACATGCAAGCGCAT ATTTCGTTATCTCAGTACTGTGCCTGACTTCGGCATTACGTTCGGCGGTA AGAGTAGTGGTCACGGTCTGGAAGGAATCGTTGATGCCGATTGGGCGAAA CATGTCGAGGACCGAAAGTCCACAACAGGATACGTTTTCAAGCTGAACGG TGGTGCAATAATCTGGTGCTCTAGGAAGCAACAGTTAGTCACG
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Coding sequence (CDS) from alignment at H-paniculata_contig49156:78..620-

>mRNA_H-paniculata_contig49156.12088.1 ID=mRNA_H-paniculata_contig49156.12088.1|Name=mRNA_H-paniculata_contig49156.12088.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=960bp|location=Sequence derived from alignment at H-paniculata_contig49156:78..620- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCATCTCGCAGGGTAGCTACATCCGCGAGGTGCTAAAACATTACGG
TTTTTACGAGTGTCGAGAAGTACCCACCCCTGTAGAGGGAAAAGTGAAGA
TTTCGGCACCCGAGTCGGCCGACAAGCCCTCCGAACCCAAATGACCATCT
CGCAGGGTAGCTACATCCGCGAGGTGCTAAAACATTACGGTTTTTACGAG
TGTCGAGAAGTACCCACCCCTGTAGAGGGAAAAGTGAAGATTTCGGCACC
CGAGTCGGCCGACAAGCCCTCCGAACCCAATGGCATTCCAACTGAATACA
GAGGCACGGTAGGATCACTCATGTATGCCTCGACAGGAAGTAGACCTGAT
ATAGCATACGCGGTACACCAAGCAGCACGTCGTATGCAGGACCCATGTCG
AGAAGACTTCAGTACATGCAAGCGCATATTTCGTTATCTCAGTACTGTGC
CTGACTTCGGCATTACGTTCGGCGGTAAGAGTAGTGGTCACGGTCTGGAA
GGAATCGTTGATGCCGATTGGGCGAAACATGTCGAGGACCGAAAGTCCAC
AACAGGATACGTTTTCAAGCTGAACGGTGGTGCAATAATCTGGTGCTCTA
GGAAGCAACAGTTAGTCACGTGGCATTCCAACTGAATACAGAGGCACGGT
AGGATCACTCATGTATGCCTCGACAGGAAGTAGACCTGATATAGCATACG
CGGTACACCAAGCAGCACGTCGTATGCAGGACCCATGTCGAGAAGACTTC
AGTACATGCAAGCGCATATTTCGTTATCTCAGTACTGTGCCTGACTTCGG
CATTACGTTCGGCGGTAAGAGTAGTGGTCACGGTCTGGAAGGAATCGTTG
ATGCCGATTGGGCGAAACATGTCGAGGACCGAAAGTCCACAACAGGATAC
GTTTTCAAGCTGAACGGTGGTGCAATAATCTGGTGCTCTAGGAAGCAACA
GTTAGTCACG
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