mRNA_H-paniculata_contig4868.12000.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4868.12000.1
Unique NamemRNA_H-paniculata_contig4868.12000.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4868.12000.1 vs. uniprot
Match: A0A6H5J9Z0_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9Z0_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 9.340e-28
Identity = 68/139 (48.92%), Postives = 85/139 (61.15%), Query Frame = 1 
Query:  286 AAPVGFRAIGVKVMP--WKKPDNTKCHICADKFTWLNHRHRCRNCQEYVCNPCALSRKVLRAYTPPKRVCDICIDKYWAPKKPADAAATSSNDYKDQKRGRERGLSLTLAGE--SFRVDGPITAPMSVSPSTPMLEGAF 690
            A P GFR I +++ P  WK  D TKC++C D+FTWLNHRH+CRNC + VCN CA SRKV+RA T PKRVCD CI   W P+ PA     ++      K   +R +SLT++    S  VD   TAP+S  P TP   G F
Sbjct:   33 ATPRGFREIPLQITPSTWKT-DLTKCNVCGDRFTWLNHRHKCRNCWQAVCNSCAKSRKVIRARTAPKRVCDTCIQNCWTPRTPAVTKPAAAAGSVVTKADGDRRVSLTVSTSDGSCPVDATATAPLS--PGTPAAAGFF 168
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BLAST of mRNA_H-paniculata_contig4868.12000.1 vs. uniprot
Match: D7G5L4_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5L4_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 1.200e-14
Identity = 35/58 (60.34%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:  286 AAPVGFRAIGVKVMP--WKKPDNTKCHICADKFTWLNHRHRCRNCQEYVCNPCALSRK 453
            A P GFR I +++ P  WK  D TKC++C D+FTWLNHRH+CRNC + VCN CA SRK
Sbjct:   25 ATPRGFREIPLQITPSTWKT-DLTKCNVCGDRFTWLNHRHKCRNCWQAVCNSCAKSRK 81
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4868.12000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J9Z0_9PHAE9.340e-2848.92FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G5L4_ECTSI1.200e-1460.34FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4868contigH-paniculata_contig4868:9319..13259 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFYVE zinc finger
Ec32 orthologEc-16_002350.1
Exons4
Model size2127
Cds size1233
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4868.12000.1prot_H-paniculata_contig4868.12000.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4868 9484..12530 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930440.154086-UTR-H-paniculata_contig4868:9318..94831622930440.154086-UTR-H-paniculata_contig4868:9318..9483Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4868 9319..9483 +
1691481293.1778865-UTR-H-paniculata_contig4868:9318..94831691481293.1778865-UTR-H-paniculata_contig4868:9318..9483Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4868 9319..9483 +
