mRNA_H-paniculata_contig48530.11974.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig48530.11974.1
Unique NamemRNA_H-paniculata_contig48530.11974.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig48530.11974.1 vs. uniprot
Match: D7FUX5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUX5_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 1.320e-12
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:   19 DAATLESTDKITFEDVGNWYNTGGFEVIPWLELLDLRKW 135
            DAAT     +I+FEDVGNWYNTGGFEVIPWLELLDLRKW
Sbjct:  206 DAATEA---EISFEDVGNWYNTGGFEVIPWLELLDLRKW 241
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BLAST of mRNA_H-paniculata_contig48530.11974.1 vs. uniprot
Match: A0A6H5JYX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYX4_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.320e-12
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:   19 DAATLESTDKITFEDVGNWYNTGGFEVIPWLELLDLRKW 135
            DAAT     +I+FEDVGNWYNTGGFEVIPWLELLDLRKW
Sbjct:  195 DAATEA---EISFEDVGNWYNTGGFEVIPWLELLDLRKW 230
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BLAST of mRNA_H-paniculata_contig48530.11974.1 vs. uniprot
Match: A0A7S1G6W4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G6W4_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 7.630e-11
Identity = 25/40 (62.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:   16 WDAATLESTDKITFEDVGNWYNTGGFEVIPWLELLDLRKW 135
            ++ A  +  D+I++E+ G WYN GGFEVIPWLELLDLRKW
Sbjct:  456 FEQADTDEDDRISYEEFGQWYNEGGFEVIPWLELLDLRKW 495
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BLAST of mRNA_H-paniculata_contig48530.11974.1 vs. uniprot
Match: A0A7S3UWA7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWA7_HETAK)

HSP 1 Score: 63.2 bits (152), Expect = 1.460e-10
Identity = 23/30 (76.67%), Postives = 28/30 (93.33%), Query Frame = 1 
Query:   46 KITFEDVGNWYNTGGFEVIPWLELLDLRKW 135
            +++FED G WYN+GGFEV+PWLELLDLRKW
Sbjct:  191 RVSFEDFGGWYNSGGFEVVPWLELLDLRKW 220
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BLAST of mRNA_H-paniculata_contig48530.11974.1 vs. uniprot
Match: A0A7S2K268_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K268_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 3.050e-10
Identity = 24/37 (64.86%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:   43 DKITFEDVGNWYNTGGFEVIPWLELLDLRKWWVYASR 153
            DKI+FE  G+WYN+GG+E++PWLELLDL KW   A R
Sbjct:  116 DKISFEVFGDWYNSGGYELVPWLELLDLAKWDSSAQR 152
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BLAST of mRNA_H-paniculata_contig48530.11974.1 vs. uniprot
Match: A0A8J2WXS2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WXS2_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.270e-9
Identity = 24/37 (64.86%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:   25 ATLESTDKITFEDVGNWYNTGGFEVIPWLELLDLRKW 135
            A  E  ++ITF+D GNWYN+ GFE+ PWLELLDL KW
Sbjct:  159 ANAEDQNEITFDDFGNWYNSRGFELAPWLELLDLTKW 195
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BLAST of mRNA_H-paniculata_contig48530.11974.1 vs. uniprot
Match: A0A7S1VLD0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VLD0_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.660e-9
Identity = 21/36 (58.33%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:   28 TLESTDKITFEDVGNWYNTGGFEVIPWLELLDLRKW 135
            + E +  ITFE  G+WYN+GG++++PWLELLDL KW
Sbjct:   48 STEQSTLITFEAFGDWYNSGGYQIVPWLELLDLAKW 83
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BLAST of mRNA_H-paniculata_contig48530.11974.1 vs. uniprot
Match: A0A7S4DHJ8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DHJ8_HETAK)

HSP 1 Score: 57.8 bits (138), Expect = 8.290e-9
Identity = 22/32 (68.75%), Postives = 26/32 (81.25%), Query Frame = 1 
Query:   40 TDKITFEDVGNWYNTGGFEVIPWLELLDLRKW 135
            + +I FE+ GNWYN GGF+ IPWLELLDL KW
Sbjct:  136 SQRIGFEEFGNWYNNGGFQQIPWLELLDLTKW 167
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BLAST of mRNA_H-paniculata_contig48530.11974.1 vs. uniprot
Match: A0A7S3DV64_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DV64_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 8.320e-9
Identity = 22/35 (62.86%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:   31 LESTDKITFEDVGNWYNTGGFEVIPWLELLDLRKW 135
            L  T+++ F++ G WYN GGFE  PWLELLDLRKW
Sbjct:  287 LRHTERLNFDEFGQWYNEGGFERAPWLELLDLRKW 321
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BLAST of mRNA_H-paniculata_contig48530.11974.1 vs. uniprot
Match: A0A7S3QCH9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QCH9_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 8.350e-9
Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 1 
Query:   43 DKITFEDVGNWYNTGGFEVIPWLELLDLRKW 135
            D+I F++ G+WYN GGFEV PWLELLDL KW
Sbjct: 1074 DRINFDEFGDWYNEGGFEVAPWLELLDLNKW 1104
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig48530.11974.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUX5_ECTSI1.320e-1282.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYX4_9PHAE1.320e-1282.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1G6W4_9STRA7.630e-1162.50Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S3UWA7_HETAK1.460e-1076.67Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2K268_9STRA3.050e-1064.86Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A8J2WXS2_9STRA1.270e-964.86Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1VLD0_9STRA1.660e-958.33Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A7S4DHJ8_HETAK8.290e-968.75Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3DV64_9STRA8.320e-962.86Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S3QCH9_9STRA8.350e-970.97Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig48530contigH-paniculata_contig48530:112..267 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.3
Seed ortholog evalue5.9e-10
Seed eggNOG ortholog2880.D7FUX5
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG OGs2CU92@1,2RK0N@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size156
Cds size156
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930436.5874395-CDS-H-paniculata_contig48530:111..2671622930436.5874395-CDS-H-paniculata_contig48530:111..267Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48530 112..267 -
1691481291.649359-CDS-H-paniculata_contig48530:111..2671691481291.649359-CDS-H-paniculata_contig48530:111..267Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48530 112..267 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig48530.11974.1prot_H-paniculata_contig48530.11974.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig48530 112..267 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig48530.11974.1

>prot_H-paniculata_contig48530.11974.1 ID=prot_H-paniculata_contig48530.11974.1|Name=mRNA_H-paniculata_contig48530.11974.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=52bp
MADGGWDAATLESTDKITFEDVGNWYNTGGFEVIPWLELLDLRKWWVYAS
R*
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mRNA from alignment at H-paniculata_contig48530:112..267-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig48530.11974.1 ID=mRNA_H-paniculata_contig48530.11974.1|Name=mRNA_H-paniculata_contig48530.11974.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=156bp|location=Sequence derived from alignment at H-paniculata_contig48530:112..267- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGGATGGCGGATGGGATGCAGCTACACTCGAGTCTACAGACAAGAT
TACTTTCGAGGACGTCGGAAATTGGTACAATACAGGAGGGTTCGAGGTCA
TTCCTTGGCTGGAGCTCCTCGACCTTCGCAAGTGGTGGGTATATGCGTCA
AGATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig48530:112..267-

>mRNA_H-paniculata_contig48530.11974.1 ID=mRNA_H-paniculata_contig48530.11974.1|Name=mRNA_H-paniculata_contig48530.11974.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=312bp|location=Sequence derived from alignment at H-paniculata_contig48530:112..267- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGGATGGCGGATGGGATGCAGCTACACTCGAGTCTACAGACAAGAT
TACTTTCGAGGACGTCGGAAATTGGTACAATACAGGAGGGTTCGAGGTCA
TTCCTTGGCTGGAGCTCCTCGACCTTCGCAAGTGGTGGGTATATGCGTCA
AGATGAATGGCGGATGGCGGATGGGATGCAGCTACACTCGAGTCTACAGA
CAAGATTACTTTCGAGGACGTCGGAAATTGGTACAATACAGGAGGGTTCG
AGGTCATTCCTTGGCTGGAGCTCCTCGACCTTCGCAAGTGGTGGGTATAT
GCGTCAAGATGA
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