mRNA_H-paniculata_contig4906.12071.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4906.12071.1
Unique NamemRNA_H-paniculata_contig4906.12071.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4906.12071.1 vs. uniprot
Match: D7FGX3_ECTSI (Lipoyl-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGX3_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 5.330e-33
Identity = 62/93 (66.67%), Postives = 77/93 (82.80%), Query Frame = 1
Query:    1 KEPRHSHVLMPNITD-EDFAALTSWSVSVGDSVKVGDVVCEIELEQFSVGVKVETSGYIAKILVKAGGEKIPVGASLATVVHSEEDIAVYLQA 276
            +EPRH+H+ MP IT+ E  A LTSW V VGD ++VGDVVCEIELEQFSVGVKVET G++A+ILV+AG E +PVG  + T+VHSEE+IA+Y QA
Sbjct:  177 EEPRHAHIEMPTITEAERVATLTSWKVQVGDVIEVGDVVCEIELEQFSVGVKVETPGFLAEILVEAGTEGVPVGTDIGTIVHSEEEIALYQQA 269          
BLAST of mRNA_H-paniculata_contig4906.12071.1 vs. uniprot
Match: A0A4D9CXA7_9STRA (Lipoyl-binding domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CXA7_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.250e-14
Identity = 36/84 (42.86%), Postives = 56/84 (66.67%), Query Frame = 1
Query:    4 EPRHSHVLMPNITDEDFAA-LTSWSVSVGDSVKVGDVVCEIELEQFSVGVKVETSGYIAKILVKAGGEKIPVGASLATVVHSEE 252
            +P H  +++P+I        LT W  + GD +K GDVVCE+E++QF+VG++V+  GY+A+ILV AG   +P G +LA  V+ E+
Sbjct:   73 DPPHFKLILPDIGQTSKTGNLTRWRKAEGDVIKNGDVVCEVEMDQFNVGMEVDDKGYLARILVPAGTRGVPAGEALAVFVYEEQ 156          
BLAST of mRNA_H-paniculata_contig4906.12071.1 vs. uniprot
Match: A0A2R5G449_9STRA (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G449_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 5.220e-10
Identity = 32/88 (36.36%), Postives = 52/88 (59.09%), Query Frame = 1
Query:    7 PRHSHVLMPNITDE-DFAALTSWSVSVGDSVKVGDVVCEIELEQFSVGVKVETSGYIAKILVKAGGEKIPVGASLATVVHSEEDIAVY 267
            P H+ + +P ++       + SW    GD V+ G  VCEIE ++ +V  +V+  GY+A+ILV+AGG   PVG  +  +V  +ED+A +
Sbjct:   55 PSHTKLTLPALSPTMSEGVIASWLRKEGDFVEAGQPVCEIETDKATVDFEVQDDGYLARILVEAGGPAQPVGEVIGVLVEDKEDVAAF 142          
BLAST of mRNA_H-paniculata_contig4906.12071.1 vs. uniprot
Match: A0A4P9ZGI4_9ASCO (Acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Metschnikowia bicuspidata TaxID=27322 RepID=A0A4P9ZGI4_9ASCO)

HSP 1 Score: 63.2 bits (152), Expect = 1.320e-9
Identity = 29/90 (32.22%), Postives = 53/90 (58.89%), Query Frame = 1
Query:    1 KEPRHSHVLMPNITDEDFAA-LTSWSVSVGDSVKVGDVVCEIELEQFSVGVKVETSGYIAKILVKAGGEKIPVGASLATVVHSEEDIAVY 267
            K P H+ + MP ++       + SWS SVGD +  G+ + E+E ++ ++  + +  GY+AKIL+ AG + +PVG  +A  V   +D++ +
Sbjct:   34 KFPSHTVIKMPALSPTMTQGNIASWSKSVGDELSPGEAIAEVETDKATMDFEFQEEGYLAKILIDAGAQDVPVGKPIAVYVEDADDVSAF 123          
BLAST of mRNA_H-paniculata_contig4906.12071.1 vs. uniprot
Match: A0A2H0ZGE3_CANAR (Acetyltransferase component of pyruvate dehydrogenase complex n=6 Tax=Candida auris TaxID=498019 RepID=A0A2H0ZGE3_CANAR)

