prot_H-paniculata_contig4865.11995.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4865.11995.1
Unique Nameprot_H-paniculata_contig4865.11995.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length164
Homology
BLAST of mRNA_H-paniculata_contig4865.11995.1 vs. uniprot
Match: D7G9E0_ECTSI (PS II complex 12 kDa extrinsic protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G9E0_ECTSI)

HSP 1 Score: 231 bits (588), Expect = 2.680e-75
Identity = 127/165 (76.97%), Postives = 145/165 (87.88%), Query Frame = 0
Query:    1 MKFSSAVAVVACVGSASAFVPSLAPV-RVSSQTT-MSAQQNVPQGRGEFLKNAASAAALFGVVAGAAAPVVAEVDNPIVPFLGGGDKIDVNNANVRAYIKLPGMYPNAAGKIVSNGPYSSVSDIYNIKGLTNEEKAAMKKHESRFVTMDPQAMYTIDRINNGLYR 163
            MKF++ VAV+ACVGSASAFVP   P  R+S++TT MSA+   P  RG+FLK+AA AAAL G+    AAP +AEVDNP+VPFLGGGDKIDVNNANVRAYIKL GMYP+AAGKIVSNGPYSSVS+IY+IKGL+NEEKAA+KKHESRF+TMDPQAMYTIDRINNGLYR
Sbjct:    1 MKFTT-VAVLACVGSASAFVPHALPAARMSARTTTMSAES--PASRGDFLKSAAGAAALLGL----AAPALAEVDNPVVPFLGGGDKIDVNNANVRAYIKLQGMYPSAAGKIVSNGPYSSVSEIYSIKGLSNEEKAAIKKHESRFITMDPQAMYTIDRINNGLYR 158          
BLAST of mRNA_H-paniculata_contig4865.11995.1 vs. uniprot
Match: A0A836CCI8_9STRA (PS II complex 12 kDa extrinsic protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCI8_9STRA)

HSP 1 Score: 187 bits (476), Expect = 2.690e-58
Identity = 101/163 (61.96%), Postives = 127/163 (77.91%), Query Frame = 0
Query:    1 MKFSSAVAVVACVGSASAFVPSLAPVRVSSQTTMSAQQNVPQGRGEFLKNAASAAALFGVVAGAAAPVVAEVDNPIVPFLGGGDKIDVNNANVRAYIKLPGMYPNAAGKIVSNGPYSSVSDIYNIKGLTNEEKAAMKKHESRFVTMDPQAMYTIDRINNGLYR 163
            MK + A+ + A  G A AFV   A VR S+Q +M+AQ   P  R  FLK+AA+AA    V    AAP +AE+DNP+VPFLGGGDK+D+NNANVRAYIK+PGMYP  AGK+VSNGPY++V+D+YNIKGL+ +EK+ +KK+ESRFVT++PQ MY IDRINNGLYR
Sbjct:    1 MKVTGAIVLAAACG-AQAFVAPSAGVR-STQLSMTAQ---PVDRMAFLKSAATAAV---VAVSVAAPALAEIDNPVVPFLGGGDKVDLNNANVRAYIKMPGMYPTVAGKVVSNGPYATVADVYNIKGLSEKEKSVLKKYESRFVTLEPQVMYGIDRINNGLYR 155          
BLAST of mRNA_H-paniculata_contig4865.11995.1 vs. uniprot
Match: A0A6U4G1G5_9STRA (PS II complex 12 kDa extrinsic protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U4G1G5_9STRA)

HSP 1 Score: 155 bits (392), Expect = 1.320e-45
Identity = 90/153 (58.82%), Postives = 103/153 (67.32%), Query Frame = 0
Query:   11 ACVGSASAFVPSLAPVRVSSQTTMSAQQNVPQGRGEFLKNAASAAALFGVVAGAAAPVVAEVDNPIVPFLGGGDKIDVNNANVRAYIKLPGMYPNAAGKIVSNGPYSSVSDIYNIKGLTNEEKAAMKKHESRFVTMDPQAMYTIDRINNGLYR 163
            A V +A+AFVP  A      QTT     N   GR EF   AA AAA   V   AAAP  A VD   + +LGG   +D+NNANVR Y+K+PGMYP AAGKIVSNGPY SVSD+YNI GLT+ EK A+KK+ESRFV + P A Y IDRINNGLYR
Sbjct:    8 ATVATAAAFVPQQA----GPQTTA---LNAEAGRREFFGKAAGAAA---VAFAAAAPANAVVDYENIAYLGGSSTVDINNANVRVYLKMPGMYPAAAGKIVSNGPYKSVSDVYNIPGLTSAEKDAIKKYESRFVALKPSADYVIDRINNGLYR 150          
BLAST of mRNA_H-paniculata_contig4865.11995.1 vs. uniprot
Match: F0YKI8_AURAN (PS II complex 12 kDa extrinsic protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YKI8_AURAN)

