mRNA_H-paniculata_contig11877.1202.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11877.1202.1
Unique NamemRNA_H-paniculata_contig11877.1202.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig11877.1202.1 vs. uniprot
Match: A0A498M2F0_LABRO (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498M2F0_LABRO)

HSP 1 Score: 276 bits (706), Expect = 3.050e-79
Identity = 201/664 (30.27%), Postives = 318/664 (47.89%), Query Frame = 1
Query:    1 SPYEKWHGTAPKLGHLHVFRCTAYVMFQSQQRSKLDDRAWAGMFLGYDEDSPSYRIYHIQPGKQERPVEQEREI*RRGLRNRSSRTAGARRDAQHGRRIFNSASHASGYSMPRPRRARKRN*HRRPDVGVANAAHIVNTFAASHQRKPVHGRHW*PHRDGI*GGAEIRGRSIKGPRGGKMARGNEGRVGGVGEKWNMGKRGPGEVTGRAEGDSYEMDLQAQAEGGRQR-GTLQSATGGS-------RVFTGGG*RF---L*K*CVDAAYLNVPVEEELFVKLPPEFSPFSRDVRFVRRLRKSLYSLKQGGPNWNSILDHFLVEIGLNRSTTDPCLYFSRDDGGETDIIVAVYDDDLVIVG-RRKKVDEFKHDISQHFRMKDLGSLSRMLGIEGRGDHPNSTITIL*GSYFREVLKRYGFDECRGVPTPAEGKAKILAPESADKADNSTEYRGMVESLMYASTETRPDTAYAVHQAARRMEDPCRENFSTCKRIFRYLSAASHPGITFGGKSNGHSLEGFLDTDWAEDVEDRKSTTGYVFKLSDGAIGWCSRKQQLVTWSSTEAKYVATGEVKKETVYLRGLL*SIGFGHRGSTTLFEDYKSAISLSKGSGAHCRTKHIGVRWHKIREWTRGGVLTLKYVQTGDQLADILTKELSRLEFQRLRNV 1956
            +P+E W G  PK+ HL +F CT Y      +R KLD +A   + LGY  ++  YR+Y  +  K    V   R++      +   +   A  D    R +            P  +  R     + PD          N        K V      P +       E    S+       +    +GR   VG KW        +V   A+G       +  A+G  Q+ G+    T          R       ++   L +  V  A+LN  ++EE++++ P  F    ++   V +L +S+Y LKQ    WN +LD  L ++G  ++T DPC+Y +    GE   I+AVY DD+++ G   K++ E K  +++HF +KD+G L+  LG++         I +   +Y   VLK++G +  + V TP +   K++      +  +  +++  V SL+Y ST TRPD AYAV+  AR    P +++++  KRI RYL    + G+ +  K       GF D DWA D  DRKS +GY+F++S  A+ W S+KQ  V  S+ EA+Y+A     +E V++R L+  +     G T +FED +SAI ++K S  H R KHI +++H IRE   GGV+ L+Y  T D +AD+ TK LS+ +F +LR +
Sbjct:   99 TPFEAWTGEKPKVDHLRIFGCTVYAHVPKDERKKLDPKAKKCILLGYGTETKGYRLYDSKLAK----VFFSRDVIFNESNHAFEKEPVANEDGAVNRYVEFDCQEPDNEESPEQKVQRSERLRKPPDYYGEWVTVASNPTTEPKTVKDVLSS---PDKAKWKEAMEKEMESLYANNVWNLVELPKGRKA-VGSKWVF------KVKVDADGTFERHKARLVAQGFSQKFGSDYDETFSPVVRFESVRTIIAQAVQYGLKLHQMDVKTAFLNGELKEEVYMQQPEGFVVKGKE-HLVCKLNRSIYGLKQSPRCWNIVLDEQLKKMGFVQTTGDPCIYTAAT--GEM-FIIAVYVDDILLAGCSDKRMMEVKKMLAKHFEIKDMGELTHFLGVKIIQKPETGEIWMGQATYAENVLKKFGMENSKPVSTPVDINTKLVKHSDDSEVMDPKQFQSAVGSLLYLSTRTRPDIAYAVNNVARFCAKPTKQHWTAVKRIMRYLKGTLNLGLLYN-KDKPKECIGFSDADWAGDQNDRKSMSGYMFQISGAAVSWRSKKQTCVALSTAEAEYMALASAAQEAVWMRQLMTDLKVNQAGPTVMFEDNQSAICMAKNSQFHGRAKHIDIKYHFIREKIAGGVIDLQYCNTDDMVADMFTKGLSQEKFVKLREM 743          
BLAST of mRNA_H-paniculata_contig11877.1202.1 vs. uniprot
Match: A0A7D9KES8_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9KES8_PARCT)

HSP 1 Score: 274 bits (701), Expect = 5.440e-79
Identity = 150/401 (37.41%), Postives = 233/401 (58.10%), Query Frame = 1
Query:  760 VDAAYLNVPVEEELFVKLPPEFSPFSRDVRFVRRLRKSLYSLKQGGPNWNSILDHFLVEIGLNRSTTDPCLYFSRDDGGETDIIVAVYDDDLVIVGRR-KKVDEFKHDISQHFRMKDLGSLSRMLGIEGRGDHPNSTITIL*GSYFREVLKRYGFDECRGVPTPAEGKAKILAPESADKADNSTEYRGMVESLMYASTETRPDTAYAVHQAARRMEDPCRENFSTCKRIFRYLSAASHPGITFGGKSNGHSLEGFLDTDWAEDVEDRKSTTGYVFKLSDGAIGWCSRKQQLVTWSSTEAKYVATGEVKKETVYLRGLL*SIGFGHRGSTTLFEDYKSAISLSKGSGAHCRTKHIGVRWHKIREWTRGGVLTLKYVQTGDQLADILTKELSRLEFQRLRNVL 1959
