mRNA_H-paniculata_contig4813.11906.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4813.11906.1
Unique NamemRNA_H-paniculata_contig4813.11906.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4813.11906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4813contigH-paniculata_contig4813:8388..10626 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size219
Cds size198
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4813.11906.1prot_H-paniculata_contig4813.11906.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4813 8409..10626 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930426.4755085-UTR-H-paniculata_contig4813:8387..84081622930426.4755085-UTR-H-paniculata_contig4813:8387..8408Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4813 8388..8408 +
1691481286.8388848-UTR-H-paniculata_contig4813:8387..84081691481286.8388848-UTR-H-paniculata_contig4813:8387..8408Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4813 8388..8408 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930426.4916885-CDS-H-paniculata_contig4813:8408..84271622930426.4916885-CDS-H-paniculata_contig4813:8408..8427Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4813 8409..8427 +
1691481286.852032-CDS-H-paniculata_contig4813:8408..84271691481286.852032-CDS-H-paniculata_contig4813:8408..8427Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4813 8409..8427 +
1622930426.5068748-CDS-H-paniculata_contig4813:10447..106261622930426.5068748-CDS-H-paniculata_contig4813:10447..10626Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4813 10448..10626 +
1691481286.861753-CDS-H-paniculata_contig4813:10447..106261691481286.861753-CDS-H-paniculata_contig4813:10447..10626Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4813 10448..10626 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4813.11906.1

>prot_H-paniculata_contig4813.11906.1 ID=prot_H-paniculata_contig4813.11906.1|Name=mRNA_H-paniculata_contig4813.11906.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
MGLSTQETQTESPLTANMDILQHVLPYASKASHFFVASVCQSWRHAWFLA
DRSYEISIYGVAMKPA
back to top

mRNA from alignment at H-paniculata_contig4813:8388..10626+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4813.11906.1 ID=mRNA_H-paniculata_contig4813.11906.1|Name=mRNA_H-paniculata_contig4813.11906.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2239bp|location=Sequence derived from alignment at H-paniculata_contig4813:8388..10626+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGATTTTACGAAATACTGGAGATGGGGTTGTCCACGCAAGGTGAGCATAT
AATGAAAGGGAGACAATATTGCTGAAGCTGAGACAGATGACATGGTCCAT
GCGGTGAGCCGTCATTTCGTCTCGCTTCTTGACTGCAGTACAGCATCATG
ATATATCGCGACTTCTCTTGGTAGCAGTGCTTGTTCAATATATCAAAGTT
GCGGCAGGCACGCGACTTCAACCGACCATGTCCAATTGTATTGGGTACTT
ACCAGCAACATACACACGACACACGACCCATACAACCATGCGCATGACGA
AGAGTTTTGTATGGACAACGAATACAATATTGTGGGTATAGAATACATTA
GGGGGTCTGACATGGTCCACGTTTTCCCCAGGCATTTCAAAAATTGGTGG
TCCGAACTTGGTCCAGAATCCCATCAAGCCCCATAGAATCCGATATAGCG
ACTATGGGATTTTCACGGCAATCGACCATTTGATCTGCCGAAGCTCCACA
AAAAATGGGGGGGCATTTGATGCAACTCTAGCTTTTTCCGTGTTATGGTG
AACGCATGGGTATCCTTGCAGGACTGTTGATGGTGTCGAAATAATTTTCG
AGAAAAAGACTATTTGAGATTCACATCGAATTCAAGCAATCCTAACTTGC
TCTCTAACCCAAACACTGAAAACCGTACTGGGCAGCAAGCCAGTGCATAC
ATAAATTTAGAGCGCCTGTTGCCTACGTCCCCCTAGCTGAGTGTGAGATC
TATCATGACGGAAGCGGGGTCATTCAAGCGGCTAATGAATGACTCAAAAC
GAAGACCAGGCCCATGGTACCTGCTTGCACTACTCAGTGCTTAAGTTGAA
TATATTTGTGGGGAGGATGAGTTCACAGCTCACAAATTTCTACCCTGTGC
AACTCCCAGCAAACTTATGTTATTCTCTATAGTGTCACCAGAAATTTAAC
AGATAGACACTAGTATGAAGACATCAAGTGAGCGAAATCCTGCAGTAGAT
GAGAAAAATGTACCATGTGTTTGAAATAGCGCACTTAAGTCATCTCTTAC
GGGGTCGGATTTTTCCAGTCGAAAACAGATTTTCGAATTTCTCGACTCCG
AGAAATCCGATTTTCCATCTTATGCTAGTGGATTTCTTGGGAATCTGAGT
TGAGAAATCCAAGAGGGGACGTACAGCCGGTCCCATTCCCAGATTTCTGG
CAGAAATCAGAGTTGCCCTAGCGTATCGAATTTCTTGGAGTTCCATCATA
TGAAGGCGTTCATGTTTTCCATTCAACGTTTGAAATGTCACAGCCTGTAG
CAATACACAACCGCGAGGATACAGACAAGCCAAGGTGTGTGACCCCCGCC
GCCATATGGAACATGTGGGACTGCTAGCCCGGGGGTTTCCTCCACCCAGC
GGAGGAAGCTGTGAACCGCGATCTTACCGTACGATTCAACCGCAGCCTTG
TTCCTGTTAGCCTGAGACATGGTCCCACCGTTCTGCTTCACACCAGTATA
AGCGTACCACAGTGGTACACTCTGCAGTATCCTCCCCTGTGCCTTGCTGA
CAGCCGATTTGATCCCCTGAGCCTTCATCTCACTCCATACCCATTCCATG
CATGGGTTCGTCGCAAGATGCATCGCAGTTGACGGTACATTCATGACCGT
GTGATTTTTAAATGGTGATGTGAGTGTGTGCTGAGGGTGTGCTGGAGGGT
TACATGTACGAGGGTGATGTCTTGGGTGGTGCGCTCGAGGACCCGATGTT
GGAGGGTGTATTTGAATTTTGAATTGTGCTGCTTCCACTACGACGCCTGC
AAACCTCCAATAAAAACCACCTTCGGGAAATCCGACCCCTTGACAAACGC
GAATCGAATATTGAAGATCAAATTTTTGCACCCTTCGAGAAATCGGAAAG
TAGAGAAATTCGACGGGAAAAATCCGACCCCGTAAGAGATGGCCTTAGGT
GCGTAAAACGTGATGAAATCTGAGCTAACTCCTCAGACCACGAGAACATA
TTTCACTACTAAACAACCGGAATCCTCCACCTCCTCGTTTTTTCGCGCTA
AAACAACCAGAAACCCAGACGGAGAGCCCCCTTACTGCAAATATGGATAT
TCTCCAGCACGTGCTGCCTTACGCCTCAAAGGCTAGCCATTTCTTTGTCG
CGAGCGTGTGCCAAAGCTGGAGGCACGCATGGTTTCTGGCAGATCGATCC
TATGAAATTAGCATTTACGGGGTGGCGATGAAACCGGCG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4813:8388..10626+

>mRNA_H-paniculata_contig4813.11906.1 ID=mRNA_H-paniculata_contig4813.11906.1|Name=mRNA_H-paniculata_contig4813.11906.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig4813:8388..10626+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGTTGTCCACGCAAGATGGGGTTGTCCACGCAAGAAACCCAGACGG
AGAGCCCCCTTACTGCAAATATGGATATTCTCCAGCACGTGCTGCCTTAC
GCCTCAAAGGCTAGCCATTTCTTTGTCGCGAGCGTGTGCCAAAGCTGGAG
GCACGCATGGTTTCTGGCAGATCGATCCTATGAAATTAGCATTTACGGGG
TGGCGATGAAACCGGCGAAACCCAGACGGAGAGCCCCCTTACTGCAAATA
TGGATATTCTCCAGCACGTGCTGCCTTACGCCTCAAAGGCTAGCCATTTC
TTTGTCGCGAGCGTGTGCCAAAGCTGGAGGCACGCATGGTTTCTGGCAGA
TCGATCCTATGAAATTAGCATTTACGGGGTGGCGATGAAACCGGCG
back to top