HSP 1 Score: 152 bits (385), Expect = 1.020e-44
Identity = 72/107 (67.29%), Postives = 86/107 (80.37%), Query Frame = 0
Query:   59 GVVAGA--AAPVVAEVDNPIVPFLGGGDKIDVNNANVRAYIKLPGMYPNAAGKIVSNGPYSSVSDIYNIKGLTNEEKAAMKKHESRFVTMDPQAMYTIDRINNGLYR 163
            G V GA  AAP +A+ D   +P+LGG  KID+NNAN+R Y KLPGMYP AAGKI SNGPY SVSD+YNIKGL + EKAA+KK+ESRF+T++P  MY IDR+NNGLYR
Sbjct:   31 GAVTGASVAAPALADTDYAGLPYLGGSSKIDINNANIRVYAKLPGMYPGAAGKIASNGPYKSVSDVYNIKGLKDAEKAAIKKYESRFITLEPAPMYVIDRMNNGLYR 137          
BLAST of mRNA_H-paniculata_contig4865.11995.1 vs. uniprot
Match: A0A7R9W5B1_9STRA (PS II complex 12 kDa extrinsic protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W5B1_9STRA)

HSP 1 Score: 149 bits (376), Expect = 3.650e-43
Identity = 89/164 (54.27%), Postives = 106/164 (64.63%), Query Frame = 0
Query:    1 MKFSSAVAVVACVGSASAFVPSLAPVRVSSQTTMSAQQNVPQGRGEFLKNAASAAALFGVVAGAA-APVVAEVDNPIVPFLGGGDKIDVNNANVRAYIKLPGMYPNAAGKIVSNGPYSSVSDIYNIKGLTNEEKAAMKKHESRFVTMDPQAMYTIDRINNGLYR 163
            MK +   + VAC   A+AF PS       +    S   N  QGR EFL  A + A  F  VAGAA A  V + DN  V FLGG   +DVNNANVR Y+K+PGMYP AAGK+ +NGPY SV+D+YNI GLT +EK  +KK+ESRFV + P A Y IDRINNGLYR
Sbjct:    1 MKLAVLASAVAC---AAAFAPS------QNGAPASTALNAEQGRKEFLTGALATAGAF--VAGAAPANAVRDYDN--VAFLGGSQTVDVNNANVRVYLKMPGMYPGAAGKLAANGPYKSVADVYNIPGLTAKEKEVIKKYESRFVALPPSADYVIDRINNGLYR 151          
BLAST of mRNA_H-paniculata_contig4865.11995.1 vs. uniprot
Match: A0A7S2GXA3_9STRA (PS II complex 12 kDa extrinsic protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GXA3_9STRA)

HSP 1 Score: 149 bits (375), Expect = 5.020e-43
Identity = 86/154 (55.84%), Postives = 104/154 (67.53%), Query Frame = 0
Query:   11 ACVGSASAFVPSLAPVRVSSQTTMSAQQNVPQGRGEFLKNAASAA-ALFGVVAGAAAPVVAEVDNPIVPFLGGGDKIDVNNANVRAYIKLPGMYPNAAGKIVSNGPYSSVSDIYNIKGLTNEEKAAMKKHESRFVTMDPQAMYTIDRINNGLYR 163
            A V +A+AF    AP  V   T ++A+     GR EF  +AA+AA   FGV    AAP  A VD   + +LGG   +D+NNANVR Y+K+PGMYP  AGKIVSNGPY+SVSD+YNIKGLT+ EK  +KK+ESRF    P A Y IDRINNGLYR
Sbjct:    8 ALVSAAAAFT---APQTVQQSTALNAEA----GRREFFGSAAAAAIGAFGV----AAPASAVVDYENIGYLGGSSIVDLNNANVRVYLKMPGMYPTVAGKIVSNGPYASVSDVYNIKGLTSGEKEILKKYESRFTAKAPSADYVIDRINNGLYR 150          
BLAST of mRNA_H-paniculata_contig4865.11995.1 vs. uniprot
Match: A0A7S2TDD2_PROMC (PS II complex 12 kDa extrinsic protein n=1 Tax=Prorocentrum micans TaxID=2945 RepID=A0A7S2TDD2_PROMC)