            V  A+LN  ++EE+++K    F    ++   V RLR+S+Y LKQ    WNS+LD  L  +G  ++T DPC+Y  +++GGE   I+AVY DD+++ G+  +K++E K  +++ F+MKD+G L   LG++      +  I I   +Y + VL+R+G +  +   TP     K+       +  +   Y+  V  L+Y ST+TRPD AYAV   AR   DP  E++   KRI RYL+     G+ + G     S  G+ D DWA D++DRKST+GYVF++S+ AI W S+KQ  V  S+ EA+Y+A     +E V+L+ LL  +     G   + ED ++AI ++K +  H R KHI +++H IRE      + L+Y  T + +ADI TK LS ++F +LR +L
Sbjct:   94 VTTAFLNGDLKEEVYMKQTEGFIEKGKE-HLVCRLRRSIYGLKQSPRCWNSVLDRKLKNMGFVQTTGDPCIYV-KEEGGEI-FIIAVYVDDILLAGKNDQKINEVKQALAEQFQMKDMGQLHYFLGVKVIPKPDSKEIWIGQEAYTKSVLERFGMESSKPASTPVNPGTKLKKAADDSQRVDQVNYQCAVGHLLYLSTKTRPDIAYAVSDVARFSADPTEEHWIAVKRIMRYLNGTRDMGLLYDGSKTTTSCVGYSDADWAGDLDDRKSTSGYVFQISNAAISWRSKKQSCVALSTAEAEYMALASATQEAVWLQQLLSDLKSKPTGPMLILEDNQAAICMAKNAQYHGRAKHIDIKYHFIREHVASAAVKLEYCSTEEMIADIFTKGLSVVQFTKLRKML 491          
BLAST of mRNA_H-paniculata_contig11877.1202.1 vs. uniprot
Match: A0A7D9HZ03_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HZ03_PARCT)

HSP 1 Score: 270 bits (690), Expect = 9.330e-78
Identity = 139/400 (34.75%), Postives = 238/400 (59.50%), Query Frame = 1
Query:  760 VDAAYLNVPVEEELFVKLPPEFSPFSRDVRFVRRLRKSLYSLKQGGPNWNSILDHFLVEIGLNRSTTDPCLYFSRDDGGETDIIVAVYDDDLVIVGRR-KKVDEFKHDISQHFRMKDLGSLSRMLGIEGRGDHPNSTITIL*GSYFREVLKRYGFDECRGVPTPAEGKAKILAPESADKADNSTEYRGMVESLMYASTETRPDTAYAVHQAARRMEDPCRENFSTCKRIFRYLSAASHPGITFGGKSNGHSLEGFLDTDWAEDVEDRKSTTGYVFKLSDGAIGWCSRKQQLVTWSSTEAKYVATGEVKKETVYLRGLL*SIGFGHRGSTTLFEDYKSAISLSKGSGAHCRTKHIGVRWHKIREWTRGGVLTLKYVQTGDQLADILTKELSRLEFQRLRNV 1956
            V AA+LN  +E+E+++K P  F    ++     +L KSLY LKQ    WNS+LD  L  IG  ++ +DPC+Y   +DG     +VA++ DD+++ G+  +K+ + K  I++ F++KD+G L  +LG++   +  ++ + I   +Y   ++K+YG + C+ V TP +  +K+++     +  N  E++  V SL+Y S+ TRPD  +AV+  A+   +P  E+++  KRIFRYL    + G+ +   +N   + GF D DWA D+ DRKST+GY F+++  A+ W S+KQ  V  S+  A+YVA     +E +++R LL  +        T++ED +SAI++SK    H R+KHI ++++ +R+      LT+ Y  TG  LAD+ TK + + +F++LR +
Sbjct:  258 VTAAFLNGELEDEVYMKQPEGFEVKGKE-HLACKLNKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDGNI--FVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAMEDSELFNKEEHQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYSENANPDCV-GFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAAAEYVALSAAAQEALWMRQLLTDLNVNIDEPMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYYFVRDQVEKKTLTVLYCPTGSMLADLFTKGIPKEQFKKLREL 651          
BLAST of mRNA_H-paniculata_contig11877.1202.1 vs. uniprot
Match: A0A6S7HEL0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HEL0_PARCT)

HSP 1 Score: 277 bits (709), Expect = 6.590e-77
Identity = 145/401 (36.16%), Postives = 242/401 (60.35%), Query Frame = 1
Query:  760 VDAAYLNVPVEEELFVKLPPEFSPFSRDVRFVRRLRKSLYSLKQGGPNWNSILDHFLVEIGLNRSTTDPCLYFSRDDGGETDI-IVAVYDDDLVIVGRR-KKVDEFKHDISQHFRMKDLGSLSRMLGIEGRGDHPNSTITIL*GSYFREVLKRYGFDECRGVPTPAEGKAKILAPESADKADNSTEYRGMVESLMYASTETRPDTAYAVHQAARRMEDPCRENFSTCKRIFRYLSAASHPGITFGGKSNGHSLEGFLDTDWAEDVEDRKSTTGYVFKLSDGAIGWCSRKQQLVTWSSTEAKYVATGEVKKETVYLRGLL*SIGFGHRGSTTLFEDYKSAISLSKGSGAHCRTKHIGVRWHKIREWTRGGVLTLKYVQTGDQLADILTKELSRLEFQRLRNV 1956