1622930440.2440019-UTR-H-paniculata_contig4868:12530..132591622930440.2440019-UTR-H-paniculata_contig4868:12530..13259Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4868 12531..13259 +
1691481293.2285051-UTR-H-paniculata_contig4868:12530..132591691481293.2285051-UTR-H-paniculata_contig4868:12530..13259Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4868 12531..13259 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930440.1823719-CDS-H-paniculata_contig4868:9483..95071622930440.1823719-CDS-H-paniculata_contig4868:9483..9507Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4868 9484..9507 +
1691481293.1868684-CDS-H-paniculata_contig4868:9483..95071691481293.1868684-CDS-H-paniculata_contig4868:9483..9507Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4868 9484..9507 +
1622930440.198765-CDS-H-paniculata_contig4868:9567..97451622930440.198765-CDS-H-paniculata_contig4868:9567..9745Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4868 9568..9745 +
1691481293.194805-CDS-H-paniculata_contig4868:9567..97451691481293.194805-CDS-H-paniculata_contig4868:9567..9745Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4868 9568..9745 +
1622930440.2161708-CDS-H-paniculata_contig4868:10402..104881622930440.2161708-CDS-H-paniculata_contig4868:10402..10488Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4868 10403..10488 +
1691481293.202523-CDS-H-paniculata_contig4868:10402..104881691481293.202523-CDS-H-paniculata_contig4868:10402..10488Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4868 10403..10488 +
1622930440.2297304-CDS-H-paniculata_contig4868:11585..125301622930440.2297304-CDS-H-paniculata_contig4868:11585..12530Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4868 11586..12530 +
1691481293.2125523-CDS-H-paniculata_contig4868:11585..125301691481293.2125523-CDS-H-paniculata_contig4868:11585..12530Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4868 11586..12530 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4868.12000.1

>prot_H-paniculata_contig4868.12000.1 ID=prot_H-paniculata_contig4868.12000.1|Name=mRNA_H-paniculata_contig4868.12000.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=411bp
MSLSSIEVQQQQQQQQQQQQQQQQQQQQLGHAKASSPIAGAAPVGFRAIG
VKVMPWKKPDNTKCHICADKFTWLNHRHRCRNCQEYVCNPCALSRKVLRA
YTPPKRVCDICIDKYWAPKKPADAAATSSNDYKDQKRGRERGLSLTLAGE
SFRVDGPITAPMSVSPSTPMLEGAFFAADGEGDIARVPPPLRSSSPILSP
SLLTPTLEEEGESVSAVMPMSPPLTCGTCGTCGTSGAFFDNEDDREEAAV
DMNYDGDDEASKEKTVRGQCPPLQGSIATTNELPKEPEVQKVQKQQEDGE
HCDSQLASVVQDEAVEEGEEPSVAAAATWAVAHPAGLVDATVFLLTLAAA
