mRNA_H-paniculata_contig4821.11918.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4821.11918.1
Unique NamemRNA_H-paniculata_contig4821.11918.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4821.11918.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4821contigH-paniculata_contig4821:4967..5371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size406
Cds size405
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930428.4378166-CDS-H-paniculata_contig4821:4966..53711622930428.4378166-CDS-H-paniculata_contig4821:4966..5371Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4821 4967..5371 +
1691481287.7396388-CDS-H-paniculata_contig4821:4966..53711691481287.7396388-CDS-H-paniculata_contig4821:4966..5371Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4821 4967..5371 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4821.11918.1prot_H-paniculata_contig4821.11918.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4821 4967..5371 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4821.11918.1

>prot_H-paniculata_contig4821.11918.1 ID=prot_H-paniculata_contig4821.11918.1|Name=mRNA_H-paniculata_contig4821.11918.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=135bp
AAVVAALVFQNFPEYLDWPRVNTGHHQAVDFATLIRSGSTIPPGDSYNRP
LIPHTTFDRYVRHHGRCCATSYLLSPLIFDVLGLPGDAYARLHRPQPWDD
VVAAYWYLFQHVHATPVHVLVRLANGRLYVAPHVQ
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mRNA from alignment at H-paniculata_contig4821:4967..5371+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4821.11918.1 ID=mRNA_H-paniculata_contig4821.11918.1|Name=mRNA_H-paniculata_contig4821.11918.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=405bp|location=Sequence derived from alignment at H-paniculata_contig4821:4967..5371+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGCAGTGGTGGCTGCCCTGGTCTTCCAAAACTTTCCCGAGTACCTCGA
CTGGCCAAGGGTCAACACAGGCCATCACCAGGCCGTCGATTTCGCCACAC
TCATACGGTCGGGAAGTACTATCCCCCCTGGGGACTCGTACAACCGCCCG
CTGATCCCGCACACCACCTTTGACCGATATGTGCGCCACCATGGCCGCTG
TTGTGCGACATCGTACCTCCTGAGCCCGCTTATTTTTGATGTCCTGGGTC
TGCCGGGTGACGCGTACGCCAGGCTCCACCGACCGCAGCCTTGGGACGAC
GTGGTTGCGGCGTATTGGTACCTATTTCAGCATGTACACGCGACGCCAGT
ACATGTTCTCGTGCGTCTCGCAAATGGAAGGCTCTACGTCGCCCCTCACG
TGCAA
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Coding sequence (CDS) from alignment at H-paniculata_contig4821:4967..5371+

>mRNA_H-paniculata_contig4821.11918.1 ID=mRNA_H-paniculata_contig4821.11918.1|Name=mRNA_H-paniculata_contig4821.11918.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=810bp|location=Sequence derived from alignment at H-paniculata_contig4821:4967..5371+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGCAGTGGTGGCTGCCCTGGTCTTCCAAAACTTTCCCGAGTACCTCGA
CTGGCCAAGGGTCAACACAGGCCATCACCAGGCCGTCGATTTCGCCACAC
TCATACGGTCGGGAAGTACTATCCCCCCTGGGGACTCGTACAACCGCCCG
CTGATCCCGCACACCACCTTTGACCGATATGTGCGCCACCATGGCCGCTG
TTGTGCGACATCGTACCTCCTGAGCCCGCTTATTTTTGATGTCCTGGGTC
TGCCGGGTGACGCGTACGCCAGGCTCCACCGACCGCAGCCTTGGGACGAC
GTGGTTGCGGCGTATTGGTACCTATTTCAGCATGTACACGCGACGCCAGT
ACATGTTCTCGTGCGTCTCGCAAATGGAAGGCTCTACGTCGCCCCTCACG
TGCAAGCGGCAGTGGTGGCTGCCCTGGTCTTCCAAAACTTTCCCGAGTAC
CTCGACTGGCCAAGGGTCAACACAGGCCATCACCAGGCCGTCGATTTCGC
CACACTCATACGGTCGGGAAGTACTATCCCCCCTGGGGACTCGTACAACC
GCCCGCTGATCCCGCACACCACCTTTGACCGATATGTGCGCCACCATGGC
CGCTGTTGTGCGACATCGTACCTCCTGAGCCCGCTTATTTTTGATGTCCT
GGGTCTGCCGGGTGACGCGTACGCCAGGCTCCACCGACCGCAGCCTTGGG
ACGACGTGGTTGCGGCGTATTGGTACCTATTTCAGCATGTACACGCGACG
CCAGTACATGTTCTCGTGCGTCTCGCAAATGGAAGGCTCTACGTCGCCCC
TCACGTGCAA
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