HSP 1 Score: 147 bits (372), Expect = 7.980e-43
Identity = 77/132 (58.33%), Postives = 90/132 (68.18%), Query Frame = 0
Query:   32 TTMSAQQNVPQGRGEFLKNAASAAALFGVVAGAAAPVVAEVDNPIVPFLGGGDKIDVNNANVRAYIKLPGMYPNAAGKIVSNGPYSSVSDIYNIKGLTNEEKAAMKKHESRFVTMDPQAMYTIDRINNGLYR 163
            TT S   N   GR EF   AA+A A    V GAAAP  A +D   + +LGG   +D+NNANVRAY+K+PGMYP  AGKIVSNGPY+SV DIY+IKGLT+ E   +KK+E RFV   P   Y IDRINNGLYR
Sbjct:    3 TTTSTALNAEAGRREFFSKAAAATA---AVVGAAAPANAVIDYENIGYLGGSSIVDLNNANVRAYLKMPGMYPTVAGKIVSNGPYASVKDIYSIKGLTSAEADVLKKYEDRFVAKTPSPDYVIDRINNGLYR 131          
BLAST of mRNA_H-paniculata_contig4865.11995.1 vs. uniprot
Match: A0A7S4RBC4_9STRA (PS II complex 12 kDa extrinsic protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RBC4_9STRA)

HSP 1 Score: 147 bits (371), Expect = 3.500e-42
Identity = 79/141 (56.03%), Postives = 95/141 (67.38%), Query Frame = 0
Query:   24 APVRVSSQTTMSAQQNVPQGRGEFLKNAASAA-ALFGVVAGAAAPVVAEVDNPIVPFLGGGDKIDVNNANVRAYIKLPGMYPNAAGKIVSNGPYSSVSDIYNIKGLTNEEKAAMKKHESRFVTMDPQAMYTIDRINNGLYR 163
            AP  V   T ++A+     GR EF   AA+AA   FGV    AAP  A VD   + +LGG + +D+NNANVR Y+K+PGMYP  AGKIVSNGPY+SV+D+Y IKGLT  EK  +KK+ESRF T  P   Y IDRINNGLYR
Sbjct:   36 APQAVKQSTALNAEA----GRREFFGTAAAAAIGAFGV----AAPASAVVDYEALAYLGGSNVVDLNNANVRVYLKMPGMYPTVAGKIVSNGPYASVADVYKIKGLTEAEKGVLKKYESRFTTFSPSPDYVIDRINNGLYR 168          
BLAST of mRNA_H-paniculata_contig4865.11995.1 vs. uniprot
Match: K0TEZ3_THAOC (PS II complex 12 kDa extrinsic protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TEZ3_THAOC)

HSP 1 Score: 146 bits (368), Expect = 5.610e-42
Identity = 82/151 (54.30%), Postives = 105/151 (69.54%), Query Frame = 0
Query:   13 VGSASAFVPSLAPVRVSSQTTMSAQQNVPQGRGEFLKNAASAAALFGVVAGAAAPVVAEVDNPIVPFLGGGDKIDVNNANVRAYIKLPGMYPNAAGKIVSNGPYSSVSDIYNIKGLTNEEKAAMKKHESRFVTMDPQAMYTIDRINNGLYR 163
            + +A+AF P+  P   ++QT ++A+      R  FL     AAA FG  A  AA   A VD   V +LGGG  +DVNNANVRAY++LPGMYP+AAGKIV++GPY SV+D+YNI GLT+ EK  +KK+ES+FV  DP A Y IDR+NNGLYR
Sbjct:   10 ISTAAAFAPNAQP---AAQTALNAEA---ADRRSFL----GAAAAFGAAAIPAA-ASARVDYENVAYLGGGSTVDVNNANVRAYLRLPGMYPSAAGKIVTHGPYKSVADVYNIPGLTSAEKEVIKKYESKFVAKDPAAEYVIDRVNNGLYR 149          
BLAST of mRNA_H-paniculata_contig4865.11995.1 vs. uniprot
Match: A0A7S1XZL8_9STRA (PS II complex 12 kDa extrinsic protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XZL8_9STRA)

