mRNA_H-paniculata_contig488.12018.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig488.12018.1
Unique NamemRNA_H-paniculata_contig488.12018.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig488.12018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig488contigH-paniculata_contig488:23746..24519 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size216
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930442.528213-CDS-H-paniculata_contig488:23747..238331622930442.528213-CDS-H-paniculata_contig488:23747..23833Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig488 23748..23833 -
1691481294.3068151-CDS-H-paniculata_contig488:23747..238331691481294.3068151-CDS-H-paniculata_contig488:23747..23833Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig488 23748..23833 -
1622930442.548008-CDS-H-paniculata_contig488:24392..245191622930442.548008-CDS-H-paniculata_contig488:24392..24519Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig488 24393..24519 -
1691481294.3182018-CDS-H-paniculata_contig488:24392..245191691481294.3182018-CDS-H-paniculata_contig488:24392..24519Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig488 24393..24519 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig488.12018.1prot_H-paniculata_contig488.12018.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig488 23748..24519 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig488.12018.1

>prot_H-paniculata_contig488.12018.1 ID=prot_H-paniculata_contig488.12018.1|Name=mRNA_H-paniculata_contig488.12018.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp
RAEGSGPSNNSLSPASKALELADQRYERELRARGVGSDDDSADGSDDSIG
PKSTSTSRASGLRSASEPGEL
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mRNA from alignment at H-paniculata_contig488:23746..24519-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig488.12018.1 ID=mRNA_H-paniculata_contig488.12018.1|Name=mRNA_H-paniculata_contig488.12018.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=774bp|location=Sequence derived from alignment at H-paniculata_contig488:23746..24519- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGGCCGAAGGGTCAGGCCCGTCCAACAACAGCCTATCACCGGCCTCCAA
AGCGCTGGAGTTGGCCGACCAGCGGTACGAGCGGGAGCTGCGCGCGAGGG
GTGTTGGCAGCGACGACGATAGCGCTGGTGTGTGTGTGTGTGTGTGTGTG
TATTTGGTATCCATGTCCACTTTGTTCGCCCCGATTCCTCACAGGCATAT
ATGGATATGGGGTTTTCCTCCTTGTGTTTTGTAGGCGGGGGGTTCCGTTT
GCCCTTCTTTCAGAGCTCAATGAAAATTCATGGCAGATTGTATTGTTTTT
TGCTGTTTTTGGGGGATTGCGCGTGGACGGCGACGATACAAACCTGATCG
TAACTAACTTCTAAAACCAGATCTTAACCCTCACCCTTACGCAAACTGTA
TTCATTCGTGGTGTCAACTTGAAGCCCATCAGCGCAAAGAAAGGCTAGTG
TTGGAGTTGGCAGCTTCGCCCCACCCGCACGTTCACCCAGACAACGTAAA
ACTATCCACGTATTTGGGCAAATCCGTCTTGTTTGATCAACAAACCACCG
TTGTAGATAGAGTGCCTGTGTATACAGTAATTTTATGGTCAGCGGCCATT
GCTTTCAACATTTTGACAGTGAAAATTTAACATACCACATGGACCAAAAC
CGTTTTATCGACCAAACCGTTACAAACTACGTGCAGATGGTAGCGATGAT
TCCATCGGACCGAAGTCGACGTCCACCAGCAGAGCTAGCGGGCTTCGCTC
CGCCAGTGAGCCGGGAGAGCTGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig488:23746..24519-

>mRNA_H-paniculata_contig488.12018.1 ID=mRNA_H-paniculata_contig488.12018.1|Name=mRNA_H-paniculata_contig488.12018.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at H-paniculata_contig488:23746..24519- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGGCCGAAGGGTCAGGCCCGTCCAACAACAGCCTATCACCGGCCTCCAA
AGCGCTGGAGTTGGCCGACCAGCGGTACGAGCGGGAGCTGCGCGCGAGGG
GTGTTGGCAGCGACGACGATAGCGCTGCGGGCCGAAGGGTCAGGCCCGTC
CAACAACAGCCTATCACCGGCCTCCAAAGCGCTGGAGTTGGCCGACCAGC
GGTACGAGCGGGAGCTGCGCGCGAGGGGTGTTGGCAGCGACGACGATAGC
GCTGATGGTAGCGATGATTCCATCGGACCGAAGTCGACGTCCACCAGCAG
AGCTAGCGGGCTTCGCTCCGCCAGTGAGCCGGGAGAGCTGATGGTAGCGA
TGATTCCATCGGACCGAAGTCGACGTCCACCAGCAGAGCTAGCGGGCTTC
GCTCCGCCAGTGAGCCGGGAGAGCTG
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