mRNA_H-paniculata_contig4831.11940.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4831.11940.1 vs. uniprot
Match: D7FZZ9_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZZ9_ECTSI) HSP 1 Score: 380 bits (975), Expect = 1.480e-113 Identity = 240/498 (48.19%), Postives = 306/498 (61.45%), Query Frame = 1
Query: 13 IDYWEEISAEDGSIWFYNHTTQEYSEALPT--ALTTIEPGDENARTT---ENNTGLTMEPIS-EIWEDEAEGEVFVPWAVDDPGDMKATLPTATVVAELPGLPESAVADELACKPDDPAAIREQNMRALLVLLPARVVDIVVKEAMKLALLHIKRQATAQAERRRRSLLATRAEYRHIRTSVAKVSVAGQIGYKGNSGACSDDESGD--EGTGIDERE-----RNTITQERDFIAGEKLAETLKVLLSGSKEEARLTMRRVCLSSQGIGPTGARELVPALKKCIIVALFLGNNAIGDKGAEALADGLRYARGLQELHLNDNEASCGDEGITDAGCDRLVVSLEPLPVLTSLNLSHNPFGEDGCRSLATLISQPGCPLKSLAIAGCLDVDPGAWKTIAPPPCKGKKNIGQTRWVPPRPGDDGAVFLSAALMSPHGCPLRSFRFVNAGIRALGAKAIAAALCANKILEVIDLSGNDLAHKNDDEPGESAGESLKFGLQVN 1467
+DYWEE++ EDG++ FYNHT QEY LP A + A+ T E + ++EP+ ++W D +GEVFVPW ++ M+A+ P A VVA L + DE PDDPA +REQN+RALLVLLPA++++ V+K AM+ A+LH +R ATA AE+RRR LL++RA++RH AK + G + +K G + E G EG +D E RNT TQERD I G KL E L+VL S S EEAR+TMR + LSSQGIG GA++L PALK C+IVAL LGNNA+GDKG +LADGLR+ARGLQ+L SLA +SQ GCPL+SL++AGCLDVDP AWKTI +GK+ + RW PPRPGDDGAV L+AAL+SPHGCPLR R NAG++ +GAKAIA ALCAN+ LE +D+SGND D ESA + L FGLQ +
Sbjct: 27 VDYWEEVALEDGTVCFYNHTRQEYFSLLPANDATNGCPASVDEAQPTAVGEFSHDNSLEPLEGQVW-DGVDGEVFVPWPDEE---MRAS-PDA-VVAHNKALETTEGDDEEPFTPDDPAVVREQNLRALLVLLPAKLMNGVIKAAMEGAMLHTRRTATADAEKRRRLLLSSRAQFRHT----AKKNCQGDMKHKDGDGFDDETEEGPTAEGETVDSAETPDSRRNTTTQERDTIVGHKLQEVLRVLYSTSTEEARVTMRAIYLSSQGIGAAGAQQLAPALKDCVIVALHLGNNALGDKGLCSLADGLRHARGLQKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------XXXXXXXXXLSLAIYLSQQGCPLRSLSLAGCLDVDPAAWKTIN---VRGKEGM---RWDPPRPGDDGAVSLAAALISPHGCPLRRLRMANAGMKTIGAKAIATALCANRTLETVDVSGNDFGSTTDASAWESAADLLSFGLQAS 501
BLAST of mRNA_H-paniculata_contig4831.11940.1 vs. uniprot
Match: A0A6H5KJE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJE5_9PHAE) HSP 1 Score: 107 bits (268), Expect = 5.920e-23 Identity = 65/123 (52.85%), Postives = 89/123 (72.36%), Query Frame = 1
Query: 4219 GVGEEEEEG-AFLPELDERGLTASQRVKQLQDARGAAEKEKKRAYTEYSRRVKRNLRAQRRFNKAGKRADILAHSMDAAELADCLRGRGWDKEVDKTPIDDLRRTAVEVIRPEIRIRLHATSR 4584
G GEE+EEG LPE+D+R LT QR+++L+DAR E+EK+RA+ EYSR+VK NLR ++RF A KRA +A SMD +L + L+ RG+ + + +D LRR +E I+PEIR+RLHATSR
Sbjct: 4 GSGEEDEEGNPILPEIDDRFLTVGQRLRRLRDARDNLEREKQRAHLEYSRQVKSNLRERKRFVLAEKRAGRIAKSMDTKQLVEALKERGYATKGSEQ-LDQLRRVFIEGIQPEIRVRLHATSR 125
BLAST of mRNA_H-paniculata_contig4831.11940.1 vs. uniprot
Match: A0A836CKC6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKC6_9STRA) HSP 1 Score: 107 bits (266), Expect = 2.170e-19 Identity = 92/308 (29.87%), Postives = 125/308 (40.58%), Query Frame = 1