            V AA+LN  +E+E+++K P  F    ++   V +L KSLY LKQ    WNS+LD  L  IG  ++ +DPC+Y   +DG   DI +VA++ DD+++ G+  +K+ + K  I++ F++KD+G L  +LG++   +  ++ + I   +Y   ++K+YG + C+ V TP +  +K+++     +  N  EY+  V SL+Y S+ TRPD  +AV+  A+   +P  E+++  KRIFRYL    + G+ +   +N   + GF D DWA D+ DRKST+GY F+++  A+ W S+KQ  V  S+ EA+YVA     +E +++R LL  +        T++ED +SAI++SK    H R+KHI +++H +R+      LT+ Y  TG  LAD+ TK + + +F++LR +
Sbjct:  872 VTAAFLNGELEDEVYMKQPEGFEVKGKE-HLVCKLNKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDG---DIFVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAIEDSELFNKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYSENANPDCV-GFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVALSAAAQEALWMRQLLTDLNVNIDEPMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYHFVRDQVEKKTLTVLYCPTGSMLADLFTKGIPKEQFKKLREL 1265          
BLAST of mRNA_H-paniculata_contig11877.1202.1 vs. uniprot
Match: A0A6S7JEY7_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JEY7_PARCT)

HSP 1 Score: 267 bits (683), Expect = 6.890e-77
Identity = 147/401 (36.66%), Postives = 230/401 (57.36%), Query Frame = 1
Query:  760 VDAAYLNVPVEEELFVKLPPEFSPFSRDVRFVRRLRKSLYSLKQGGPNWNSILDHFLVEIGLNRSTTDPCLYFSRDDGGETDIIVAVYDDDLVIVGRR-KKVDEFKHDISQHFRMKDLGSLSRMLGIEGRGDHPNSTITIL*GSYFREVLKRYGFDECRGVPTPAEGKAKILAPESADKADNSTEYRGMVESLMYASTETRPDTAYAVHQAARRMEDPCRENFSTCKRIFRYLSAASHPGITFGGKSNGHSLEGFLDTDWAEDVEDRKSTTGYVFKLSDGAIGWCSRKQQLVTWSSTEAKYVATGEVKKETVYLRGLL*SIGFGHRGSTTLFEDYKSAISLSKGSGAHCRTKHIGVRWHKIREWTRGGVLTLKYVQTGDQLADILTKELSRLEFQRLRNVL 1959
            V  A+LN  ++EE+++K P  F    ++   V RLR+S+  LKQ    WNS+LD  L  +G  ++T DPC+Y  +++GGE   I+AVY DD+++ G+  +K++E K  +++ F+MKD+G     LG++      +  I I   +Y + VL+R+G +  +   TP     K+       +  +   Y+  V  L+Y ST+TRPD AYAV   AR    P  E++   KRI RYL+     G+ + G     S  G+ D DWA D++DRKST+GYVF++S+ AI W S+KQ  V  S+ EA+Y+      +E V+L+ LL  +     G   + ED ++AI ++K +  H R KHI +++H IRE      + L+Y  T + +ADI TK LS ++F +LR +L
Sbjct:  242 VTTAFLNGDLKEEVYMKQPEGFIDKGKE-HLVCRLRRSICGLKQSPRCWNSVLDRKLKNMGFVQTTGDPCIYV-KEEGGEI-FIIAVYVDDILLAGKNDQKINEVKQALAEQFQMKDMGQRHYFLGVKVIQKPDSKEIWIGQEAYTKSVLERFGMESSKPASTPVNPGTKLKKAADDSQRVDQVNYQCAVGHLLYLSTKTRPDIAYAVSDVARFSAHPTEEHWIAVKRIMRYLNGTRDMGLLYDGSKTTTSCVGYSDADWAGDLDDRKSTSGYVFQISNAAISWRSKKQSCVALSTAEAEYMTLASATQEAVWLQQLLSDLKSKPTGPMLILEDNQAAICMAKNAQYHGRAKHIDIKYHFIREHVASAAVKLEYCSTEEMIADIFTKGLSVVQFTKLRKML 639          
BLAST of mRNA_H-paniculata_contig11877.1202.1 vs. uniprot
Match: A0A7D9M6E1_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M6E1_PARCT)

HSP 1 Score: 255 bits (651), Expect = 3.890e-75
Identity = 135/382 (35.34%), Postives = 223/382 (58.38%), Query Frame = 1
Query:  817 PEFSPFSRDVRFVRRLRKSLYSLKQGGPNWNSILDHFLVEIGLNRSTTDPCLYFSRDDGGETDI-IVAVYDDDLVIVGRR-KKVDEFKHDISQHFRMKDLGSLSRMLGIEGRGDHPNSTITIL*GSYFREVLKRYGFDECRGVPTPAEGKAKILAPESADKADNSTEYRGMVESLMYASTETRPDTAYAVHQAARRMEDPCRENFSTCKRIFRYLSAASHPGITFGGKSNGHSLEGFLDTDWAEDVEDRKSTTGYVFKLSDGAIGWCSRKQQLVTWSSTEAKYVATGEVKKETVYLRGLL*SIGFGHRGSTTLFEDYKSAISLSKGSGAHCRTKHIGVRWHKIREWTRGGVLTLKYVQTGDQLADILTKELSRLEFQRLRNV 1956
