mRNA_H-paniculata_contig488.12019.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig488.12019.1
Unique NamemRNA_H-paniculata_contig488.12019.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig488.12019.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig488contigH-paniculata_contig488:26452..28413 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size183
Cds size177
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig488.12019.1prot_H-paniculata_contig488.12019.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig488 26452..28407 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930442.582354-CDS-H-paniculata_contig488:26451..265501622930442.582354-CDS-H-paniculata_contig488:26451..26550Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig488 26452..26550 -
1691481294.3303223-CDS-H-paniculata_contig488:26451..265501691481294.3303223-CDS-H-paniculata_contig488:26451..26550Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig488 26452..26550 -
1622930442.5944192-CDS-H-paniculata_contig488:28329..284071622930442.5944192-CDS-H-paniculata_contig488:28329..28407Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig488 28330..28407 -
1691481294.3459353-CDS-H-paniculata_contig488:28329..284071691481294.3459353-CDS-H-paniculata_contig488:28329..28407Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig488 28330..28407 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930442.6278126-UTR-H-paniculata_contig488:28407..284131622930442.6278126-UTR-H-paniculata_contig488:28407..28413Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig488 28408..28413 -
1691481294.3554816-UTR-H-paniculata_contig488:28407..284131691481294.3554816-UTR-H-paniculata_contig488:28407..28413Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig488 28408..28413 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig488.12019.1

>prot_H-paniculata_contig488.12019.1 ID=prot_H-paniculata_contig488.12019.1|Name=mRNA_H-paniculata_contig488.12019.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=59bp
MSGPRLLRRSSLGSEDRSSTGSMDDQIRSSPWRLHQDKLKAVPRQHASGS
ISSPGRPYQ
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mRNA from alignment at H-paniculata_contig488:26452..28413-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig488.12019.1 ID=mRNA_H-paniculata_contig488.12019.1|Name=mRNA_H-paniculata_contig488.12019.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1962bp|location=Sequence derived from alignment at H-paniculata_contig488:26452..28413- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAACGATGTCGGGACCGCGTCTCCTACGGAGATCGTCTCTAGGAAGTGA
AGATAGATCATCGACAGGAAGCATGGATGACCAGGTACGTGTGTCTACAA
CGGGCGCTGATCCGACTAAATCCGTTGTCTTGTCCACAAAGGACGTGATA
CTGACTGGTGTCAGGGAGTATCGTAAGGTTTCGCCTATCAATTTTTTCTG
CCCATGTACGAGCTAAAAGTACATGTCGGCTTGAAGCCCCAAGGTCAACA
CAAATACGACAACGTGGGGTATTTGATGCTATGAGTCGTGGATTCCCAAG
AAAACCGGAGATAAATGCATGTTCCTGAATTTACGAATTAAAATCGAGAT
TTCGCAAAAAAAATATCATAAAACTGACGTAGAGATATACTATCGATATC
AAAGGGGGACAGCGTTCTTTTTTAGCACTGACATGTGCACCATCTTTGCA
AAGTTCCAGGGTCGTGTGACACATCAAGTTCAGCAAAAAACTGTAGTGTT
CAAGTTTCTACGGTTCATGGTTTTAGAAATAACAGTTGCGTCGGTAAAAA
TCGTTCAAAATTTGAGCTGAATATTGTGAATTAAAAGCTGAAATTCTGCG
TATATACTGTAAAATGCTAGTATGGGAAAGGTGACACTTGCCCCCTTTTC
AATCTGGATCGTAGTTCTCCAGAAAGTCGTTAAAAAAAATGATGTGTTAT
GTACTGGAATAACTATTGAATGCAGAAAAGATAACGCCTGCGACACAAGC
ACACTGAGAACTGAGGTTCAAACTACTCCAGTACACCATTATTATTGTAT
TTGCAAGGTGTATGTATATATATATATATATATATATAATAGTGCCAACT
TACTCTCGCTGAAGGATAGGCACTCCGGTGATTAAATTTTTGCGACATGT
AATACTTGAGAAAACCGGGGGACGGAAAGGTTTACAATGCCCTTAGTCAT
GATCTGACGCCATGTTTGTGACTGACTGTACAGCGCGATGAAGACACGTC
TCGCTTCTGTGCAATCCTTTTATAGATAACCACCCCATGCCCGGTTCAGC
GCTGCAACTCGTGTGAAAATTGGACGATACAGTAGCCCCATTATTGATCG
CAACCCTATCAACTATCGACTACATTGAGAAGGAAGAAAAACAGAACGAT
TCATACAAACCAGTTAGCGCGACAGCCCGGGCAATGTGGGCAATCTACAC
AAAGTGTATTGATGGTTTTCCATGTTTTACCGAGCAAGCAACACCCCCCC
CCCCCCTCCATTTCCTATATACCCCTAATTCATCTAATTTTAATTTCGCT
GACGAGTGTATTCAAGTAAAATTCGAAGTCGTGTATAACCTCAACATCGG
TATAAAGGGGAAGTTATATATATTTTAAAGCGTTAGTTCAACTACCTATG
GCGGGTTTGTCTCCTATGCCCCCCTCTCTCCCTTGAATCCTGAGATTGCG
GAAAGAAGACACTAGCGGTTTAAGGAGATGGAAATTGGCCTGACCATACG
AGTGTTGGGGTGGATAGTGTGGATAGAACATTAGAGCTACATTTGGCAAC
GTAAGAAAGAGCGAGTGGCCATAGGACATCGCTCTGATGGGAACGAAGCT
CCGTTTTCTCAAGGACTACACACAGATGCGGTCAATGGTTGATCGAGTAT
AACTACGACAGGTGAAACATGAGGACGCCCGCTTATTGGTCATGGTCAAT
GACTGCAAATTGAAGTCAGCTGCATATCTTTACGATGGGTAACCCCCTCG
GACCTGGGAGCTACTAGCTGTGCATCGTTGGAATAAGTAGGTTGTCGTGT
GATGGGGGCTGAGTCAACATGTGTTGTAGAACTCTATGTGTTATACGTTT
GCCATATTCCCAGATCCGTTCCTCGCCGTGGCGTTTGCACCAAGACAAGC
TGAAGGCGGTGCCGCGACAACATGCCAGCGGCAGCATCTCGTCGCCGGGC
AGACCGTACCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig488:26452..28413-

>mRNA_H-paniculata_contig488.12019.1 ID=mRNA_H-paniculata_contig488.12019.1|Name=mRNA_H-paniculata_contig488.12019.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at H-paniculata_contig488:26452..28413- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGGGACCGCGTCTCCTACGGAGATCGTCTCTAGGAAGTGAAGATAG
ATCATCGACAGGAAGCATGGATGACCAGATGTCGGGACCGCGTCTCCTAC
GGAGATCGTCTCTAGGAAGTGAAGATAGATCATCGACAGGAAGCATGGAT
GACCAGATCCGTTCCTCGCCGTGGCGTTTGCACCAAGACAAGCTGAAGGC
GGTGCCGCGACAACATGCCAGCGGCAGCATCTCGTCGCCGGGCAGACCGT
ACCAGATCCGTTCCTCGCCGTGGCGTTTGCACCAAGACAAGCTGAAGGCG
GTGCCGCGACAACATGCCAGCGGCAGCATCTCGTCGCCGGGCAGACCGTA
CCAG
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