HSP 1 Score: 145 bits (365), Expect = 1.800e-41
Identity = 70/118 (59.32%), Postives = 89/118 (75.42%), Query Frame = 0
Query:   46 EFLKNAASAAALFGVVAGAAAPVVAEVDNPIVPFLGGGDKIDVNNANVRAYIKLPGMYPNAAGKIVSNGPYSSVSDIYNIKGLTNEEKAAMKKHESRFVTMDPQAMYTIDRINNGLYR 163
            E L + A+ +AL    A      +A+VD   +P+LGG +KID+NNANVR Y KLPGMYPNAA KI SNGPY SVSD+Y+IKGL+ +EK+ +KK+ESR +T++P AMY IDR NNGLYR
Sbjct:   41 EVLSSIAAGSALAAPFA-----AMADVDYAGLPYLGGSEKIDINNANVRVYAKLPGMYPNAAAKITSNGPYKSVSDVYSIKGLSEKEKSVIKKYESRLITLEPSAMYVIDRTNNGLYR 153          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4865.11995.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G9E0_ECTSI2.680e-7576.97PS II complex 12 kDa extrinsic protein n=2 Tax=Ect... [more]
A0A836CCI8_9STRA2.690e-5861.96PS II complex 12 kDa extrinsic protein n=1 Tax=Tri... [more]
A0A6U4G1G5_9STRA1.320e-4558.82PS II complex 12 kDa extrinsic protein n=1 Tax=Min... [more]
F0YKI8_AURAN1.020e-4467.29PS II complex 12 kDa extrinsic protein n=1 Tax=Aur... [more]
A0A7R9W5B1_9STRA3.650e-4354.27PS II complex 12 kDa extrinsic protein n=1 Tax=Pse... [more]
A0A7S2GXA3_9STRA5.020e-4355.84PS II complex 12 kDa extrinsic protein n=1 Tax=Hel... [more]
A0A7S2TDD2_PROMC7.980e-4358.33PS II complex 12 kDa extrinsic protein n=1 Tax=Pro... [more]
A0A7S4RBC4_9STRA3.500e-4256.03PS II complex 12 kDa extrinsic protein n=3 Tax=Dit... [more]
K0TEZ3_THAOC5.610e-4254.30PS II complex 12 kDa extrinsic protein n=1 Tax=Tha... [more]
A0A7S1XZL8_9STRA1.800e-4159.32PS II complex 12 kDa extrinsic protein n=1 Tax=Pha... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.150.320coord: 65..153
e-value: 4.0E-27
score: 95.6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..13
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..163
NoneNo IPR availableSIGNALP_EUKSignalP-TMSignalP-TMcoord: 1..18
score: 0.544
NoneNo IPR availableSUPERFAMILY81585PsbU/PolX domain-likecoord: 73..163
NoneNo IPR availableTMHMMTMhelixcoord: 4..26
NoneNo IPR availableTMHMMTMhelixcoord: 47..69
IPR010527Photosystem II PsbU, oxygen evolving complexPFAMPF06514PsbUcoord: 83..162
e-value: 6.8E-29
score: 99.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4865contigH-paniculata_contig4865:1990..5314 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4865.11995.1mRNA_H-paniculata_contig4865.11995.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4865 1014..5314 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4865.11995.1 ID=prot_H-paniculata_contig4865.11995.1|Name=mRNA_H-paniculata_contig4865.11995.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=164bp
MKFSSAVAVVACVGSASAFVPSLAPVRVSSQTTMSAQQNVPQGRGEFLKN
AASAAALFGVVAGAAAPVVAEVDNPIVPFLGGGDKIDVNNANVRAYIKLP
GMYPNAAGKIVSNGPYSSVSDIYNIKGLTNEEKAAMKKHESRFVTMDPQA
MYTIDRINNGLYR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010527PSII_PsbU