mRNA_H-paniculata_contig4866.11996.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4866.11996.1
Unique NamemRNA_H-paniculata_contig4866.11996.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4866.11996.1 vs. uniprot
Match: D7FU23_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU23_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 2.440e-14
Identity = 40/69 (57.97%), Postives = 50/69 (72.46%), Query Frame = 1 
Query:    1 ESIYLSLHDTVTDAVSTGIQVQYSCITKASSSHFFNYVGMGLTTVKKLDGMTTASYKALSTSSAIFKDQ 207
            ES+++ L D+ T  +S GIQV YSC+T  SSSH F Y+G+GLT   KL    TASYKAL TSSAI+KD+
Sbjct:  169 ESVFMFLRDSDTGILSAGIQVAYSCMTSESSSHVFTYMGIGLTKEDKLYEDDTASYKALETSSAIYKDK 237
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BLAST of mRNA_H-paniculata_contig4866.11996.1 vs. uniprot
Match: D7FXH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXH8_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 6.510e-9
Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:   43 VSTGIQVQYSCITKASSSHFFNYVGMGLTTVKKLDGMTTASYKALSTSSAIFKDQ 207
            VST +Q+ YSCIT AS+SH FN VG+GLT   K      +SYKA+S +S ++KDQ
Sbjct:  202 VSTAVQLSYSCITSASTSHVFNSVGIGLTNQIKYAADDVSSYKAVSINSGVYKDQ 256
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4866.11996.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FU23_ECTSI2.440e-1457.97Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FXH8_ECTSI6.510e-954.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4866contigH-paniculata_contig4866:1458..3473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size208
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930439.8551857-CDS-H-paniculata_contig4866:1457..15711622930439.8551857-CDS-H-paniculata_contig4866:1457..1571Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4866 1458..1571 +
1691481293.0745084-CDS-H-paniculata_contig4866:1457..15711691481293.0745084-CDS-H-paniculata_contig4866:1457..1571Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4866 1458..1571 +
1622930439.8697872-CDS-H-paniculata_contig4866:3380..34731622930439.8697872-CDS-H-paniculata_contig4866:3380..3473Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4866 3381..3473 +
1691481293.0880716-CDS-H-paniculata_contig4866:3380..34731691481293.0880716-CDS-H-paniculata_contig4866:3380..3473Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4866 3381..3473 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4866.11996.1prot_H-paniculata_contig4866.11996.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4866 1458..3473 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4866.11996.1

>prot_H-paniculata_contig4866.11996.1 ID=prot_H-paniculata_contig4866.11996.1|Name=mRNA_H-paniculata_contig4866.11996.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=69bp
ESIYLSLHDTVTDAVSTGIQVQYSCITKASSSHFFNYVGMGLTTVKKLDG
MTTASYKALSTSSAIFKDQ