            PE          V +L KS Y LKQ    WNS+LD  L  IG  ++ +DPC+Y   +DG   DI +VA++ DD+++ G+  +K+ + K  I++ F++KD+G L  +LG++   +  +  + I   +Y   ++K+YG + C+ V TP +  +K+++     +  N  EY+  V SL+Y S+ TRPD  +AV+  A+   +   E+++  KRIFRYL    + G+ +   +N   + GF D DWA D+ DRKST+GY F+++  A+ W S+KQ  V  S+ EA+YVA     +E +++R LL  +        T++ED +SAI++SK    H R+KHI +++H +R+      LT+ Y  TG  LAD+ TK + + +F++LR +
Sbjct:    1 PEGFEVKGKEHLVCKLNKSRYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDG---DIFVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DGKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAMEDSELFNKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANFTNEHWTAVKRIFRYLKKTVNYGLLYSENANPDCV-GFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVALSAAAQEALWMRQLLTDLNVNIDKPMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYHFVRDQVEKKTLTVLYCPTGSMLADLFTKGIPKEQFKKLREL 376          
BLAST of mRNA_H-paniculata_contig11877.1202.1 vs. uniprot
Match: A0A6S7HNY1_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HNY1_PARCT)

HSP 1 Score: 272 bits (695), Expect = 6.620e-75
Identity = 148/404 (36.63%), Postives = 230/404 (56.93%), Query Frame = 1
Query:  760 VDAAYLNVPVEEELFVKLPPEFSPFSRDVRFVRRLRKSLYSLKQGGPNWNSILDHFLVEIGLNRSTTDPCLYFS---RDDGGETDIIVAVYDDDLV-IVGRRKKVDEFKHDISQHFRMKDLGSLSRMLGIEGRGDHPNSTITIL*GSYFREVLKRYGFDECRGVPTPAEGKAKILAPESADKADNSTEYRGMVESLMYASTETRPDTAYAVHQAARRMEDPCRENFSTCKRIFRYLSAASHPGITFGGKSNGHSLEGFLDTDWAEDVEDRKSTTGYVFKLSDGAIGWCSRKQQLVTWSSTEAKYVATGEVKKETVYLRGLL*SIGFGHRGSTTLFEDYKSAISLSKGSGAHCRTKHIGVRWHKIREWTRGGVLTLKYVQTGDQLADILTKELSRLEFQRLRNVL 1959
            V  A+L   ++E +F+K P  +    R    V +L +S+Y LKQ    WNS +D FL+  G  +S  DPC+Y     R +G    +I+A+Y DD++      + + + K  +++ F+++D+G +S +LG+  + +    T+TI    Y   VLKR+G  EC+ V TP E   K  +    D   +  EY+  +  L YA+  TRPD A AV   ++ M  P ++++   KR+ RY+    H G+TF    N   L G+ D DW  DVE R+ST+GYVF++ +  I WCS++Q  V+ S+TEA+Y+A     +E V+LR LL  IG      +T+FED + AI LSK    H RTKHI V +H IRE     ++ +KY +T + LAD++TK L ++ F+R R+++
Sbjct:  926 VKTAFLQGELDEVIFMKQPEGYVDQERPDH-VCKLNRSIYGLKQAARCWNSAIDTFLISNGYTKSNADPCIYIKSIKRKNGKIDFVILALYVDDILWFSNNTEMLKKEKEALAKRFQVEDMGEVSYVLGMSVKRNREARTLTINQPKYLEGVLKRFGMQECKAVSTPLEPGRKFESLSENDTPIDVREYQMAIGCLTYATNATRPDLAAAVGILSKYMARPGKDHWQGVKRVLRYVKGTLHSGLTFTAHGNNPVLYGYADADWGGDVETRRSTSGYVFQIQNNTISWCSKRQASVSRSTTEAEYIALSTACQEAVWLRRLLSDIGLKQDVPSTIFEDNQGAIELSKNPKFHNRTKHIDVSFHFIREQVNRNIVCVKYGRTENMLADVMTKALPKVSFERFRDMM 1328          
BLAST of mRNA_H-paniculata_contig11877.1202.1 vs. uniprot
Match: A0A5S6QJX2_TRIMR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QJX2_TRIMR)

HSP 1 Score: 257 bits (657), Expect = 9.360e-75
Identity = 144/395 (36.46%), Postives = 224/395 (56.71%), Query Frame = 1
Query:  760 VDAAYLNVPVEEELFVKLPPEFSPFSRDVRFVRRLRKSLYSLKQGGPNWNSILDHFLVEIGLNRSTTDPCLYFSRDDGGETDIIVAVYDDDLVIVGRRKKVD-EFKHDISQHFRMKDLGSLSRMLGIEGRGDHPNSTITIL*GSYFREVLKRYGFDECRGVPTPAEGKAKILAPESADKADNSTEYRGMVESLMYASTETRPDTAYAVHQAARRMEDPCRENFSTCKRIFRYLSAASHPGITFGGKSNGH-SLEGFLDTDWAEDVEDRKSTTGYVFKLSDGAIGWCSRKQQLVTWSSTEAKYVATGEVKKETVYLRGLL*SIGFGHRGSTTLFEDYKSAISLSKGSGAHCRTKHIGVRWHKIREWTRGGVLTLKYVQTGDQLADILTKELSRLEF 1938
