mRNA_H-paniculata_contig48381.11950.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig48381.11950.1
Unique NamemRNA_H-paniculata_contig48381.11950.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig48381.11950.1 vs. uniprot
Match: A0A6H5JV54_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV54_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 5.910e-6
Identity = 30/77 (38.96%), Postives = 45/77 (58.44%), Query Frame = 1 
Query:    1 ALTLPRNNQGTEKTAHNKHRSRRTHHTDVKLHNVRDEVEAGKVDVVYVGTGEEHADVLTKALERSSFEEHVNASMNV 231
            ++ +  +NQG      N H S RT H DV++H +R    +G   V +V T E+HAD+LTKAL R+S + H    M++
Sbjct:  760 SIQVLEDNQGAIALVQNPHSSGRTKHIDVRVHFIRGLFRSGDTSVKFVPTTEQHADLLTKALSRTSLQYHRRKLMSL 836
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BLAST of mRNA_H-paniculata_contig48381.11950.1 vs. uniprot
Match: A0A0A9YPH4_LYGHE (Copia protein n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9YPH4_LYGHE)

HSP 1 Score: 52.8 bits (125), Expect = 7.330e-6
Identity = 27/67 (40.30%), Postives = 43/67 (64.18%), Query Frame = 1 
Query:    4 LTLPRNNQGTEKTAHNKHRSRRTHHTDVKLHNVRDEVEAGKVDVVYVGTGEEHADVLTKALERSSFE 204
            + L  +NQ     A N+  S+R  H D+K H +R++V+ G + + YV T E++AD+LTK L++ SFE
Sbjct:  268 VMLFEDNQSCIHLARNRENSKRIKHIDIKHHFIREKVDEGVIKLNYVSTSEQNADILTKGLDKQSFE 334
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BLAST of mRNA_H-paniculata_contig48381.11950.1 vs. uniprot
Match: A0A0J7KA47_LASNI (Retroelement pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KA47_LASNI)

