mRNA_H-paniculata_contig4851.11969.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4851.11969.1 vs. uniprot
Match: D8LC61_ECTSI (Putative copper transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC61_ECTSI) HSP 1 Score: 248 bits (633), Expect = 2.020e-67 Identity = 337/821 (41.05%), Postives = 431/821 (52.50%), Query Frame = 1
Query: 1 CDYEGCAKPSMSNGRRFCRRHGEGRRCKTIGCNKVDVGGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQKGAQAXXXXXXXXXXXXXXXXXXXXXXXXSGADVLXXXXXXXXXXXXXXXQKLVRKNNRCTKHAAEASVGSASATR-TSSAXXXXXXXXXXXXLSKQTPQTQLSEPID------AACSNRFAKANSSPSLPVEERHSDRRNSELNCDSLLPSLPVSKPARRQRFNWPPWAPAQATGRISHAVLGIAQRGWLFSCADRERHPASPAAGGDNDVVPDVGVANSDWISPHLWRRLAPPVPNMAAAVEAATGGAPARKLSGAGG---DWLPKSQSTMEPEAS-------------------SLTRSSAPTGTAAAAAATAGV-IPPRAVSPGFSIG--------VPGLRCDGGIDGVPAGSGVRLPQQERARDKAPGAQHTNG-----------RFPANGEDRNPTPSPPLRGISAPSVL------------PSISCGIANVCSAVRETSAERMVEVSDSTTCPILPRL-ANLGGYDTCKSNGVYANVLGPSYVRG-LSPT-----------ANPLGFSSAVSGVTASLGCSMAPSMQTLPMYSGPALAPTAFPSSTFAGAMDKTAAIQDQRRSSPDDDYGAAGRFDACTSYPPGERAAGWRSASPQQPTTKYISLSVVGMMCMTSCGQTVQRALSAVDGVRSVTVHFPTRTASVEVDTNHDLSVNDLIKALGEMGFSSTCVATSTTEEP-LDDGGVNAVWAIASALGLVDHGCAMAWGDPCTCGDDCQCVNCPQHMQKVPFAL 2238
C+Y GC++ + S GRRFCRRHGEGRRCKT GC KVDVGGG+XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KGAQAXXXXXXXXXXXXXXXXXXXXXXXXSGADVLXXXXXXXXXXXXXXX+KLVRKNNRCTKHA++ S G+ + R +SA XXXXX +S T L+E + AA R A +++ P V ++ + + + P P+ R+R PP P + G S G A G L S + SP+ G DV P G++ R VP+ AA A ++L GA G D +P+ + P+ S L R + AA AA+ G +P A + S+G +PG+ G + V +G +P ER AP Q +G F +R+P+ SP PS+L P+ + G C ++VE + R A GG D+ + N P + RG L+PT ++P +S + S+ P+ Q + S P P++ P ER ++ P + T+ +ISLSV GMMCM +CGQTVQ+AL V GV SVT+HFPTRTAS++VD ++++ DL AL +GF S+CVAT+TT+EP L+ GVNAVWAIA+ALGLVD GCAMAWG PC+CGDDC+C+NCPQHM+KV A+
Sbjct: 18 CEYGGCSQ-ATSGGRRFCRRHGEGRRCKTPGCMKVDVGGGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKGAQAXXXXXXXXXXXXXXXXXXXXXXXXSGADVLXXXXXXXXXXXXXXXKKLVRKNNRCTKHASDGSSGARAPPRPAASASLAXXXXXTKAAISATT--AALTEAVGVPQVPPAARHQRAAASSARPKSQVYSSCPTKQRAPPPSQRVAKATPDRPPSPRERHQSPPLRPHRRAGAESGG--GFAAGGPLPSMSLMAAREPSPSFGLGGDVPPPGGLSAL---------REPGAVPSAVAAAAAGPLLQGQQQLRGAVGRFQDGIPRGREVFSPDGSHPHHPRGMPQLAGMGSIGPGLPRFDGRDDSRAAQAASMGPELPHHAYA---SVGGQGLVRDLLPGVTVANGSERVDMVNGSWMPS-ERMVGPAPAPQGLDGVDNRAPPFRGGHFSKGAIERSPSVSP-----LPPSLLLQPXXXXFSMPFPASATGSREACG---XXXXXKVVEGGSRDAAGMNGRQSATYGGGDSDRVPLNAPNA--PVWERGGLAPTTTLAHPSAARTSDPQAAASTSAATAFSMSNGGLPTSQDAALSSRPVEPIRPLPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGHKAP-ERTRACSTSPPAEQTSSFISLSVSGMMCMENCGQTVQQALKKVPGVLSVTIHFPTRTASIKVDAKANVTLGDLTSALDAIGFGSSCVATTTTQEPTLEQDGVNAVWAIANALGLVDPGCAMAWGRPCSCGDDCRCINCPQHMKKVSHAV 809
BLAST of mRNA_H-paniculata_contig4851.11969.1 vs. uniprot