            V  AYLN  ++EELF++ PP FS  +   + V RLR+SLY LKQ    WN +    L ++G   +  DPCL FSR +   T   V +Y DDL+I G   ++  +    ++ +F +KDLG + + LG++   +   S + +   +  R +LK +G  + + V TP E        E + K  ++ EYR  + SL+Y +T TRPD ++AV Q  R ME P + ++   KR+ RYL+ + +  + F   +NG   L GF+D DWA D  DRKST+GY FK+    + W SRKQ  V  SSTEA+Y+A  E  ++ +++R +L  IG      T ++ED +  I +++      RTKHI +R+H++RE    G++ L Y  + +  AD+LTK L++ +F
Sbjct:   89 VKTAYLNGKLDEELFLEPPPGFSQPTTGGK-VLRLRRSLYGLKQSARVWNQVATDALQKLGFRPNRADPCL-FSRSEKNNTMSYVLLYVDDLLIAGSSPELTCDVGKQLNSYFEIKDLGEVRQYLGMQVEREEDGSFL-LYQAAKVRHLLKEHGLLDAKPVATPMEANFLSSTEEESPKLPDNAEYRKAIGSLLYLATATRPDISFAVGQLCRCMEHPTQRDWKAVKRVMRYLAGSPYRKLRFS--ANGSIKLSGFVDADWAGDQADRKSTSGYAFKVGTSTVAWSSRKQSFVALSSTEAEYIAASEACRDLLWIRQVLEDIGIEQVEPTIVYEDNQGCIKMAQSERHTRRTKHIDIRYHQLRELQESGIIALTYCPSNEMPADMLTKPLTKDKF 478          
BLAST of mRNA_H-paniculata_contig11877.1202.1 vs. uniprot
Match: A0A7D9JFU5_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9JFU5_PARCT)

HSP 1 Score: 257 bits (657), Expect = 3.120e-74
Identity = 147/408 (36.03%), Postives = 225/408 (55.15%), Query Frame = 1
Query:  760 VDAAYLNVPVEEELFVKLPPEFSPFSRDVRFVRRLRKSLYSLKQGGPNWNSILDHFLVEIGLNRSTTDPCLY---FSRDDGGETDIIVAVYDDDLVIVGRRKKVDEFKHDI-SQHFRMKDLGSLSRMLGIEGRGDHPNSTITIL*GSYFREVLKRYGFDECRGVPTPAEGKAKILAPESADKADNSTEYRGMVESLMYASTETRPDTAYAVHQAARRMEDPCRENFSTCKRIFRYLSAASHPGITF----GGKSNGHSLEGFLDTDWAEDVEDRKSTTGYVFKLSDGAIGWCSRKQQLVTWSSTEAKYVATGEVKKETVYLRGLL*SIGFGHRGSTTLFEDYKSAISLSKGSGAHCRTKHIGVRWHKIREWTRGGVLTLKYVQTGDQLADILTKELSRLEFQRLRNVL 1959
            V  A+LN  +E ++++  P  F        +V +L+KSLY LKQ    WN  LD FL + G  +S  D C+Y      D+G  + +I+AVY DD++ +     +   + D+  +HF M D G +  +LG+  + D    T+ I    Y   VL R+G   C+ + TP E        E  ++  +   Y+  +  L Y ST TRPD + AV   +  M +P +E+++  KR+ RY+    + G+ F        NG  L G+ D +WA DV+ R+ST+GYVFK+++  + WCS+KQ  VT S+TEA+YVA  +  +E +++R LL  IG      TT++ED + AI +SK +  H RTKHI VR+H +RE      + + Y  T   LADI+TK L++  FQRLR++L
Sbjct:  126 VKTAFLNGYIEHDIYMSQPDGFVD-QEHPEYVCKLKKSLYGLKQSARCWNQTLDSFLTKNGYRKSNADNCIYVKSIKNDNGFISFVILAVYVDDIIPISNDINMLNTEKDLLCKHFEMTDQGEIHFILGMTIKRDRETKTLFISQQRYLESVLDRFGMANCKPISTPLETTYHKRTEE--EEGFDKNLYQQAIGRLTYISTATRPDISAAVSILSSYMSNPSKEHWNGVKRLLRYIKGTLNFGLKFTTSENDDENGDELYGYSDANWAGDVDSRRSTSGYVFKVANSTVSWCSKKQASVTKSTTEAEYVALSQATQEAIWMRRLLSDIGCKSEEPTTMYEDNQGAIEISKNARFHNRTKHIDVRFHFVREKVLSNEVKVIYCPTEHMLADIMTKGLTKKIFQRLRSML 530          
BLAST of mRNA_H-paniculata_contig11877.1202.1 vs. uniprot
Match: UPI001F004464 (DDE-type integrase/transposase/recombinase n=1 Tax=Corynebacterium parakroppenstedtii TaxID=2828363 RepID=UPI001F004464)

HSP 1 Score: 264 bits (675), Expect = 3.190e-73
Identity = 216/697 (30.99%), Postives = 333/697 (47.78%), Query Frame = 1
Query:    1 SPYEKWHGTAPKLGHLHVFRCTAYVMFQSQQRSKLDDRAWAGMFLGYDEDSPSYRIYHIQPGKQERPVEQEREI*RRGLRNRSSRT-------------AGARRDAQH-------GRRIFNSASHASGYSMPRPRRARKRN*HRRPDVGVANAAHIVNTFAASHQ---RKPVHGRHW*PHRDGI*GGAEIRGRSIKG-------PRGGKMARGNEGRVGGVGEKW--NMGKRGPGEVTGRAEGDSYEMDLQAQAEGGRQRGTLQSATGGSRVFTGGG*RFL*K*C-----------VDAAYLNVPVEEELFVKLPPEFSPFSRDVRFVRRLRKSLYSLKQGGPNWNSILDHFLVEIGLNRSTTDPCLYFSRDDGGETDIIVAVYDDDLVIVGRRKK-VDEFKHDISQHFRMKDLGSLSRMLGIEGRGDHPNSTITIL*GSYFREVLKRYGFDECRGVPTPAEGKAKILAPESADKADNSTEYRGMVESLMYASTETRPDTAYAVHQAARRMEDPCRENFSTCKRIFRYLSAASHPGITFGGKSNGHSLEGFLDTDWAEDVEDRKSTTGYVFKLSDGAIGWCSRKQQLVTWSSTEAKYVATGEVKKETVYLRGLL*SIGFGHRGSTTLFEDYKSAISLSKGSGAHCRTKHIGVRWHKIREWTRGGVLTLKYVQTGDQLADILTKELSRLEFQRLRNVL 1959
            +P E W G  P + HL VF   AY     + RSKLDD++ A +F+GYD +S  Y++Y+  P      + ++ E    G  + SS                 A +D Q           +   AS  S  +     RAR           + N   ++  FA        + V  + W   RD +    EI+             P+G K           +G KW     K   GE+      + Y+  L   A+G  QR  +      + V      R +               V +A+LN  ++EE++++ P  +    ++ + V RL+K+LY LKQ    WNS +D +L E G  +   +  LY    DG    +IV +Y DDL+  G  ++ +DEFK  +++ F M D+G ++  LGIE +       I I    Y +E++K++  D+C  V TP E   K+   +  +K D  T ++ +V SL Y +  TRPD  YA    +R ME+P   +  T +RI RYL    + G+ F   SN + L G+ D+DWA D++DRKSTTG+VF + D A  W S+KQ +VT S+ EA+YVA        +++R LL  +G+     TT+  D KSA++L+K    H R+KHI  R+H IRE      + ++YV++ DQ+ADI TK L + +F +LR++L
Sbjct:  327 TPQESWSGRKPGISHLRVFGSKAYAHVPDETRSKLDDKSKAFIFIGYDSNSKGYKLYN--PDTNNLVISRDVEFDEEGEWDFSSHEDFNSIMPTEEEEQPTAEQDVQQEPTTPLTSPTVVQDASPPSFLNERSVERARSLGDIYEDTERLENLT-LLCLFADCEPVTFEEAVQSKKW---RDAM--DEEIKSIEKNDTWELTSLPKGHKA----------IGVKWVYKAKKNSKGEI------ERYKARL--VAKGYSQRAGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGVLDEEVYIQQPMGYKVKMQEDK-VLRLKKALYGLKQAPRAWNSRIDKYLQENGFAKCPHEHALYTKMKDGDI--LIVCLYVDDLIFAGNNQRMIDEFKQSMAKVFEMTDIGLMAYYLGIEVK--QLEDGIFISQEGYAKEIIKKFKMDDCNPVNTPVECGIKLSKHDEDEKVDT-TMFKSLVGSLRYLTC-TRPDILYATGLISRYMENPTTTHLKTARRILRYLKGTINFGL-FYSTSNDYKLVGYSDSDWAGDIDDRKSTTGFVFFMGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWMRSLLKELGWPQEDPTTICVDNKSALALAKNPVFHDRSKHIDTRYHYIRECITRKDVQVEYVKSKDQVADIFTKPLKQEDFIKLRSLL 989          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11877.1202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A498M2F0_LABRO3.050e-7930.27Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A7D9KES8_PARCT5.440e-7937.41Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A7D9HZ03_PARCT9.330e-7834.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6S7HEL0_PARCT6.590e-7736.16Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A6S7JEY7_PARCT6.890e-7736.66Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9M6E1_PARCT3.890e-7535.34Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6S7HNY1_PARCT6.620e-7536.63Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A5S6QJX2_TRIMR9.360e-7536.46Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9JFU5_PARCT3.120e-7436.03Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI001F0044643.190e-7330.99DDE-type integrase/transposase/recombinase n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11877contigH-paniculata_contig11877:1571..3844 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.5
Seed ortholog evalue1.8e-23
Seed eggNOG ortholog67593.Physo109433
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QHRW@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons3
Model size1959
Cds size393
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11877.1202.1prot_H-paniculata_contig11877.1202.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11877 1817..2209 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928899.3353233-UTR-H-paniculata_contig11877:1570..18161622928899.3353233-UTR-H-paniculata_contig11877:1570..1816Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11877 1571..1816 -
1691480661.1920767-UTR-H-paniculata_contig11877:1570..18161691480661.1920767-UTR-H-paniculata_contig11877:1570..1816Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11877 1571..1816 -
1622928899.3819098-UTR-H-paniculata_contig11877:2209..22341622928899.3819098-UTR-H-paniculata_contig11877:2209..2234Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11877 2210..2234 -
1691480661.2124717-UTR-H-paniculata_contig11877:2209..22341691480661.2124717-UTR-H-paniculata_contig11877:2209..2234Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11877 2210..2234 -
1622928899.427001-UTR-H-paniculata_contig11877:2309..31551622928899.427001-UTR-H-paniculata_contig11877:2309..3155Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11877 2310..3155 -
1691480661.219907-UTR-H-paniculata_contig11877:2309..31551691480661.219907-UTR-H-paniculata_contig11877:2309..3155Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11877 2310..3155 -
1622928899.442779-UTR-H-paniculata_contig11877:3395..38441622928899.442779-UTR-H-paniculata_contig11877:3395..3844Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11877 3396..3844 -
1691480661.2273877-UTR-H-paniculata_contig11877:3395..38441691480661.2273877-UTR-H-paniculata_contig11877:3395..3844Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11877 3396..3844 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928899.3636181-CDS-H-paniculata_contig11877:1816..22091622928899.3636181-CDS-H-paniculata_contig11877:1816..2209Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11877 1817..2209 -
1691480661.202556-CDS-H-paniculata_contig11877:1816..22091691480661.202556-CDS-H-paniculata_contig11877:1816..2209Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11877 1817..2209 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11877.1202.1

>prot_H-paniculata_contig11877.1202.1 ID=prot_H-paniculata_contig11877.1202.1|Name=mRNA_H-paniculata_contig11877.1202.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=131bp
MVESLMYASTETRPDTAYAVHQAARRMEDPCRENFSTCKRIFRYLSAASH
PGITFGGKSNGHSLEGFLDTDWAEDVEDRKSTTGYVFKLSDGAIGWCSRK
QQLVTWSSTEAKYVATGEVKKETVYLRGLL*
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mRNA from alignment at H-paniculata_contig11877:1571..3844-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11877.1202.1 ID=mRNA_H-paniculata_contig11877.1202.1|Name=mRNA_H-paniculata_contig11877.1202.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2274bp|location=Sequence derived from alignment at H-paniculata_contig11877:1571..3844- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTCCGTACGAAAAATGGCACGGCACGGCACCAAAGTTGGGCCACCTTCA CGTCTTCCGCTGCACGGCGTATGTTATGTTCCAGTCGCAGCAGAGAAGCA AGCTCGACGACAGAGCATGGGCGGGGATGTTTCTGGGGTACGACGAGGAC AGCCCGAGTTATCGCATATATCATATACAACCCGGAAAACAAGAGCGTCC AGTTGAGCAGGAACGTGAGATTTGACGAAGAGGACTTCGTAACCGGTCAT CGCGGACAGCAGGAGCACGACGGGACGCGCAACATGGAAGACGAATTTTC AACTCCGCCAGTCACGCCAGCGGTTACTCGATGCCGCGCCCAAGGCGAGC AAGGAAGCGTAACTAACACAGAAGACCGGACGTCGGCGTCGCAAATGCCG CCCATATTGTTAACACATTCGCTGCCAGCCACCAGCGCAAACCCGTTCAG TGTCTTGAGCGATGACGATGATGGCGAAAGTAACGGCGACTCCAAGATGA AGGATACGGAGCCTGCAGTCGAAGACGCACCATCAGCGGGGACAGCAGCA CCAGCGTCGCGGGGGAACACTACGAGGCAGTCAGGGACGGAGGTGCGGCG TCCGCGAGATCGGTCACCAATACGAACACGGGCAAGAGCGAGGGAAAACC GCGAAGAAGATCCAGGCGCTACCACGCGCGTGGCAAAAGTGGAAGGCACT GGTAACCTCACAGAGATGGTATCTAAGGGGGAGCCGAAATCCGCGGCAGA AGCATTAAAGGGCCCAGAGGCGGAAAAATGGCGCGCGGCAATGAAGGAAG AGTGGGGGGCGTTGGTGAGAAATGGAACATGGGAAAGCGAGGACCCGGGG AGGTTACCGGCAGGGCAGAAGGCGATTCGTATGAAATGGATCTTCAAGCG CAAGCTGAAGGAGGACGGCAGCGTGGCACGCTGCAAAGCGCGACTGGTGG CTCAAGGGTTTTCACAGGTGGAGGGTGAAGATTTCTTTGAAAATAATGCG TAGATGCGGCGTATTTGAACGTCCCGGTAGAAGAAGAGCTGTTTGTTAAA CTACCCCCCGAGTTTTCCCCTTTCTCTCGAGACGTACGGTTTGTGCGTCG CCTGCGCAAAAGCCTGTATAGCCTCAAGCAGGGCGGCCCTAACTGGAATA GCATTCTTGACCATTTTCTTGTTGAGATAGGACTCAACCGTTCCACTACC GACCCATGCTTGTACTTCTCTCGCGACGACGGGGGAGAGACAGACATTAT CGTGGCTGTCTATGATGACGACCTGGTCATTGTTGGCCGTCGTAAGAAAG TAGACGAGTTCAAACATGACATAAGTCAGCATTTTAGGATGAAGGACTTG GGCTCTCTCTCGCGCATGTTGGGAATAGAAGGACGAGGTGACCACCCTAA TAGTACCATAACAATCTTGTAGGGTAGCTACTTTCGCGAGGTACTGAAAA GATACGGTTTTGACGAGTGTCGAGGGGTACCCACCCCTGCAGAGGGAAAA GCGAAGATTTTGGCACCAGAGTCGGCCGACAAGGCGTCCGAACCGAAATC TCTTGGGGCTGTACTGTCGGACATAGGCGCATGAATACAAAAATGCAGCA AGGGAAGAAGTGACAATTCAACTGAATACAGAGGCATGGTAGAATCACTC ATGTATGCCTCGACAGAAACTAGACCTGATACAGCATACGCGGTACACCA AGCAGCACGTCGTATGGAGGACCCATGTCGGGAAAACTTCAGTACATGCA AGCGCATTTTTCGTTATCTCAGTGCTGCGTCTCACCCCGGCATTACGTTC GGTGGTAAGAGTAATGGTCACAGTCTGGAAGGATTCCTTGATACCGATTG GGCGGAAGATGTCGAGGACCGAAAGTCCACAACAGGATATGTTTTCAAGC TGAGCGATGGTGCGATAGGTTGGTGCTCTAGGAAGCAACAGTTAGTCACG TGGTCCAGTACAGAGGCAAAGTACGTTGCCACGGGAGAAGTGAAAAAGGA GACGGTATATCTTAGGGGTTTACTATGATCGATAGGTTTCGGACACAGAG GGAGCACGACATTGTTCGAGGACTATAAATCAGCGATTAGTCTTAGTAAG GGATCTGGCGCACACTGCAGGACAAAGCATATCGGAGTGCGCTGGCACAA AATTCGAGAGTGGACTCGGGGAGGAGTATTGACATTGAAATACGTGCAGA CCGGCGACCAACTCGCTGACATTTTAACGAAAGAACTAAGCAGGCTAGAG TTTCAGAGACTGAGAAATGTACTC
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Coding sequence (CDS) from alignment at H-paniculata_contig11877:1571..3844-

>mRNA_H-paniculata_contig11877.1202.1 ID=mRNA_H-paniculata_contig11877.1202.1|Name=mRNA_H-paniculata_contig11877.1202.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=786bp|location=Sequence derived from alignment at H-paniculata_contig11877:1571..3844- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTAGAATCACTCATGTATGCCTCGACAGAAACTAGACCTGATACAGC
ATACGCGGTACACCAAGCAGCACGTCGTATGGAGGACCCATGTCGGGAAA
ACTTCAGTACATGCAAGCGCATTTTTCGTTATCTCAGTGCTGCGTCTCAC
CCCGGCATTACGTTCGGTGGTAAGAGTAATGGTCACAGTCTGGAAGGATT
CCTTGATACCGATTGGGCGGAAGATGTCGAGGACCGAAAGTCCACAACAG
GATATGTTTTCAAGCTGAGCGATGGTGCGATAGGTTGGTGCTCTAGGAAG
CAACAGTTAGTCACGTGGTCCAGTACAGAGGCAAAGTACGTTGCCACGGG
AGAAGTGAAAAAGGAGACGGTATATCTTAGGGGTTTACTATGAATGGTAG
AATCACTCATGTATGCCTCGACAGAAACTAGACCTGATACAGCATACGCG
GTACACCAAGCAGCACGTCGTATGGAGGACCCATGTCGGGAAAACTTCAG
TACATGCAAGCGCATTTTTCGTTATCTCAGTGCTGCGTCTCACCCCGGCA
TTACGTTCGGTGGTAAGAGTAATGGTCACAGTCTGGAAGGATTCCTTGAT
ACCGATTGGGCGGAAGATGTCGAGGACCGAAAGTCCACAACAGGATATGT
TTTCAAGCTGAGCGATGGTGCGATAGGTTGGTGCTCTAGGAAGCAACAGT
TAGTCACGTGGTCCAGTACAGAGGCAAAGTACGTTGCCACGGGAGAAGTG
AAAAAGGAGACGGTATATCTTAGGGGTTTACTATGA
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