mRNA_H-paniculata_contig4910.12081.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4910.12081.1
Unique NamemRNA_H-paniculata_contig4910.12081.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4910.12081.1 vs. uniprot
Match: A0A6H5J7D4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7D4_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 2.540e-17
Identity = 46/56 (82.14%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:   16 MVAPVRETAAQLLAVAALQLPPARLRQAATLLCELTIAEEWQARHGGFCGLESLCA 183
            MVAPVRETAAQLLAVAALQL   +LRQAA LL ELT + EWQARHGGFC LESLCA
Sbjct:    1 MVAPVRETAAQLLAVAALQLEADKLRQAARLLFELTASGEWQARHGGFCSLESLCA 56
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BLAST of mRNA_H-paniculata_contig4910.12081.1 vs. uniprot
Match: D8LBB5_ECTSI (Essential abundant protein involved in regulation of transcription n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBB5_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 2.600e-17
Identity = 46/56 (82.14%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:   16 MVAPVRETAAQLLAVAALQLPPARLRQAATLLCELTIAEEWQARHGGFCGLESLCA 183
            MVAPVRETAAQLLAVAALQL   +LRQAA LL ELT + EWQARHGGFC LESLCA
Sbjct:  402 MVAPVRETAAQLLAVAALQLEADKLRQAARLLFELTASGEWQARHGGFCSLESLCA 457
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4910.12081.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J7D4_9PHAE2.540e-1782.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBB5_ECTSI2.600e-1782.14Essential abundant protein involved in regulation ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4910contigH-paniculata_contig4910:14269..14451 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue9.5e-14
Seed eggNOG ortholog2880.D8LBB5
KEGG koko:K15192
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.helicase activity
EggNOG OGsKOG0392@1,KOG0392@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021
Exons1
Model size183
Cds size168
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930452.5650074-CDS-H-paniculata_contig4910:14268..144361622930452.5650074-CDS-H-paniculata_contig4910:14268..14436Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4910 14269..14436 -
1691481298.090633-CDS-H-paniculata_contig4910:14268..144361691481298.090633-CDS-H-paniculata_contig4910:14268..14436Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4910 14269..14436 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930452.5795488-UTR-H-paniculata_contig4910:14436..144511622930452.5795488-UTR-H-paniculata_contig4910:14436..14451Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4910 14437..14451 -
1691481298.104651-UTR-H-paniculata_contig4910:14436..144511691481298.104651-UTR-H-paniculata_contig4910:14436..14451Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4910 14437..14451 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4910.12081.1prot_H-paniculata_contig4910.12081.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4910 14269..14436 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4910.12081.1

>prot_H-paniculata_contig4910.12081.1 ID=prot_H-paniculata_contig4910.12081.1|Name=mRNA_H-paniculata_contig4910.12081.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=56bp
MVAPVRETAAQLLAVAALQLPPARLRQAATLLCELTIAEEWQARHGGFCG
LESLCA
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mRNA from alignment at H-paniculata_contig4910:14269..14451-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4910.12081.1 ID=mRNA_H-paniculata_contig4910.12081.1|Name=mRNA_H-paniculata_contig4910.12081.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=183bp|location=Sequence derived from alignment at H-paniculata_contig4910:14269..14451- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTTCAACGCTAAGCATGGTCGCCCCGGTCCGAGAGACGGCTGCGCAGCT
GCTAGCCGTAGCGGCGCTCCAACTACCCCCGGCCAGGCTTAGGCAGGCTG
CCACCCTTTTGTGCGAACTGACCATCGCCGAAGAGTGGCAGGCAAGGCAT
GGCGGCTTTTGTGGTCTAGAGTCTCTCTGTGCT
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Coding sequence (CDS) from alignment at H-paniculata_contig4910:14269..14451-

>mRNA_H-paniculata_contig4910.12081.1 ID=mRNA_H-paniculata_contig4910.12081.1|Name=mRNA_H-paniculata_contig4910.12081.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at H-paniculata_contig4910:14269..14451- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCGCCCCGGTCCGAGAGACGGCTGCGCAGCTGCTAGCCGTAGCGGC
GCTCCAACTACCCCCGGCCAGGCTTAGGCAGGCTGCCACCCTTTTGTGCG
AACTGACCATCGCCGAAGAGTGGCAGGCAAGGCATGGCGGCTTTTGTGGT
CTAGAGTCTCTCTGTGCTATGGTCGCCCCGGTCCGAGAGACGGCTGCGCA
GCTGCTAGCCGTAGCGGCGCTCCAACTACCCCCGGCCAGGCTTAGGCAGG
CTGCCACCCTTTTGTGCGAACTGACCATCGCCGAAGAGTGGCAGGCAAGG
CATGGCGGCTTTTGTGGTCTAGAGTCTCTCTGTGCT
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