ALPSVMRQAASSSDGTEDGDDKREGDGLIEGQMYSFAVGLGWGVVAASVG
FGFAMLLRKL*
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mRNA from alignment at H-paniculata_contig4868:9319..13259+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4868.12000.1 ID=mRNA_H-paniculata_contig4868.12000.1|Name=mRNA_H-paniculata_contig4868.12000.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3941bp|location=Sequence derived from alignment at H-paniculata_contig4868:9319..13259+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACCGTTCCCCCCTACCCATGTTATTCATACCATCTATCCTCGCCTTCC
ATTTCGATATCCGTAGCCGTCTACCACTCCTTGTCTTGGACTATCTGGTA
AATAAAGGTTCGGGGACTTGTGCACTGACCATCTAAGCTAGCTGCGTCGG
TGTCTTTTGTGAAACATGAGCCTCAGCAGTATTGAAGTGGCATCTGGTGC
TCTAGGTAAGGATTCCCTTGATGGGCAACGGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAACAGCAACAGCAGCAACAGCAGCAGCAA
CAGCAGCAGCTGGGTCATGCGAAAGCGTCAAGCCCTATCGCTGGCGCAGC
CCCGGTGGGGTTTCGAGCTATAGGGGTGAAGGTCATGCCGTGGAAAAAGC
CAGACAACACCAAGTGTCACATCTGCGGTGAGTACCGTGCAGACAGTGTA
GATGGTCGACTGGTAGAATGCATCATGAAACTGGGAAGGTCATGAGTGAA
ATTCCCTGCCTGTGTTCATTTCTTCGTGGCGTTGCCATAGAGATTCATAC
GTACACTTTGCCTTGTATGTGTCTCATCCAAGGTTGTGTTACATGGGAGA
ACGACTACTTGTAGCTGGAGATTGCACACAGCATATCAACTCGCGCCGTC
CGTGTAAGGAAGTAGCGGCAAGCCGCCAAAAATTATTAACCGATAAAAGG
AGCAACGTCTGAATAGTCCTCTGTACCATAGATCCCTCGCGCGTACCCCC
TCATAGGGCTACTGTTTGTAGCACTCAAGTCCGAGTACTCTCGCCCCTCC
AGCACCGTGCGCATACTATCTTGTGGTATGCGAATGTATGCGCCTTCCAA
CACCGTGCGCATACTATCTTGTGGTTCGCGAATGTATGCTCTCTTTTCAC
GAGTGGAACAGGTACATCGTGCCTCTACTTCATATCTCACCAATAATATT
CTCTCTATTTCCAAACGGCTTCTATTGTGCCCGTAATTGTATACGCAACT
ATAAAAGATATGAGATGTTCTTGTTCACGTGTCCCCTCCCCACCTCCTTT
TCTGGCACTTACGCTTGTGCTCTTCGTTAACCAGCGGACAAGTTCACCTG
GCTCAACCACCGTCACAGGTGCCGCAACTGCCAGGAGTATGTCTGCAACC
CATGCGCGCTCAGTCGTAAGGTGAGACGAGTAACTTCCAGAATTTGATTC
TCCCACCTGCCCCAAGTCCGACCGGTTCAGCTGGGCGCGATTATCTCTAC
CGTGTTTTTGTCACCGTCTGAGTGGTCATGGTATGTGAGGGCAGTGAGGG
ACTGAAGAGCAGGCAAACTATGACCCAGTTTGTATAACGAAAGCGGCGGA
TTAGAAACACTTGATCATGTGTGTCGTACGCATCTCGCTCGAAGATATGC
CGAATATAGTATCAGGTTCCTCTGAGCGAGTGCTTTTTAGGTGGAAGCCG
AAACGTGTGAGACGTGGAAATCCAATAATTATTGATGGCACGAGAACATT
GCGCATAATCCGAGATTCAGAGTAGATTGTTTCTGACGAAAACATATCCA
GGTCAAAATAGCGGTTGGTCTTTTTCATTTCGAATAATCGCATGCAGTTT
TGCTGCTACTTCTGCAGACGCCGGGACTTTGCTGGAGAAGATGGGATTGC
AAACGCGGACTAGTTCATAGAAAAATCATGGCCCAGTTGAAGACGCCAGC
CTTCGTTCAACGTGCACTCGTATTATGTTTAGCTACGAAGTCCCGGTGTC
TTGGCACTATTTGACCGTATCACTCATAACAAACCATCATTGCCCATGAG
TCGCTGATTAGCACCCAAACGGGAATCCATGGGCACCCGGCATGACCTAT
GATCACACGCGTGAGCAACCGTTATTCCTCACCGGTGACTGAAGGCGCCG
TCATGTGTGTTCGTCTAGAGTTCGAGTCATGGCGACTCGAGGGCGACCGA
CCCACTTCGAACAGGAAACGAATTCGTGATAATTCATGAAATGTTGGAAA
TTCAGCAAGGAGTTCTTTTCCCCCAGGCCTACATTCGTTTTATCTCTGAT
GTGTAAAGTAAATCTGCTTGGTGTGGGTCGAGTATTTCGGTTCAGGAAGC
GATACACCGAGATGGTGTCGAAATATCATCACGTCACGACGTGGTCTTGC
CGTTGAGACTAATCCATTCAAATAGATCAATATCAAACAATGTGAGAACT
CGACTTTAGAAGAAGGAACACCAACATGAGCTACGATTGTTTCATTGGTC
CGCACTCGTCGCAACAGGTCCTTCGTGCTTACACACCACCCAAGCGCGTT
TGCGACATCTGTATCGATAAGTATTGGGCGCCCAAGAAACCCGCAGACGC
TGCAGCGACAAGCTCTAATGATTACAAGGACCAGAAGCGCGGGCGTGAGC
GAGGCCTCTCCCTAACGTTGGCTGGTGAAAGCTTCCGAGTAGATGGACCT
ATCACGGCGCCGATGTCGGTGTCACCTTCGACGCCGATGCTGGAAGGGGC
GTTTTTCGCCGCCGACGGTGAAGGTGATATCGCACGTGTTCCCCCCCCTC
TCCGTAGTTCATCCCCGATCTTATCGCCCTCTCTTCTTACTCCTACACTA
GAGGAAGAGGGGGAGTCGGTGTCAGCTGTGATGCCCATGTCGCCTCCTCT
GACATGCGGCACTTGTGGAACTTGTGGAACCTCGGGAGCGTTCTTCGACA
ACGAAGATGACCGCGAAGAAGCTGCCGTCGACATGAACTACGATGGAGAT
GACGAGGCATCGAAGGAGAAGACGGTTCGTGGGCAGTGCCCCCCGCTCCA
GGGATCAATCGCCACCACCAACGAGCTTCCGAAAGAGCCAGAAGTGCAGA
AGGTACAGAAGCAGCAGGAGGATGGAGAGCACTGCGATAGCCAACTCGCG
AGTGTAGTGCAGGATGAAGCCGTGGAGGAAGGGGAAGAACCGTCAGTGGC
GGCGGCGGCGACTTGGGCGGTAGCACACCCGGCGGGGCTTGTTGATGCCA
CAGTTTTTCTCTTGACACTGGCGGCGGCCGCTCTTCCGTCGGTCATGAGG
CAGGCCGCGTCTTCCTCGGATGGTACTGAAGACGGTGATGACAAGAGGGA
GGGGGATGGGTTGATTGAAGGTCAGATGTATTCCTTCGCTGTGGGGCTTG
GATGGGGTGTGGTTGCCGCGAGTGTCGGATTCGGCTTCGCGATGCTTCTC
AGGAAGCTGTGATGGATGAGAAGACGCAATCTGACACGAAATTGTCTTCT
GGCTCTTTTGTCCGGGGAGGCGCCTCTGGGAGCGCGCCTAGGACAACTCC
TCGACATTAGTTCTAGTCGTATGTGTGTCCAAGGGTTTTTCACAAGCGGA
AATTGGACGTAAATGTGAAGATATGAAGGGGTGTATGTGTGTTTAGATTA
CTTTTTTTCCCTGCATCTGTCCTGTATCTTTTTGGATTTGTGAAATTGTC
GTGGGTCGACCCCAAACCACTGGGGGATCCTCAACGCATGTATGTAGATT
TGATCTTCACCTGAAGTAGTAGATATTTTTCTGGCGTTCAGCATTAAGAT
ATAGTGCTGGCATCGAGTTAGGTGGGGAATCAAGCGTAGTGGCGTGAATG
TCTTGGGAATTCTATATGTACGTGAGCTCTGATTTGTCAACTGTAGTAAA
AAAAGATGAACCATGAACATTGGTTCGATCATGAGCTCCGCACGTGGTGA
CGATTTTCACCTCCGTGTGTGCATTGTCGAGTCTGACGAAATGTTAGGTA
TCTTGAGGTGTTGGGTGTTTTTTGAGTGTTTTATCTGTTAAGTGTAGCAG
TGGAGGTAGATAGTACTTGAAAAGCGGTGTGGAGGAACTACGGTGAATGA
ATACAAAAAGTTACCATAATAGAGGAGTTGTGTTTCGTGTATTTTTCTCT
ATTCGTCATCTGACCGTCGTGCAGAATGACGAACAGACAGA
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Coding sequence (CDS) from alignment at H-paniculata_contig4868:9319..13259+

>mRNA_H-paniculata_contig4868.12000.1 ID=mRNA_H-paniculata_contig4868.12000.1|Name=mRNA_H-paniculata_contig4868.12000.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2466bp|location=Sequence derived from alignment at H-paniculata_contig4868:9319..13259+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCCTCAGCAGTATTGAAGTGATGAGCCTCAGCAGTATTGAAGTGCA
