prot_H-paniculata_contig48926.12041.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig48926.12041.1
Unique Nameprot_H-paniculata_contig48926.12041.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length110
Homology
[Close]
BLAST of mRNA_H-paniculata_contig48926.12041.1 vs. uniprot
Match: A0A6H5JWF9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWF9_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 9.450e-12
Identity = 38/83 (45.78%), Postives = 55/83 (66.27%), Query Frame = 0 
Query:    1 MGQPVHDERYEDIILQALPAEYERVRIASYEKRDFGLDDIRHMVHTMYVDSLSRPANTTPVTGRGIAMQAAGKDSSDVHCNYC 83
            M + + DER+ED+ILQA+  +Y+ VR  S+  R FGL++I+  + +MY+DSLSR   T  V GRG+AM A+  DS  + C  C
Sbjct:   24 MVEIISDERFEDVILQAISNDYDYVRPTSFRVRHFGLEEIKTTMKSMYIDSLSRTW-TKSVAGRGVAMPASNGDSI-IKCFNC 104
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig48926.12041.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JWF9_9PHAE9.450e-1245.78Integrase catalytic domain-containing protein n=1 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig48926contigH-paniculata_contig48926:1027..1356 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig48926.12041.1mRNA_H-paniculata_contig48926.12041.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig48926 1006..1356 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig48926.12041.1 ID=prot_H-paniculata_contig48926.12041.1|Name=mRNA_H-paniculata_contig48926.12041.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
MGQPVHDERYEDIILQALPAEYERVRIASYEKRDFGLDDIRHMVHTMYVD
SLSRPANTTPVTGRGIAMQAAGKDSSDVHCNYCRGIGHVIQDCAILKEKA
RRGGPNQSPR
back to top