mRNA_H-paniculata_contig49021.12064.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig49021.12064.1
Unique NamemRNA_H-paniculata_contig49021.12064.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig49021.12064.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 2.520e-9
Identity = 34/76 (44.74%), Postives = 49/76 (64.47%), Query Frame = 2 
Query:   53 LLNHEVSRHRA--PGAETPLSLLRAVKRNDIPPGAASTTDRKFSRRDRFLAVKRGDISVVLPWLMVYTEAAVAHRR 274
            L+N E++  R   P + TPLSLLRA+K   + P    + D + +R++R+ A+KRGDIS  LPWLM Y +AA +  R
Sbjct:  374 LVNKELAERRELPPRSGTPLSLLRAIKLWYLLPALLHSFDGRITRKERYKALKRGDISSTLPWLMEYAKAASSRSR 449
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig49021.12064.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JH58_9PHAE2.520e-944.74Reverse transcriptase domain-containing protein n=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig49021contigH-paniculata_contig49021:304..656 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size353
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930450.5425363-CDS-H-paniculata_contig49021:303..6541622930450.5425363-CDS-H-paniculata_contig49021:303..654Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49021 304..654 +
1691481297.1696112-CDS-H-paniculata_contig49021:303..6541691481297.1696112-CDS-H-paniculata_contig49021:303..654Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49021 304..654 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig49021.12064.1prot_H-paniculata_contig49021.12064.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig49021 304..654 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig49021.12064.1

>prot_H-paniculata_contig49021.12064.1 ID=prot_H-paniculata_contig49021.12064.1|Name=mRNA_H-paniculata_contig49021.12064.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
GEARSPTPPSITLPILDPPQPRSEPAPGAGSGDAAILAAGGEAQRHSSRC
CFYYRQKILQEGQVPRCEERGHQRRAPVAHGVHGGRGGPPTAGNTSIADR
YRKAAAGCKHKGGISNA
back to top

mRNA from alignment at H-paniculata_contig49021:304..656+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig49021.12064.1 ID=mRNA_H-paniculata_contig49021.12064.1|Name=mRNA_H-paniculata_contig49021.12064.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=353bp|location=Sequence derived from alignment at H-paniculata_contig49021:304..656+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGAAGCACGGTCTCCAACGCCACCTAGCATAACCCTTCCTATACTAGA
CCCTCCTCAACCACGAAGTGAGCCGGCACCGGGCGCCGGGAGCGGAGACG
CCGCTATCCTTGCTGCGGGCGGTGAAGCGCAACGACATTCCTCCCGGTGC
TGCTTCTACTACCGACAGAAAATTCTCCAGGAGGGACAGGTTCCTCGCTG
TGAAGAGAGGGGACATCAGCGTCGTGCTCCCGTGGCTCATGGTGTACACG
GAGGCCGCGGTGGCCCACCGACGGCAGGGAACACGTCTATAGCGGATCGA
TACAGGAAGGCGGCAGCTGGGTGCAAGCACAAAGGGGGGATCTCTAACGC
GGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig49021:304..656+

>mRNA_H-paniculata_contig49021.12064.1 ID=mRNA_H-paniculata_contig49021.12064.1|Name=mRNA_H-paniculata_contig49021.12064.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig49021:304..656+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGAAGCACGGTCTCCAACGCCACCTAGCATAACCCTTCCTATACTAGA
CCCTCCTCAACCACGAAGTGAGCCGGCACCGGGCGCCGGGAGCGGAGACG
CCGCTATCCTTGCTGCGGGCGGTGAAGCGCAACGACATTCCTCCCGGTGC
TGCTTCTACTACCGACAGAAAATTCTCCAGGAGGGACAGGTTCCTCGCTG
TGAAGAGAGGGGACATCAGCGTCGTGCTCCCGTGGCTCATGGTGTACACG
GAGGCCGCGGTGGCCCACCGACGGCAGGGAACACGTCTATAGCGGATCGA
TACAGGAAGGCGGCAGCTGGGTGCAAGCACAAAGGGGGGATCTCTAACGC
GGGTGAAGCACGGTCTCCAACGCCACCTAGCATAACCCTTCCTATACTAG
ACCCTCCTCAACCACGAAGTGAGCCGGCACCGGGCGCCGGGAGCGGAGAC
GCCGCTATCCTTGCTGCGGGCGGTGAAGCGCAACGACATTCCTCCCGGTG
CTGCTTCTACTACCGACAGAAAATTCTCCAGGAGGGACAGGTTCCTCGCT
GTGAAGAGAGGGGACATCAGCGTCGTGCTCCCGTGGCTCATGGTGTACAC
GGAGGCCGCGGTGGCCCACCGACGGCAGGGAACACGTCTATAGCGGATCG
ATACAGGAAGGCGGCAGCTGGGTGCAAGCACAAAGGGGGGATCTCTAACG
CG
back to top