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mRNA from alignment at H-paniculata_contig4866:1458..3473+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4866.11996.1 ID=mRNA_H-paniculata_contig4866.11996.1|Name=mRNA_H-paniculata_contig4866.11996.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2016bp|location=Sequence derived from alignment at H-paniculata_contig4866:1458..3473+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGAGCATATATTTGTCCCTGCATGATACAGTAACTGACGCCGTGTCAAC
TGGGATTCAGGTGCAATACAGTTGCATAACGAAGGCATCGAGCAGTCACT
TCTTCAACTATGTGGTGAGTTTTGTTATTGATGATGCTACGGTTCGTTGG
TTTCATCTTGTCTCAGGGTACTTATAGAACATGATAAAATAAAATAAATA
GTCATGAGATAAGGGCCCATTCTCGGGTTCAATCCGGAATAGTTTTACAA
CAAGTGTAGCATATATGTATAATTGTACTAGACATGGCACCCTGCATTCT
TCGCCGCAGCGCACGACGCTAGCTTCCTTCGGTATAACGGTAGTCGCATC
TCCTGCTTCCAATTTGGAAGGAAGAACCTCAATCACCGTGAATACAGAGG
CCACAACAAATTGCTGACACTAGGTATCATCTGGTAGACGTTTCAGGAGA
AGAAGCCGATAAGAGTGTAATTAGCCGTTCAAATATGAAAACAACCAACA
GTATTTGGTATATAAACGAATTATGGGTGACTGATCAGAAGTGTGTTTTC
AATCCCCATGTTTGCGTTGCGGTTCGTTGTGGATGATGCCTCTTGTTCCA
ATTAAGGTGCTTGGTATTTTTATTTGGTGGCCCAGCTCACAAAGTTGAAT
TTTCTTGCGTCTGTAGGAGCCGCCGTTAGTCCCATGGAGGTTGGATCATG
CAGCTTCGACAGAGACATGACGTTACCGAGTAAACTCCCTCTGTCTCATA
TGTCTGTCCGGTTTGGCGCCATGATGCATAACCTTCTACCCCTTGGGTTA
TACACCACGAACTATATATCATTCGAAAGCCCTTGATTTCCGCTATCTCC
TGGATGTTTTCAATATACAATCCGATTTGTTAACATTCCGAAAGTCCAAG
GTGAAAAAAAACGGCCCTTTTTTTGTCGGAAACTTGTAAAAAACCCGGGA
CTTCTTTTTTCGGTGTATTTTTTCAGTTGCAGCCTCCCTATACCACATAC
AACACCATGGCAAGCCCTCCCAGCCCACCGCCGAGCCCTGCCAGTCGAAC
GGTGAACCTTAGGGGGGCGGCGCCTAGTCCTCCAAGCTCATCATTACACC
CTGGAAGCCCATTCCATCTTATGAAACACGGAGAACTCTCTCCAGGATCT
CGTTACGGATTGGCATTACGGTGTGCGATGGCGTTGCCACCCGGGCAGAC
CAAGATGCCCTATCGTATATACAAAACGCTCGCGGATAAGTACGGGGACT
GGCAGGGCTCGGCGGTGAGCTGGGAGGGTTTGTCATGGTGCTGTGTGTGG
TGTAGGGGGGCTGCAACTGAAAAAATACACCGAAAAAAGAAGTCCCGGGT
TTTTTACAAGTTTCCTACCCCAAAAAAAAGGGCCGTTTTTTTTTCACCTT
GGACTTTCGGGATGTTAACAATCGGATTGTATATTGAAAACATCCAGGAG
ATAGCGGAAATCAAGGGCTTTCGAATGATATATAGTTCGTGGTGTATAAC
CCAAGGGGTAGAAGGTTATGCATCATGGCACCAAACCGGACAGACATATG
AGACAGAGGGAGTACATGTGTACATTTCTGCCTTTCTTTACAGAAACCGA
AACGACTCTTGGGGAGAGTAACGGTCACTCTCCCCAACATTCTGAAAGGT
TTACTTCCAGCGGAAAGAACCTCAACGTAAAGCCAGTTGCTTTCTTCTGT
GAGCCAGCAGTTTTACAAGCCTCAAATAGAATTATGATGCACAGCCAACC
GTCAGATTTCAGCTCGGGATGAAACCGGCTATGACAAACCGCTGAGCGAG
CCCCCAAGTGTATGTCAATTCGTGCCCAACTGGCTACACTCTTGTAGTAG
CTAATAGGTTTGTATTTGGTGCTGCTTGTGCCGCTGTGCGGGGTGGGCAC
TTTGCGTGTTCGGCTTGGATCAGGGAATGGGTTTAACCACGGTAAAAAAA
CTGGATGGCATGACAACTGCCTCGTACAAGGCGCTGTCGACATCGTCAGC
AATTTTTAAAGATCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig4866:1458..3473+

>mRNA_H-paniculata_contig4866.11996.1 ID=mRNA_H-paniculata_contig4866.11996.1|Name=mRNA_H-paniculata_contig4866.11996.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at H-paniculata_contig4866:1458..3473+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGAGCATATATTTGTCCCTGCATGATACAGTAACTGACGCCGTGTCAAC
TGGGATTCAGGTGCAATACAGTTGCATAACGAAGGCATCGAGCAGTCACT
TCTTCAACTATGTGGAGAGCATATATTTGTCCCTGCATGATACAGTAACT
GACGCCGTGTCAACTGGGATTCAGGTGCAATACAGTTGCATAACGAAGGC
ATCGAGCAGTCACTTCTTCAACTATGTGGGAATGGGTTTAACCACGGTAA
AAAAACTGGATGGCATGACAACTGCCTCGTACAAGGCGCTGTCGACATCG
TCAGCAATTTTTAAAGATCAGGGAATGGGTTTAACCACGGTAAAAAAACT
GGATGGCATGACAACTGCCTCGTACAAGGCGCTGTCGACATCGTCAGCAA
TTTTTAAAGATCAG
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