Match: A0A6H5KKC5_9PHAE (HMA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKC5_9PHAE) HSP 1 Score: 182 bits (462), Expect = 2.880e-44 Identity = 310/780 (39.74%), Postives = 395/780 (50.64%), Query Frame = 1
Query: 1 CDYEGCAKPSMSNGRRFCRRHGEGRRCKTIGCNKVDVGGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQKGAQAXXXXXXXXXXXXXXXXXXXXXXXXSGADVLXXXXXXXXXXXXXXXQKLVRKNNRCTKHAAEASVGSASATR-TSSAXXXXXXXXXXXXLSKQTPQTQLSEPID------AACSNRFAKANSSPSLPVEERHSDRRNSELNCDSLLPSLPVSKPARRQRFNWPPWAPAQATGRISHAVLGIAQRGWLFSCADRERHPASPAAGGDNDVVPDVGVANSDWISPHLWRRLAPPVPNMAAAVEAATGGAPARKLSGAGGDWLPKSQSTMEPEAS-------------------SLTRSSAPTGTAAAAAATAGVIPPRAVSPGFSIG------VPGLRCDGGIDGVPAGSGVRLPQQERARDKAPGAQHTNGRFPANGEDRNPT--PSPPLRGISAPSVLPSISCGIANVCSAVRETSAE------RMVEVSDSTTCPILPRLANLGGYDTCKSNGVYANVL------GPSYVRG-LSPT---ANPLG-----------------FSSAVSGVTASLGCSMAPSMQTLPMYSGPALAPTAFPSSTFAGAMDKTAAIQDQRRSSPDDDYG--AAGRFDACTSYPPGERAAGWRSASPQQPTTKYISLSVVGMMCMTSCGQTVQRALSAVDGVRSVTVHFPTRTASVEVDTNHDLSVNDLIKALGEMGFSSTCVATSTTEEP-LDDGGVNAVWAIASALG 2130
C+Y GC++ + S GRRFCRRHGEGRRCKT GC KVDVGGG+XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KGAQAXXXXXXXXXXXXXXXXXXXXXXXXSGADVLXXXXXXXXXXXXXXX+KLVRKNNRCTKHA++ S G+ + R +SA XXXXXX +S T L+E + AA R A + + P V + + + + P P+ R+R PP P + G S G A G L S + SP+ G DV P G+ S P R P AAA G G D +P+ + + L R G+ AA AA+ G P G +PG+ G + V +G +P ER +AP + +R+P+ P PP + P P S + + RE ++VE A + G ++ G ++ + P++ RG L+PT A+P FSS G++ S +++ + P+ PA A +A P G A R AC++ PP E+ T+ +ISLSV GMMCM +CGQTVQ+AL V GV SVT+HFPTRTAS++VDT ++++ DL AL +GF S+CVAT+T +EP L+ GVNAVWAIA+ALG
Sbjct: 163 CEYGGCSQ-ATSGGRRFCRRHGEGRRCKTPGCMKVDVGGGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKGAQAXXXXXXXXXXXXXXXXXXXXXXXXSGADVLXXXXXXXXXXXXXXXKKLVRKNNRCTKHASDGSSGARAPPRPAASASLXXXXXXTKAAISATT--AALTEAVGVPQVPPAARHQRAAASLAGPKNQVYSPSPTKHTAPPSSQRGARATPDRPPSPRERHQSPPLRPHRRVGAESGG--GFAAGGPLPSMSLMAAREPSPSFGLGGDVPPPGGL--SALREPACGERAVPSAVAAAAAGPLLQGQQQLHGAVGRAEDGIPRGPEVFSADGNHPQHPRGMPQLAGMGAIGPGLRRFDGRDGSRAAQAASMGTEPSHHAYAAVDGGGLDRDLLPGVMVANGSERVGMANGSWMPS-ERMVGQAPAPPCRGSQLSKGAIERSPSVSPLPPSLLLQLP---PLFSMPFSASATGSREACGGGGRCGGKVVEGXXXXXXXXSRDAAGINGRESATYGGGDSDQVPLNAPNAPAWERGGLAPTMTLAHPSAARASDLQAAASTSAATVFSSKNGGLSTSQDAALSARLVE-PIRPLPAAA-SAAPRXXXXXXXXXXXXXXXXXXXXXXXXXGDKAPERTRACSTSPPAEQ------------TSSFISLSVSGMMCMENCGQTVQQALKKVPGVLSVTIHFPTRTASIKVDTEANVTLGDLTSALDAIGFDSSCVATTTAQEPTLEQDGVNAVWAIANALG 917
BLAST of mRNA_H-paniculata_contig4851.11969.1 vs. uniprot
Match: A0A836CMV3_9STRA (HMA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMV3_9STRA) HSP 1 Score: 119 bits (299), Expect = 5.860e-24 Identity = 66/171 (38.60%), Postives = 85/171 (49.71%), Query Frame = 1
Query: 1846 YISLSVVGMMCMTSCGQTVQRALSAVDGVRSVTVHFPTRTASVEVDTNHDLSVNDLIKALGEMGFSSTCVATS-----------------------------------------------TTEEPLDDGGVNAVWAIASALGLVDHGCAMAWGDPCTCGDD-CQCVNCPQH 2214
Y+SL+V GMMCM CG+TV+R L+ V GV +V+VHFPTRTASV+VD + L++ L +GF +TC++ T+EEP+ NAVWAIA LGLVD GC M+WG C C D C+C NC H
Sbjct: 1063 YVSLAVEGMMCMRDCGETVRRCLAGVPGVVTVSVHFPTRTASVQVDPASGAGIETLVERLEAVGFQATCISRCAVDMQSMCRVMRNVRSSQGTLRVLQSIXXXXXXXXXXXXXXXXXXXXTSEEPMVAQSENAVWAIAEVLGLVDRGCPMSWGGACACDPDKCRCTNCDVH 1233
BLAST of mRNA_H-paniculata_contig4851.11969.1 vs. uniprot
Match: A0A7S3NK13_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NK13_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 1.070e-10 Identity = 44/134 (32.84%), Postives = 57/134 (42.54%), Query Frame = 1
Query: 1840 TKYISLSVVGMMCMTSCGQTVQRALSAVDGVRSVTVHFPTRTASVEVDTNHDLSVNDLIKALGEMGFSSTCVATSTTEEPLDDGGVNAV---------WAIASALGLVDHGCAMAWGDPCTCGDDCQCVNCPQH 2214
TK + L V GMMC+ SCG T+ RAL + R V + P R N +++K L +GF S V+ + L G W IA LGL+ C G C+CG C C CP H
Sbjct: 219 TKSVVLRVPGMMCLGSCGATIDRALCVLPETRVVGIDVPRRLVHCHTPVNP----YEIVKTLNHVGFDSAIVSIAAKSANLSSGSFTEFCDPPENSFEWDIADTLGLISASCDRRCGGNCSCGPSCMCHWCPVH 348
BLAST of mRNA_H-paniculata_contig4851.11969.1 vs. uniprot
Match: A0A2D4BPL9_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BPL9_PYTIN) HSP 1 Score: 57.8 bits (138), Expect = 8.990e-5 Identity = 30/81 (37.04%), Postives = 47/81 (58.02%), Query Frame = 1
Query: 1843 KYISLSVVGMMCMTSCGQTVQRALSAVDGVRSVTVHFPTRTASVEVDTNHDLSVNDLIKALGEMG--FSSTCVATSTTEEP 2079
+ + L V GM C +C VQ+AL+ VDGV+S V FP++ A+VEV++ L+ DLI + G F ++ + +EP
Sbjct: 470 RVVKLDVTGMSCAKNCASKVQKALAEVDGVQSAVVDFPSKVATVEVNSRSKLTAADLIATVRAAGAKFDASVHNAAREKEP 550 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4851.11969.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4851.11969.1 >prot_H-paniculata_contig4851.11969.1 ID=prot_H-paniculata_contig4851.11969.1|Name=mRNA_H-paniculata_contig4851.11969.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=737bp MSNGRRFCRRHGEGRRCKTIGCNKVDVGGGSCRRHGGGRRCGADGCLKTDback to top mRNA from alignment at H-paniculata_contig4851:1244..8659- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4851.11969.1 ID=mRNA_H-paniculata_contig4851.11969.1|Name=mRNA_H-paniculata_contig4851.11969.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7416bp|location=Sequence derived from alignment at H-paniculata_contig4851:1244..8659- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4851:1244..8659- >mRNA_H-paniculata_contig4851.11969.1 ID=mRNA_H-paniculata_contig4851.11969.1|Name=mRNA_H-paniculata_contig4851.11969.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4422bp|location=Sequence derived from alignment at H-paniculata_contig4851:1244..8659- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |