mRNA_H-paniculata_contig4821.11917.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4821.11917.1
Unique NamemRNA_H-paniculata_contig4821.11917.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4821.11917.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4821contigH-paniculata_contig4821:3760..4115 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size356
Cds size342
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930428.3620105-UTR-H-paniculata_contig4821:3759..37731622930428.3620105-UTR-H-paniculata_contig4821:3759..3773Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4821 3760..3773 +
1691481287.7130604-UTR-H-paniculata_contig4821:3759..37731691481287.7130604-UTR-H-paniculata_contig4821:3759..3773Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4821 3760..3773 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930428.3845992-CDS-H-paniculata_contig4821:3773..41151622930428.3845992-CDS-H-paniculata_contig4821:3773..4115Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4821 3774..4115 +
1691481287.7277834-CDS-H-paniculata_contig4821:3773..41151691481287.7277834-CDS-H-paniculata_contig4821:3773..4115Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4821 3774..4115 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4821.11917.1prot_H-paniculata_contig4821.11917.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4821 3774..4115 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4821.11917.1

>prot_H-paniculata_contig4821.11917.1 ID=prot_H-paniculata_contig4821.11917.1|Name=mRNA_H-paniculata_contig4821.11917.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp
MICRIPLGCGYWLHRHCLLGRLEDAIGPGDTRVSCPNRGHASRNRCDIGP
ALQKTLCATNGGDMQPAESSILQSRITPAKAALGRVVATVQGCPVESIGT
HAGGTRVGPRGGSD
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mRNA from alignment at H-paniculata_contig4821:3760..4115+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4821.11917.1 ID=mRNA_H-paniculata_contig4821.11917.1|Name=mRNA_H-paniculata_contig4821.11917.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=356bp|location=Sequence derived from alignment at H-paniculata_contig4821:3760..4115+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGACGAGACAAGATGATCTGCCGCATACCATTGGGGTGCGGTTACTGG
TTGCACCGGCATTGTCTGCTGGGGCGTCTTGAAGACGCGATTGGCCCAGG
AGATACACGCGTGTCGTGCCCCAACCGAGGTCATGCGTCGAGGAATCGAT
GTGACATTGGGCCAGCGCTACAAAAGACCCTGTGCGCTACCAACGGCGGC
GACATGCAACCAGCAGAATCATCGATCTTGCAATCCAGGATCACACCCGC
CAAGGCTGCCCTCGGCCGAGTAGTAGCAACAGTCCAGGGGTGCCCCGTCG
AAAGTATTGGCACTCACGCTGGCGGTACGCGGGTAGGGCCTCGCGGTGGG
AGTGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig4821:3760..4115+

>mRNA_H-paniculata_contig4821.11917.1 ID=mRNA_H-paniculata_contig4821.11917.1|Name=mRNA_H-paniculata_contig4821.11917.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at H-paniculata_contig4821:3760..4115+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCTGCCGCATACCATTGGGGTGCGGTTACTGGTTGCACCGGCATTG
TCTGCTGGGGCGTCTTGAAGACGCGATTGGCCCAGGAGATACACGCGTGT
CGTGCCCCAACCGAGGTCATGCGTCGAGGAATCGATGTGACATTGGGCCA
GCGCTACAAAAGACCCTGTGCGCTACCAACGGCGGCGACATGCAACCAGC
AGAATCATCGATCTTGCAATCCAGGATCACACCCGCCAAGGCTGCCCTCG
GCCGAGTAGTAGCAACAGTCCAGGGGTGCCCCGTCGAAAGTATTGGCACT
CACGCTGGCGGTACGCGGGTAGGGCCTCGCGGTGGGAGTGACATGATCTG
CCGCATACCATTGGGGTGCGGTTACTGGTTGCACCGGCATTGTCTGCTGG
GGCGTCTTGAAGACGCGATTGGCCCAGGAGATACACGCGTGTCGTGCCCC
AACCGAGGTCATGCGTCGAGGAATCGATGTGACATTGGGCCAGCGCTACA
AAAGACCCTGTGCGCTACCAACGGCGGCGACATGCAACCAGCAGAATCAT
CGATCTTGCAATCCAGGATCACACCCGCCAAGGCTGCCCTCGGCCGAGTA
GTAGCAACAGTCCAGGGGTGCCCCGTCGAAAGTATTGGCACTCACGCTGG
CGGTACGCGGGTAGGGCCTCGCGGTGGGAGTGAC
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