HSP 1 Score: 52.4 bits (124), Expect = 1.120e-5
Identity = 28/61 (45.90%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:   22 NQGTEKTAHNKHRSRRTHHTDVKLHNVRDEVEAGKVDVVYVGTGEEHADVLTKALERSSFE 204
            NQG+ K   N    +RT H DV+ H +R+  E G+VD+ YV + ++ AD+LTKAL ++SFE
Sbjct: 1158 NQGSIKLVKNLEFHKRTKHIDVRFHFIREVYENGQVDIKYVPSSKQLADILTKALPKNSFE 1218
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BLAST of mRNA_H-paniculata_contig48381.11950.1 vs. uniprot
Match: A0A6H5JDY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDY5_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 1.600e-5
Identity = 28/77 (36.36%), Postives = 44/77 (57.14%), Query Frame = 1 
Query:    1 ALTLPRNNQGTEKTAHNKHRSRRTHHTDVKLHNVRDEVEAGKVDVVYVGTGEEHADVLTKALERSSFEEHVNASMNV 231
            ++ +  +NQG      N   S R+ H DV+ H +R    +G + + +V T E+HAD+LTKAL +SS + H    MN+
Sbjct:  184 SIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMNL 260
[Close]
BLAST of mRNA_H-paniculata_contig48381.11950.1 vs. uniprot
Match: A0A6H5KGX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGX6_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 2.010e-5
Identity = 28/77 (36.36%), Postives = 44/77 (57.14%), Query Frame = 1 
Query:    1 ALTLPRNNQGTEKTAHNKHRSRRTHHTDVKLHNVRDEVEAGKVDVVYVGTGEEHADVLTKALERSSFEEHVNASMNV 231
            ++ +  +NQG      N   S R+ H DV+ H +R    +G + + +V T E+HAD+LTKAL +SS + H    MN+
Sbjct:  518 SIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMNL 594
[Close]
BLAST of mRNA_H-paniculata_contig48381.11950.1 vs. uniprot
Match: A0A6H5K4H5_9PHAE (CCHC-type domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4H5_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 2.090e-5
Identity = 28/77 (36.36%), Postives = 44/77 (57.14%), Query Frame = 1 
Query:    1 ALTLPRNNQGTEKTAHNKHRSRRTHHTDVKLHNVRDEVEAGKVDVVYVGTGEEHADVLTKALERSSFEEHVNASMNV 231
            ++ +  +NQG      N   S R+ H DV+ H +R    +G + + +V T E+HAD+LTKAL +SS + H    MN+
Sbjct: 1117 SIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMNL 1193
[Close]
BLAST of mRNA_H-paniculata_contig48381.11950.1 vs. uniprot
Match: A0A6H5L715_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L715_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 2.110e-5
Identity = 28/77 (36.36%), Postives = 44/77 (57.14%), Query Frame = 1 
Query:    1 ALTLPRNNQGTEKTAHNKHRSRRTHHTDVKLHNVRDEVEAGKVDVVYVGTGEEHADVLTKALERSSFEEHVNASMNV 231
            ++ +  +NQG      N   S R+ H DV+ H +R    +G + + +V T E+HAD+LTKAL +SS + H    MN+
Sbjct: 1497 SIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMNL 1573
[Close]
BLAST of mRNA_H-paniculata_contig48381.11950.1 vs. uniprot
Match: A0A6H5LGF7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGF7_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 2.120e-5
Identity = 28/77 (36.36%), Postives = 44/77 (57.14%), Query Frame = 1 
Query:    1 ALTLPRNNQGTEKTAHNKHRSRRTHHTDVKLHNVRDEVEAGKVDVVYVGTGEEHADVLTKALERSSFEEHVNASMNV 231
            ++ +  +NQG      N   S R+ H DV+ H +R    +G + + +V T E+HAD+LTKAL +SS + H    MN+
Sbjct: 1820 SIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMNL 1896
[Close]
BLAST of mRNA_H-paniculata_contig48381.11950.1 vs. uniprot
Match: A0A4Y2UQR9_ARAVE (Uncharacterized protein n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2UQR9_ARAVE)

HSP 1 Score: 48.5 bits (114), Expect = 2.400e-5
Identity = 26/66 (39.39%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:    4 LTLPRNNQGTEKTAHNKHRSRRTHHTDVKLHNVRDEVEAGKVDVVYVGTGEEHADVLTKALERSSF 201
            + L  +NQ   + A N    RR+ HTDV+ H++R++VE G + + YV + E+ AD+LTK L  + F
Sbjct:    2 MALNVDNQSAIRLAPNPQHHRRSKHTDVRFHSIREKVEQGVLKLEYVPSSEQTADILTKPLTNTLF 67
[Close]
BLAST of mRNA_H-paniculata_contig48381.11950.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 2.730e-5
Identity = 28/76 (36.84%), Postives = 43/76 (56.58%), Query Frame = 1 
Query:    1 ALTLPRNNQGTEKTAHNKHRSRRTHHTDVKLHNVRDEVEAGKVDVVYVGTGEEHADVLTKALERSSFEEHVNASMN 228
            ++ +  +NQG      N   S R+ H DV+ H +R    +G + + +V T E+HAD+LTKAL +SS + H    MN
Sbjct:  431 SIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMN 506
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig48381.11950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5JV54_9PHAE5.910e-638.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0A9YPH4_LYGHE7.330e-640.30Copia protein n=1 Tax=Lygus hesperus TaxID=30085 R... [more]
A0A0J7KA47_LASNI1.120e-545.90Retroelement pol polyprotein n=1 Tax=Lasius niger ... [more]
A0A6H5JDY5_9PHAE1.600e-536.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGX6_9PHAE2.010e-536.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4H5_9PHAE2.090e-536.36CCHC-type domain-containing protein n=11 Tax=Ectoc... [more]
A0A6H5L715_9PHAE2.110e-536.36CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5LGF7_9PHAE2.120e-536.36Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A4Y2UQR9_ARAVE2.400e-539.39Uncharacterized protein n=1 Tax=Araneus ventricosu... [more]
A0A6H5JCG0_9PHAE2.730e-536.84Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig48381contigH-paniculata_contig48381:157..454 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size299
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930433.2448335-CDS-H-paniculata_contig48381:156..4531622930433.2448335-CDS-H-paniculata_contig48381:156..453Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48381 157..453 +
1691481290.190355-CDS-H-paniculata_contig48381:156..4531691481290.190355-CDS-H-paniculata_contig48381:156..453Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48381 157..453 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig48381.11950.1prot_H-paniculata_contig48381.11950.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig48381 157..453 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig48381.11950.1

>prot_H-paniculata_contig48381.11950.1 ID=prot_H-paniculata_contig48381.11950.1|Name=mRNA_H-paniculata_contig48381.11950.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=99bp
ALTLPRNNQGTEKTAHNKHRSRRTHHTDVKLHNVRDEVEAGKVDVVYVGT
GEEHADVLTKALERSSFEEHVNASMNVVKLGEYREKEREHMFLMLQVGG
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mRNA from alignment at H-paniculata_contig48381:157..454+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig48381.11950.1 ID=mRNA_H-paniculata_contig48381.11950.1|Name=mRNA_H-paniculata_contig48381.11950.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=298bp|location=Sequence derived from alignment at H-paniculata_contig48381:157..454+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCCTGACATTACCGCGTAACAATCAAGGGACCGAAAAGACGGCCCACAA
TAAGCACCGCAGTCGGCGGACGCATCACACCGACGTGAAGCTTCACAATG
TTCGCGATGAGGTTGAGGCTGGAAAGGTTGACGTAGTCTATGTGGGGACT
GGAGAGGAGCACGCGGACGTTCTCACGAAGGCGCTGGAGAGGAGTTCTTT
TGAGGAGCACGTAAACGCATCGATGAATGTTGTGAAATTGGGTGAATATC
GCGAAAAAGAGAGGGAACATATGTTTTTAATGTTGCAGGTAGGTGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig48381:157..454+

>mRNA_H-paniculata_contig48381.11950.1 ID=mRNA_H-paniculata_contig48381.11950.1|Name=mRNA_H-paniculata_contig48381.11950.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at H-paniculata_contig48381:157..454+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCCTGACATTACCGCGTAACAATCAAGGGACCGAAAAGACGGCCCACAA
TAAGCACCGCAGTCGGCGGACGCATCACACCGACGTGAAGCTTCACAATG
TTCGCGATGAGGTTGAGGCTGGAAAGGTTGACGTAGTCTATGTGGGGACT
GGAGAGGAGCACGCGGACGTTCTCACGAAGGCGCTGGAGAGGAGTTCTTT
TGAGGAGCACGTAAACGCATCGATGAATGTTGTGAAATTGGGTGAATATC
GCGAAAAAGAGAGGGAACATATGTTTTTAATGTTGCAGGTAGGTGGAGCC
CTGACATTACCGCGTAACAATCAAGGGACCGAAAAGACGGCCCACAATAA
GCACCGCAGTCGGCGGACGCATCACACCGACGTGAAGCTTCACAATGTTC
GCGATGAGGTTGAGGCTGGAAAGGTTGACGTAGTCTATGTGGGGACTGGA
GAGGAGCACGCGGACGTTCTCACGAAGGCGCTGGAGAGGAGTTCTTTTGA
GGAGCACGTAAACGCATCGATGAATGTTGTGAAATTGGGTGAATATCGCG
AAAAAGAGAGGGAACATATGTTTTTAATGTTGCAGGTAGGTGGA
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