HSP 1 Score: 62.8 bits (151), Expect = 1.810e-9
Identity = 31/90 (34.44%), Postives = 53/90 (58.89%), Query Frame = 1
Query:    1 KEPRHSHVLMPNITDE-DFAALTSWSVSVGDSVKVGDVVCEIELEQFSVGVKVETSGYIAKILVKAGGEKIPVGASLATVVHSEEDIAVY 267
            K P H+ + MP ++       + SWS +VGD +  G+ + EIE ++ S+  + +  GY+AKILV+AG + +PVG  +A  V   +D+  +
Sbjct:   47 KFPDHTVIHMPALSPTMTQGGIMSWSKNVGDQLSPGEPIAEIETDKASMDFEFQEEGYLAKILVEAGAQDVPVGKPIAVYVEEADDVPAF 136          
BLAST of mRNA_H-paniculata_contig4906.12071.1 vs. uniprot
Match: UPI0014023C64 (dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial n=1 Tax=Amblyraja radiata TaxID=386614 RepID=UPI0014023C64)

HSP 1 Score: 62.8 bits (151), Expect = 1.850e-9
Identity = 29/88 (32.95%), Postives = 49/88 (55.68%), Query Frame = 1
Query:    7 PRHSHVLMPNITDE-DFAALTSWSVSVGDSVKVGDVVCEIELEQFSVGVKVETSGYIAKILVKAGGEKIPVGASLATVVHSEEDIAVY 267
            P H  + +P ++       +  W   VG+ ++ GD++ EIE ++ ++G +V   GY+AKILV  G   IP+G +L  +V  E DI  +
Sbjct:  205 PSHMKIALPALSPTMTVGTIQRWEKKVGEKLREGDLIAEIETDKATIGFEVMEEGYLAKILVAEGSRDIPLGTTLCIIVEKESDIPAF 292          
BLAST of mRNA_H-paniculata_contig4906.12071.1 vs. uniprot
Match: UPI001B7F5E08 (dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial n=1 Tax=Carcharodon carcharias TaxID=13397 RepID=UPI001B7F5E08)

HSP 1 Score: 62.8 bits (151), Expect = 1.850e-9
Identity = 28/88 (31.82%), Postives = 50/88 (56.82%), Query Frame = 1
Query:    7 PRHSHVLMPNITDE-DFAALTSWSVSVGDSVKVGDVVCEIELEQFSVGVKVETSGYIAKILVKAGGEKIPVGASLATVVHSEEDIAVY 267
            P H  +++P ++       +  W   VG+ ++ GD++ EIE ++ ++G +V   GY+AKIL+  G   +P+G SL  +V  E DI  +
Sbjct:  215 PSHMKIVLPALSPTMTVGTVQRWEKKVGEKLREGDLIAEIETDKATIGFEVMEEGYLAKILIAEGTRDVPLGTSLCIIVEKESDIPAF 302          
BLAST of mRNA_H-paniculata_contig4906.12071.1 vs. uniprot
Match: A0A401PCJ6_SCYTO (Acetyltransferase component of pyruvate dehydrogenase complex (Fragment) n=2 Tax=Scyliorhinus TaxID=7829 RepID=A0A401PCJ6_SCYTO)

HSP 1 Score: 62.4 bits (150), Expect = 2.530e-9
Identity = 28/88 (31.82%), Postives = 50/88 (56.82%), Query Frame = 1
Query:    7 PRHSHVLMPNITDE-DFAALTSWSVSVGDSVKVGDVVCEIELEQFSVGVKVETSGYIAKILVKAGGEKIPVGASLATVVHSEEDIAVY 267
            P H  +++P ++       +  W   VG+ ++ GD++ EIE ++ ++G +V   GY+AKIL+  G   +P+G SL  +V  E DI  +
Sbjct:  233 PPHMKIVLPALSPTMTVGTVQRWEKKVGEKLREGDLIAEIETDKATIGFEVMEEGYLAKILIAEGTRDVPLGTSLCIIVEKESDIPAF 320          
BLAST of mRNA_H-paniculata_contig4906.12071.1 vs. uniprot
Match: A0A512U655_9ASCO (Acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Metschnikowia sp. JCM 33374 TaxID=2562755 RepID=A0A512U655_9ASCO)

HSP 1 Score: 62.0 bits (149), Expect = 3.370e-9
Identity = 32/88 (36.36%), Postives = 50/88 (56.82%), Query Frame = 1
Query:    7 PRHSHVLMPNITDE-DFAALTSWSVSVGDSVKVGDVVCEIELEQFSVGVKVETSGYIAKILVKAGGEKIPVGASLATVVHSEEDIAVY 267
            P H  + MP ++       + SWS SVGD +  G+ + EIE ++ S+  + +  GY+AKILV AG + IPVG  +A  V  + D+  +
Sbjct:   43 PSHVVIKMPALSPTMTQGGIASWSKSVGDELAPGEPIAEIETDKASMDFEFQEEGYLAKILVDAGAQDIPVGQPIAVYVEDKGDVGAF 130          
BLAST of mRNA_H-paniculata_contig4906.12071.1 vs. uniprot
Match: A0A2P7YM67_9ASCO (Acetyltransferase component of pyruvate dehydrogenase complex n=3 Tax=Metschnikowiaceae incertae sedis TaxID=2937349 RepID=A0A2P7YM67_9ASCO)

HSP 1 Score: 62.0 bits (149), Expect = 3.370e-9
Identity = 32/90 (35.56%), Postives = 51/90 (56.67%), Query Frame = 1
Query:    1 KEPRHSHVLMPNITDE-DFAALTSWSVSVGDSVKVGDVVCEIELEQFSVGVKVETSGYIAKILVKAGGEKIPVGASLATVVHSEEDIAVY 267
            K P H+ + MP ++       + SWS  VGD +  G+ + EIE ++ S+  + +  GY+AKILV AG + +PVG  +A  V    D+A +
Sbjct:   45 KFPDHTVIHMPALSPTMTQGGIMSWSKQVGDELAPGEPIAEIETDKASMDFEFQEEGYLAKILVDAGAQDVPVGKPIAVYVEESGDVAAF 134          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4906.12071.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FGX3_ECTSI5.330e-3366.67Lipoyl-binding domain-containing protein n=1 Tax=E... [more]
A0A4D9CXA7_9STRA1.250e-1442.86Lipoyl-binding domain-containing protein n=2 Tax=M... [more]
A0A2R5G449_9STRA5.220e-1036.36Dihydrolipoamide acetyltransferase component of py... [more]
A0A4P9ZGI4_9ASCO1.320e-932.22Acetyltransferase component of pyruvate dehydrogen... [more]
A0A2H0ZGE3_CANAR1.810e-934.44Acetyltransferase component of pyruvate dehydrogen... [more]
UPI0014023C641.850e-932.95dihydrolipoyllysine-residue acetyltransferase comp... [more]
UPI001B7F5E081.850e-931.82dihydrolipoyllysine-residue acetyltransferase comp... [more]
A0A401PCJ6_SCYTO2.530e-931.82Acetyltransferase component of pyruvate dehydrogen... [more]
A0A512U655_9ASCO3.370e-936.36Acetyltransferase component of pyruvate dehydrogen... [more]
A0A2P7YM67_9ASCO3.370e-935.56Acetyltransferase component of pyruvate dehydrogen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4906contigH-paniculata_contig4906:13334..14664 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.9
Seed ortholog evalue2.8e-22
Seed eggNOG ortholog2880.D7FGX3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.dihydrolipoyllysine-residue acetyltransferase activity
EggNOG OGsCOG0508@1,KOG0557@2759
Ec32 ortholog descriptionSingle hybrid motif
Ec32 orthologEc-11_000970.1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size276
Cds size249
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4906.12071.1prot_H-paniculata_contig4906.12071.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4906 13361..14664 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930451.5330665-UTR-H-paniculata_contig4906:13333..133601622930451.5330665-UTR-H-paniculata_contig4906:13333..13360Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4906 13334..13360 +
1691481297.6316724-UTR-H-paniculata_contig4906:13333..133601691481297.6316724-UTR-H-paniculata_contig4906:13333..13360Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4906 13334..13360 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930451.57297-CDS-H-paniculata_contig4906:13360..133781622930451.57297-CDS-H-paniculata_contig4906:13360..13378Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4906 13361..13378 +
1691481297.6455011-CDS-H-paniculata_contig4906:13360..133781691481297.6455011-CDS-H-paniculata_contig4906:13360..13378Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4906 13361..13378 +
1622930451.6021712-CDS-H-paniculata_contig4906:13637..136911622930451.6021712-CDS-H-paniculata_contig4906:13637..13691Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4906 13638..13691 +
1691481297.6566074-CDS-H-paniculata_contig4906:13637..136911691481297.6566074-CDS-H-paniculata_contig4906:13637..13691Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4906 13638..13691 +
1622930451.6211393-CDS-H-paniculata_contig4906:14169..142541622930451.6211393-CDS-H-paniculata_contig4906:14169..14254Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4906 14170..14254 +
1691481297.6672866-CDS-H-paniculata_contig4906:14169..142541691481297.6672866-CDS-H-paniculata_contig4906:14169..14254Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4906 14170..14254 +
1622930451.6401377-CDS-H-paniculata_contig4906:14572..146641622930451.6401377-CDS-H-paniculata_contig4906:14572..14664Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4906 14573..14664 +
1691481297.6780465-CDS-H-paniculata_contig4906:14572..146641691481297.6780465-CDS-H-paniculata_contig4906:14572..14664Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4906 14573..14664 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4906.12071.1

>prot_H-paniculata_contig4906.12071.1 ID=prot_H-paniculata_contig4906.12071.1|Name=mRNA_H-paniculata_contig4906.12071.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=83bp
MPNITDEDFAALTSWSVSVGDSVKVGDVVCEIELEQFSVGVKVETSGYIA
KILVKAGGEKIPVGASLATVVHSEEDIAVYLQA
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mRNA from alignment at H-paniculata_contig4906:13334..14664+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4906.12071.1 ID=mRNA_H-paniculata_contig4906.12071.1|Name=mRNA_H-paniculata_contig4906.12071.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1331bp|location=Sequence derived from alignment at H-paniculata_contig4906:13334..14664+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGAACCTAGACACTCTCACGTTCTGATGCCGAACATTACAGATGTAAG ATTTGCCTTCGACGATGTGTGCTTGCTTCCCAGAGTATGTGTCACACTCC AGGAAGTACGGTGTGCTCTTTTTGCCGCTCGATGCCATCGCCTACGCTCC ATTCCTTTTCGAGTACAATTTATTTGATGCCTAGTACCCTCGTTGTATTA ATGGTGTTGCGGATTTTGCCGCTCCAAAGTGGCTAACGTGTTTCTACATA CCATACAAGTTGCAAGATCGCCAACCAGCGTCCGTATTTTTTCTTCATCG GCAGGAGGATTTTGCCGCTTTAACCAGCTGGAGTGTCAGTGTGGGCGACT CTGTCAAGGTAACCATGTTATTCAGTTTTTACGTGTTCAACGTTCGTCTG CGCTGCATCATGTCTATTGCGCTCACATCAAGGTGGGCTTCCGCCGTTGT ACGAAGTCGTGACTTGATGGCAATTCAGCGTTCGGTTTACAGCAATTAGA AGCTGCAAAACTATCCACTTCGACACATCGACGGAAGAATGAAAAGGACT GTCTCTTGTTGTTCCTAGCTAGATGTTACACAAAATACAGAAGTCCCAAG TGACAAGTGTTGTCCGGCTGGTTGCGCTCACTCAAGTAACCCCATTCTTG GCAATACAATTAGTTGATGTTTATATGCCGTTGACTGTTTGTCGAACCAT TATAGGCCGTTTTCTGCACGCGAGGATGGGGTCATGCCTTGCGGCTTTAG GTCTGTACCAGCAGGTGTTGTTCATTTTCCCCCAGCTACCGCCTGAAGCA GTCATATCCTGTTGCTCGCACCTTGCTAATTCATAGGTTGGCGATGTGGT GTGCGAGATAGAACTGGAGCAGTTCTCGGTGGGAGTCAAGGTGGAGACAT CAGGCTACATCGCTAAAATATGTGAGTGTTTGCGGTGACAACGCGGCAAA CCACTAGCTGTGGTTTTTGGCCGCTTGTTTGCTCACGCGCTTCGGTCATC GGGTAGTTACGTCATTTTCCAGAATAATATTTACCGACAGAGATCCCTAG GTACAAGCAACACTCGTCGCTGGCCCTTTGATTGTCAGGTAAATACTTTT GTATCGCGTTGAAACACCTGCGGCGTTTTTCGATGTTAGGTGATCAGAGA GAGTGCGGTGACACTCCAAGTGGTGGTGCTGACCCTCCCTGTTCAACTCC TATTCACGCTGTTCTTTATGTGCGTCTCCCCTTGAGCAGTAGTAAAGGCT GGTGGCGAGAAGATCCCCGTTGGTGCATCATTGGCAACTGTGGTCCATTC CGAGGAAGACATCGCCGTGTACTTACAAGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig4906:13334..14664+

>mRNA_H-paniculata_contig4906.12071.1 ID=mRNA_H-paniculata_contig4906.12071.1|Name=mRNA_H-paniculata_contig4906.12071.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at H-paniculata_contig4906:13334..14664+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGAACATTACAGATATGCCGAACATTACAGATGAGGATTTTGCCGC
TTTAACCAGCTGGAGTGTCAGTGTGGGCGACTCTGTCAAGGAGGATTTTG
CCGCTTTAACCAGCTGGAGTGTCAGTGTGGGCGACTCTGTCAAGGTTGGC
GATGTGGTGTGCGAGATAGAACTGGAGCAGTTCTCGGTGGGAGTCAAGGT
GGAGACATCAGGCTACATCGCTAAAATATGTTGGCGATGTGGTGTGCGAG
ATAGAACTGGAGCAGTTCTCGGTGGGAGTCAAGGTGGAGACATCAGGCTA
CATCGCTAAAATATTAGTAAAGGCTGGTGGCGAGAAGATCCCCGTTGGTG
CATCATTGGCAACTGTGGTCCATTCCGAGGAAGACATCGCCGTGTACTTA
CAAGCATAGTAAAGGCTGGTGGCGAGAAGATCCCCGTTGGTGCATCATTG
GCAACTGTGGTCCATTCCGAGGAAGACATCGCCGTGTACTTACAAGCA
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