GCAGCAGCAGCAGCAGCAGCAACAGCAACAGCAGCAACAGCAGCAGCAAC
AGCAGCAGCTGGGTCATGCGAAAGCGTCAAGCCCTATCGCTGGCGCAGCC
CCGGTGGGGTTTCGAGCTATAGGGGTGAAGGTCATGCCGTGGAAAAAGCC
AGACAACACCAAGTGTCACATCTGCGCAGCAGCAGCAGCAGCAGCAGCAA
CAGCAACAGCAGCAACAGCAGCAGCAACAGCAGCAGCTGGGTCATGCGAA
AGCGTCAAGCCCTATCGCTGGCGCAGCCCCGGTGGGGTTTCGAGCTATAG
GGGTGAAGGTCATGCCGTGGAAAAAGCCAGACAACACCAAGTGTCACATC
TGCGCGGACAAGTTCACCTGGCTCAACCACCGTCACAGGTGCCGCAACTG
CCAGGAGTATGTCTGCAACCCATGCGCGCTCAGTCGTAAGCGGACAAGTT
CACCTGGCTCAACCACCGTCACAGGTGCCGCAACTGCCAGGAGTATGTCT
GCAACCCATGCGCGCTCAGTCGTAAGGTCCTTCGTGCTTACACACCACCC
AAGCGCGTTTGCGACATCTGTATCGATAAGTATTGGGCGCCCAAGAAACC
CGCAGACGCTGCAGCGACAAGCTCTAATGATTACAAGGACCAGAAGCGCG
GGCGTGAGCGAGGCCTCTCCCTAACGTTGGCTGGTGAAAGCTTCCGAGTA
GATGGACCTATCACGGCGCCGATGTCGGTGTCACCTTCGACGCCGATGCT
GGAAGGGGCGTTTTTCGCCGCCGACGGTGAAGGTGATATCGCACGTGTTC
CCCCCCCTCTCCGTAGTTCATCCCCGATCTTATCGCCCTCTCTTCTTACT
CCTACACTAGAGGAAGAGGGGGAGTCGGTGTCAGCTGTGATGCCCATGTC
GCCTCCTCTGACATGCGGCACTTGTGGAACTTGTGGAACCTCGGGAGCGT
TCTTCGACAACGAAGATGACCGCGAAGAAGCTGCCGTCGACATGAACTAC
GATGGAGATGACGAGGCATCGAAGGAGAAGACGGTTCGTGGGCAGTGCCC
CCCGCTCCAGGGATCAATCGCCACCACCAACGAGCTTCCGAAAGAGCCAG
AAGTGCAGAAGGTACAGAAGCAGCAGGAGGATGGAGAGCACTGCGATAGC
CAACTCGCGAGTGTAGTGCAGGATGAAGCCGTGGAGGAAGGGGAAGAACC
GTCAGTGGCGGCGGCGGCGACTTGGGCGGTAGCACACCCGGCGGGGCTTG
TTGATGCCACAGTTTTTCTCTTGACACTGGCGGCGGCCGCTCTTCCGTCG
GTCATGAGGCAGGCCGCGTCTTCCTCGGATGGTACTGAAGACGGTGATGA
CAAGAGGGAGGGGGATGGGTTGATTGAAGGTCAGATGTATTCCTTCGCTG
TGGGGCTTGGATGGGGTGTGGTTGCCGCGAGTGTCGGATTCGGCTTCGCG
ATGCTTCTCAGGAAGCTGTGAGTCCTTCGTGCTTACACACCACCCAAGCG
CGTTTGCGACATCTGTATCGATAAGTATTGGGCGCCCAAGAAACCCGCAG
ACGCTGCAGCGACAAGCTCTAATGATTACAAGGACCAGAAGCGCGGGCGT
GAGCGAGGCCTCTCCCTAACGTTGGCTGGTGAAAGCTTCCGAGTAGATGG
ACCTATCACGGCGCCGATGTCGGTGTCACCTTCGACGCCGATGCTGGAAG
GGGCGTTTTTCGCCGCCGACGGTGAAGGTGATATCGCACGTGTTCCCCCC
CCTCTCCGTAGTTCATCCCCGATCTTATCGCCCTCTCTTCTTACTCCTAC
ACTAGAGGAAGAGGGGGAGTCGGTGTCAGCTGTGATGCCCATGTCGCCTC
CTCTGACATGCGGCACTTGTGGAACTTGTGGAACCTCGGGAGCGTTCTTC
GACAACGAAGATGACCGCGAAGAAGCTGCCGTCGACATGAACTACGATGG
AGATGACGAGGCATCGAAGGAGAAGACGGTTCGTGGGCAGTGCCCCCCGC
TCCAGGGATCAATCGCCACCACCAACGAGCTTCCGAAAGAGCCAGAAGTG
CAGAAGGTACAGAAGCAGCAGGAGGATGGAGAGCACTGCGATAGCCAACT
CGCGAGTGTAGTGCAGGATGAAGCCGTGGAGGAAGGGGAAGAACCGTCAG
TGGCGGCGGCGGCGACTTGGGCGGTAGCACACCCGGCGGGGCTTGTTGAT
GCCACAGTTTTTCTCTTGACACTGGCGGCGGCCGCTCTTCCGTCGGTCAT
GAGGCAGGCCGCGTCTTCCTCGGATGGTACTGAAGACGGTGATGACAAGA
GGGAGGGGGATGGGTTGATTGAAGGTCAGATGTATTCCTTCGCTGTGGGG
CTTGGATGGGGTGTGGTTGCCGCGAGTGTCGGATTCGGCTTCGCGATGCT
TCTCAGGAAGCTGTGA
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