mRNA_H-paniculata_contig48430.11960.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig48430.11960.1
Unique NamemRNA_H-paniculata_contig48430.11960.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig48430.11960.1 vs. uniprot
Match: A0A6H5JV12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV12_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 5.690e-18
Identity = 33/60 (55.00%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:    1 AFRYATDPADGKIKMQVQHRSYEDQWGRIDVRGKYSPGHMQVMKSWPKLMDTPDHPRKAI 180
            AF+ + DP+DG   MQVQ RSY+++WG I+ +G+Y PG++ VMKSWP + DTP HPRK++
Sbjct:   47 AFKVSKDPSDGVATMQVQQRSYKEEWGVINRQGEYGPGYITVMKSWPDVRDTPSHPRKSL 106
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig48430.11960.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JV12_9PHAE5.690e-1855.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig48430contigH-paniculata_contig48430:25..735 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size238
Cds size174
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig48430.11960.1prot_H-paniculata_contig48430.11960.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig48430 47..693 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930434.3585472-UTR-H-paniculata_contig48430:24..461622930434.3585472-UTR-H-paniculata_contig48430:24..46Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig48430 25..46 -
1691481290.5619495-UTR-H-paniculata_contig48430:24..461691481290.5619495-UTR-H-paniculata_contig48430:24..46Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig48430 25..46 -
1622930434.4151807-UTR-H-paniculata_contig48430:693..7351622930434.4151807-UTR-H-paniculata_contig48430:693..735Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig48430 694..735 -
1691481290.589146-UTR-H-paniculata_contig48430:693..7351691481290.589146-UTR-H-paniculata_contig48430:693..735Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig48430 694..735 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930434.3753712-CDS-H-paniculata_contig48430:46..1701622930434.3753712-CDS-H-paniculata_contig48430:46..170Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48430 47..170 -
1691481290.5709612-CDS-H-paniculata_contig48430:46..1701691481290.5709612-CDS-H-paniculata_contig48430:46..170Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48430 47..170 -
1622930434.3911183-CDS-H-paniculata_contig48430:643..6931622930434.3911183-CDS-H-paniculata_contig48430:643..693Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48430 644..693 -
1691481290.5810766-CDS-H-paniculata_contig48430:643..6931691481290.5810766-CDS-H-paniculata_contig48430:643..693Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48430 644..693 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig48430.11960.1

>prot_H-paniculata_contig48430.11960.1 ID=prot_H-paniculata_contig48430.11960.1|Name=mRNA_H-paniculata_contig48430.11960.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=58bp
MQVQHRSYEDQWGRIDVRGKYSPGHMQVMKSWPKLMDTPDHPRKAIDSNN
RKALVVP*
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mRNA from alignment at H-paniculata_contig48430:25..735-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig48430.11960.1 ID=mRNA_H-paniculata_contig48430.11960.1|Name=mRNA_H-paniculata_contig48430.11960.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=711bp|location=Sequence derived from alignment at H-paniculata_contig48430:25..735- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGTTCCGGTATGCCACCGATCCGGCTGACGGGAAGATCAAGATGCAGGT
GCAACACCGCAGCTACGAGGACCAGTGGGGTCGCATCGACGTGTGAGAAA
AATAATCAGTACATGATGATTTCCTGTTTGCATGATTGAGCTGCACAATT
CCGTACAAATAAATGTGATCGTTCACCGTTCGCACTCGTCTTGCCGATAT
GTACCAGAAGAGAAGTTGCCTAGATGAAGAGCTGTGTGTGCTTGGTTGGG
CTAGCTTTCTGCGCCGCTAATGTAGGAAATTTGTAGCAGAGGGCGCCGAC
TGCTTGTGCTGCAACTGCGTCGGAAAAACAAGCCCCCCTATGACGGGAGT
ATGGAAATTTGGTTTGCGCGTACGATCCCACCCAATGCATAACCTCGGCA
TGAATTCAGTCGTAGACGACGGGATACGACAAATTCGCGTTTGGGTCCCT
AAAAATAATGTTTACCCGCCCTTTTACCCCTCTTTGCGTCATCCTCATCA
CGTATTTTGTATTTCCCTATTTTGCCGTCACTTGGCTCCATATAATACTT
CATTGCGTACAATAGGCGCGGCAAGTACTCGCCAGGTCACATGCAGGTTA
TGAAGTCGTGGCCGAAGCTGATGGACACGCCTGATCACCCCCGCAAGGCC
ATCGACAGCAATAATCGCAAAGCACTTGTTGTGCCTTAAGGCTTCCGACG
CGCGCATCAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig48430:25..735-

>mRNA_H-paniculata_contig48430.11960.1 ID=mRNA_H-paniculata_contig48430.11960.1|Name=mRNA_H-paniculata_contig48430.11960.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at H-paniculata_contig48430:25..735- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGGTGCAACACCGCAGCTACGAGGACCAGTGGGGTCGCATCGACGT
ATGCAGGTGCAACACCGCAGCTACGAGGACCAGTGGGGTCGCATCGACGT
GCGCGGCAAGTACTCGCCAGGTCACATGCAGGTTATGAAGTCGTGGCCGA
AGCTGATGGACACGCCTGATCACCCCCGCAAGGCCATCGACAGCAATAAT
CGCAAAGCACTTGTTGTGCCTTAAGCGCGGCAAGTACTCGCCAGGTCACA
TGCAGGTTATGAAGTCGTGGCCGAAGCTGATGGACACGCCTGATCACCCC
CGCAAGGCCATCGACAGCAATAATCGCAAAGCACTTGTTGTGCCTTAA
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