Query: 868 GAEALADGLRYARGLQELHLNDNEASCGDEGITDAGCDRLVVSLE-PLPVLTSLNLSHNPFGEDGCRSLATLISQPGCPLKSLAIAGCLDVDPGAWKTIAPPPCKGKKNIGQTRWVPPRPGDDGAVFLSAALMSPHGCPLRSFRFVNAGIRALGAKAIAAALCANKILEVIDLSGNDLAHKNDDEPGESAGESLKFGLQVNTT-----------------------VRTITLRACGLAHSEVVGIQRYASRTSGKQNRPRSAIESRNGPDSDSGQLSWAQEKSLGYKAHLLRNWLLDAACVKGMEYPR 1719
GA ALA LR+AR L+ LHL N + DAG L + P P L + +L++ G + G ++ PGD+GAV L+AAL+SPHGC L+ R VNA + A G +AIAAAL LE +DLSGNDL+ D + +++ +R++ LRACGL+ +++ R P L+WA+EK LG + LR WLLDAA KG EYPR
Sbjct: 266 GAAALAAALRHARALRALHLASNS-------VGDAGARALAAAAAAPHPTLAVVXXXXXXXXXXXXXXXXXXXXXXXXXXXALSLGGAVTSLVGVYQAGGSTAAXXXXXXXXXXXXX-XPGDEGAVCLAAALLSPHGCALQRLRLVNARLGAAGVRAIAAALHCRSALEELDLSGNDLS---DVDTAALLLRAIRVAAXXXXXXXXXXXXXXXXXXXXXXXXXEGRLRSVALRACGLSGAQLAEAARLTGAAXXXXXXP----------------LTWAEEKRLGAEGAALRAWLLDAAAGKGFEYPR 546
BLAST of mRNA_H-paniculata_contig4831.11940.1 vs. uniprot
Match: A0A4X2K3W7_VOMUR (NLR family pyrin domain containing 12 n=3 Tax=Diprotodontia TaxID=38609 RepID=A0A4X2K3W7_VOMUR) HSP 1 Score: 61.2 bits (147), Expect = 1.860e-5 Identity = 63/229 (27.51%), Postives = 100/229 (43.67%), Query Frame = 1
Query: 826 IVALFLGNNAIGDKGAEALADGLRYAR-GLQELHLNDNEASCGDEGITDAGCDRLVVSLEPLPVLTSLNLSHNPFGEDGCRSLATLISQPGCPLKSLAIAGCLDVDPGAWKTIAPPPCKGKKNIGQTRWVPPRPGDDGAVFLSAALMSPHGCPLRSFRFVNAGIRALGAKAIAAALCANKILEVIDLSGNDLAHKNDDEPGESAGESLKFGL-QVNTTVRTITLRACGL 1506
+V L L NA+G++GA+ L GLR+ LQ L L I+ A C + ++L LT L+LS N G G L + QP C L+ L + C +D A + ++ +++ + GD G L L P C L++ + + +++ L N+ L +DLS NDL G+ +SL GL + ++T+ L C L
Sbjct: 725 LVELVLYRNALGNRGAKLLCQGLRHPNCHLQNLRLKQCR-------ISSAACQDIALALRTNRNLTRLDLSRNTLGATGVMLLCEALQQPTCHLQMLQLRRC-QLDGAACQELSKV-LSTSQHLTELDLTGNALGDLGLQHLCPGLSHP-ACKLQTLWLKICHLTPSACQNLSSVLSTNQNLTELDLSLNDL--------GDLGVKSLCEGLCHSKSQLQTLRLGICRL 935 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4831.11940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4831.11940.1 >prot_H-paniculata_contig4831.11940.1 ID=prot_H-paniculata_contig4831.11940.1|Name=mRNA_H-paniculata_contig4831.11940.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1528bp AESAIDYWEEISAEDGSIWFYNHTTQEYSEALPTALTTIEPGDENARTTEback to top mRNA from alignment at H-paniculata_contig4831:2269..12376- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4831.11940.1 ID=mRNA_H-paniculata_contig4831.11940.1|Name=mRNA_H-paniculata_contig4831.11940.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=10108bp|location=Sequence derived from alignment at H-paniculata_contig4831:2269..12376- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4831:2269..12376- >mRNA_H-paniculata_contig4831.11940.1 ID=mRNA_H-paniculata_contig4831.11940.1|Name=mRNA_H-paniculata_contig4831.11940.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=9168bp|location=Sequence derived from alignment at H-paniculata_contig4831:2269..12376- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |