mRNA_H-paniculata_contig4806.11891.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig4806.11891.1 vs. uniprot
Match: D7G372_ECTSI (Sodium/hydrogen exchanger family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G372_ECTSI) HSP 1 Score: 788 bits (2036), Expect = 6.190e-267 Identity = 429/622 (68.97%), Postives = 490/622 (78.78%), Query Frame = 1
Query: 1 AAEHLEQLAEARLRFVAAVKANYQDNFRKGWLSDSGLRVLQGNADVQLDAGHLPLQEWTRLRESFTIPDYQLNMASALRYLPFVGRVVGGWIFKKLAFVFELASNFIAAHEDIAILELLPEGDAADQLARENLKQLDDASATLGQQLPAFPEVARSLKTQVAARFLLAKHRHFVEELYLDGFINEKERETILRVNTEFKIKLDDHPYAEHLPPKAIMLAKVPFLKVLNDEQMSAIVNDDEFCQEEFHGSNVVLCKQGEQVKFSGHNRGRSGWYYIVRGSVQMVTASKSKNKTTAVGDGNSASGNDAA-VGVSGPDSGAGGE*TEKGS-LKVREHPLHAGAVFGMTDMMLGLSFRATYTTTSFVHLFFFDRRAFLKECARNEDLNRALWRTVGVSVLRKFYGFHRMRLQDLQKMVQNSEFVDMGEDGVGEDMNKIEYKVEAMRAKAASRVESKQQSGSLDGMISVGSGVGGAVAMASKVTSSPGDDSDDDDGRIHVHKLCPDERGVSLAKTLSNMGLYNMGS--IPDATLAAAASALTPHSMAAKKASNSSSATQTLKVVDVEPRRLVLLVKGQLLPRPTTNSLPGVEMHTAPCLLTDVSGRLVFTKDTKMFLIPVGVVERSR 1854
A E EQLAEARLRFV AVKANYQDNFRKGWLSDSGLRVL GNADVQLD + L+EW RLRESFTIP+YQLNMASALR+LP +G++VGGWIFKKLAFVFELASNFIAAHEDI ILELLPEGDAA+QLARENLKQLDDAS TLG QLPAFPEVA ARFLLAKHR FV E++LDG +NEKE ET L VNTEFKIKLDDHPYAEHLPP+A+MLAKVPFLK L+++Q+ +VNDD FCQEE HGSNVVL +Q E+VK SGHN+G +GWYYIVRGSVQMVT S+ ++ ++ + A +G G + AGG E GS +K++EHPLHAGAVFGMTD MLGL FRATYT+TSFVHLFFFDR +FL E NEDLNR+LWRTVGVSVLRKFYGFH +RLQ+LQKMVQN+EFVD+ ++GVG + EYKVEA+RAKAASR + SL + S G A +V +S DS DDDGRIH+H+L +ERG +AKTLSNMGLYNM + D +LA AA+ LTPHS S+ QTLKVVDVEP+RLVLLVKGQLLPRP T+S P VEMH APCLLTDV GRLVF+KDTKMFLIPV VVE+S+
Sbjct: 823 AKEQQEQLAEARLRFVGAVKANYQDNFRKGWLSDSGLRVLMGNADVQLDDSYAALEEWARLRESFTIPEYQLNMASALRHLPIIGQIVGGWIFKKLAFVFELASNFIAAHEDIDILELLPEGDAANQLARENLKQLDDASGTLGHQLPAFPEVA--------ARFLLAKHREFVHEMFLDGLLNEKEAETTLHVNTEFKIKLDDHPYAEHLPPRAVMLAKVPFLKSLSEDQVVQVVNDDRFCQEELHGSNVVLLRQSERVKHSGHNKGTTGWYYIVRGSVQMVTVSQERDSSSEAPHASGAGRKGGLFMGGDGHTTAAGGFEGEGGSSVKIKEHPLHAGAVFGMTDSMLGLPFRATYTSTSFVHLFFFDRTSFLFEALANEDLNRSLWRTVGVSVLRKFYGFHCLRLQELQKMVQNAEFVDVMQEGVGVVTTQNEYKVEALRAKAASRAGLSHSNSSLSELNSAAEGA------APEVFNSAFQDSTDDDGRIHIHQLKENERG-GIAKTLSNMGLYNMDMDRMTDESLAEAATLLTPHS----------SSNQTLKVVDVEPKRLVLLVKGQLLPRPPTDSHPAVEMHMAPCLLTDVCGRLVFSKDTKMFLIPVSVVEKSK 1419
BLAST of mRNA_H-paniculata_contig4806.11891.1 vs. uniprot
Match: A0A835Z8G2_9STRA (Sodium/hydrogen exchanger family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8G2_9STRA) HSP 1 Score: 502 bits (1293), Expect = 3.670e-158 Identity = 296/637 (46.47%), Postives = 376/637 (59.03%), Query Frame = 1
Query: 13 LEQLAEARLRFVAAVKANYQDNFRKGWLSDSGLRVLQGNADVQLDAGHL--PLQEWTRLRESFTIPDYQLNMASALRYLPFVGRVVGGWIFKKLAFVFELASNFIAAHEDIAILELLPEGDAADQLARENLKQLDDASATLGQQLPAFPEVARSLKTQVAARFLLAKHRHFVEELYLDGFINEKERETILRVNTEFKIKLDDHPYAEHLPPKAIMLAKVPFLKVLNDEQMSAIVNDDEFCQEEFHGSNVVLCKQGEQVKFSGHNR--GRSGWYYIVRGSVQMVTASKSKNKTTAVGDGNSASGNDAAVGVSGPDSGAGGE*TEKGSLKVREHPLHAGAVFGMTDMMLGLSFRATYTTTSFVHLFFFDRRAFLKECARNEDLNRALWRTVGVSVLRKFYGFHRMRLQDLQKMVQNSEFVDMGEDGVGEDMNKIEYKVEAMRAKAASRVESKQQSGSLDGMISVGSGVGGAVAMASKVTSSPGDDSDDDDGRIHVHKLCPDERGVSLAKTLSNMGLYN-------MGSIPDATLAAAAS------------ALTPHSMAAKKASNSSSATQTLKVVDVEPRRLVLLVKGQLLPRPTTNSLPGVEMHTAPCLLTDVSGRLVFTKDTKMFLIPVGVVERSR 1854
++QLAEARLRF+ AVKANY N++ GWL+ SGLRVLQ NAD QLD G+ PL EW RLR SFT+PDYQ+ +A+ALR+ PF+G++VGGW+F+KLAFVF LA NFI AHE I + +LLPEG AA +LA QV+ARF+L +HR VEEL GFINE+E E +L N L DHPYA+HLPP+ ++L+KVPFL+ LNDE + IV D+ C E+FHGSNVVL + G Q G N+ G +GWYYIVRG+V M++ + K + R+ LHAGAVFGMTD MLG FR YTT SFVH+F+FD+ L E AR +DLNR+LWRTVGV+VLRKF GF+RMRL +L K+V +SEFVD+ GVGE+ +++ +VE +RA+ + S G G IS +G G A+ + DDG IH+ K+ D G SL + L MGLY G A +A+ S A +P + KA+ A +LK+VDV+ VLLV GQLLPRP T++ P VE APCLLTDV GRLV T TK+FLIPV + R R
Sbjct: 911 MQQLAEARLRFITAVKANYVINYKSGWLTTSGLRVLQDNADEQLDKGNANEPLGEWDRLRVSFTLPDYQVTVANALRHTPFLGQIVGGWVFEKLAFVFMLAKNFILAHEGIDMTDLLPEGAAAQRLA------------------------------QVSARFMLHRHREVVEELMRGGFINEREGEALLHRNAVSHTLLHDHPYADHLPPRTVLLSKVPFLRQLNDEDLKRIVEDESCCSEQFHGSNVVLIRNGAQTVAQGPNKSSGAAGWYYIVRGTVHMISENPVKGR--------------------------------------RQQVLHAGAVFGMTDQMLGRPFRGAYTTASFVHVFYFDKDRLLAEAARCDDLNRSLWRTVGVTVLRKFVGFNRMRLNELHKLVYSSEFVDLSRAGVGEETSEVALRVEQIRARMTA---SSSVGGMRHGSISGSTGDAGTPTSAAAAAA--------DDGAIHIKKMSRDPSGTSLKQALRQMGLYEGDFDDYLQGQQRHAHVASGGSVAGSGSSGGIAQARSPPMLQGPKAA----AHTSLKIVDVDASYYVLLVTGQLLPRPATDTAPAVEAQDAPCLLTDVEGRLVVTTATKLFLIPVSAISRVR 1464
BLAST of mRNA_H-paniculata_contig4806.11891.1 vs. uniprot
Match: A0A836CH43_9STRA (Sodium/hydrogen exchanger family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH43_9STRA) HSP 1 Score: 292 bits (748), Expect = 4.460e-82 Identity = 176/406 (43.35%), Postives = 244/406 (60.10%), Query Frame = 1
Query: 22 LAEARLRFVAAVKANYQDNFRKGWLSDSGLRVLQGNADVQLDAGHLPLQEWTRLRESFTIPDYQLNMASALRYLPFVGRVVGGWIFKKLAFVFELASNFIAAHEDIAILELLPEGDAADQLARENLKQLDDASATLGQQLPAFPEVARSLKTQVAARFLLAKHRHFVEELYLDGFINEKERETILRVNTEFKIKLDDHPYAEHLPPKAIMLAKVPFLKVLNDEQMSAIVNDDEFCQEEFHGSNVVLCKQGEQVKFSGHNRGRSGWYYIVRGSVQMVTASKSKNKTTAVGDGNSASGNDAA---VGVSGPDSGAGGE*TEKGSLKVREHPLHAGAVFGMTDMMLGLSFRATYTTTSFVHLFFFDRRAFLKECARNEDLNRALWRTVGVSVLRKFYGFHRMRLQDLQK 1230
+AEAR+RF++AVKANYQ+ +GWLS SG RVL+ N D QL+ L+EW+ L SF +P +L + LR LP R+V +I+ +LAF+FELASNFIAAHED+ IL+++ EG A QLA E KQL +A TL QLP FPE+ARSLKTQVAAR++L +HR VEE Y G IN++E +L N ++KLD HP+ +H+P ++ +L VPFL+ L D ++ + EEF GS++ L ++ +GH R SG V S M + + N T + G S + ++G G GE + + +E LHAG VFG+ D +L + + +TYTT SF HLFFFD+ L +LNR LW ++ VSV+R GF RM L+ Q+
Sbjct: 873 MAEARVRFLSAVKANYQERLHQGWLSASGARVLRENIDAQLENTEASLREWSVLARSFAMPAARL---APLRRLPLAKRLVDPFIYGRLAFIFELASNFIAAHEDVDILQIIKEGPVAYQLAFEKTKQLREARDTLVAQLPVFPELARSLKTQVAARYILVQHRGMVEESYRHGHINDREYARLLHSNNVSRVKLDYHPHTDHIPDRSQLLKGVPFLRFLTDADRETVIRNSAAVVEEFRGSHITLMRE-RSADVTGHKR--SGCVRQVTKSFVMGSG-RHANSTGSPYLGPLVSSEEVLPINCVINGDTIGRHGEVPQ---MVRKERLLHAGTVFGLDDQLLEIPYHSTYTTASFAHLFFFDKAQILAMAEDMPELNRGLWWSLAVSVMRHHRGFRRMTLKVCQR 1268
BLAST of mRNA_H-paniculata_contig4806.11891.1 vs. uniprot
Match: A0A6H5L6F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6F4_9PHAE) HSP 1 Score: 258 bits (658), Expect = 4.400e-72 Identity = 130/278 (46.76%), Postives = 192/278 (69.06%), Query Frame = 1
Query: 22 LAEARLRFVAAVKANYQDNFRKGWLSDSGLRVLQGNADVQLDAGHLPLQEWTRLRESFTIPDYQLNMASALRYLPFVGRVVGGWIFKKLAFVFELASNFIAAHEDIAILELLPEGDAADQLARENLKQLDDASATLGQQLPAFPEVARSLKTQVAARFLLAKHRHFVEELYLDGFINEKERETILRVNTEFKIKLDDHPYAEHLPPKAIMLAKVPFLKVLNDEQMSAIVNDDEFCQEEFHGSNVVLCKQGEQVKFSGHNRGRSGWYYIVRGSVQMVTA 855
++EAR+RF+ AVKA++ + +GWLS GLRVL+ N D QLD L + +W+ L +F +P + LR +P VG +V +++++L F+FELASNFI+AHED+ ILELL EG A QLA E +QL DA +TL QQLP FPE+ARSLKT+VAA+++L +HR V EL+ G IN++E E ++ N ++KL+ HP A+ +P + +L VPFL+ L DE+ + I+N+++ CQEEF+GSNVVL ++ F+ R R GW+ +VRG+V+ ++
Sbjct: 565 MSEARVRFLTAVKAHFTARYHQGWLSSMGLRVLKENMDSQLDHDELEMDQWSLLSTAFRLP----TSMAILRKIPLVGNLVESYMYRRLMFIFELASNFISAHEDVDILELLHEGPVAYQLALEKNRQLQDARSTLSQQLPVFPELARSLKTRVAAKYMLVQHREVVHELFHHGHINDRESEGLIAENNAARVKLEYHPAADQIPDRFTLLKNVPFLRFLTDEEKAEIINNEKACQEEFYGSNVVL--MNAKMSFARGAR-RQGWFSVVRGAVRQASS 835
BLAST of mRNA_H-paniculata_contig4806.11891.1 vs. uniprot
Match: D7FHU8_ECTSI (Cyclic nucleotide-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHU8_ECTSI) HSP 1 Score: 215 bits (547), Expect = 9.540e-62 Identity = 119/277 (42.96%), Postives = 174/277 (62.82%), Query Frame = 1
Query: 274 IFKKLAFVFELASNFIAAHEDIAILELLPEGDAADQLARENLKQLDDASATLGQQLPAFPEVARSLKTQVAARFLLAKHRHFVEELYLDGFINEKERETILRVNTEFKIKLDDHPYAEHLPPKAIMLAKVPFLKVLNDEQMSAIVNDDEFCQEEFHGSNVVLCKQGEQVKFSGHNRGRSGWYYIVRGSVQMVTASKSKNKTTAVGDGNSASGNDAAVGVSGPDSGAGGE*TEKGSLKVREHPLHAGAVFGMTDMMLGLSFRATYTTTSFVHLFFFDR 1104
++++L F+FELASNFI+AHED+ ILELL EG A QLA E +QL DA +TL QQLP FPE+ARSLKT+VAA+++L +H V EL+ G IN++E E ++ N ++KL+ HP A+ +P + +L VPFL+ L DE+ + I+N+++ CQEEF+GSNVVL ++ F+ R R GW+ +VRG+V+ T + T GG T++ +E ++AG V G+ + ++ + +R TYTT SFVHLFFFD+
Sbjct: 1 MYRRLMFIFELASNFISAHEDVDILELLHEGPVAYQLALEKNRQLQDARSTLSQQLPVFPELARSLKTRVAAKYMLVQHPEVVHELFHHGHINDRESEGLIAENNAARVKLEYHPAADQIPDRFTLLKNVPFLRFLTDEEKAEIINNEKACQEEFYGSNVVL--MNAKMSFARGAR-RQGWFNVVRGAVRQNTEGMLGHTTM------------------------GG--TQRLRRLAKERLVNAGTVVGLDEQLMQVPYRCTYTTASFVHLFFFDK 248
BLAST of mRNA_H-paniculata_contig4806.11891.1 vs. uniprot
Match: A0A7S2WTL1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WTL1_9STRA) HSP 1 Score: 173 bits (438), Expect = 4.180e-44 Identity = 104/289 (35.99%), Postives = 151/289 (52.25%), Query Frame = 1
Query: 22 LAEARLRFVAAVKANYQDNFRKGWLSDSGLRVLQGNADVQLDAGHLPLQEWTRLRESFTIPDYQLNMASALRYLPFVGRVVGGWIFKKLAFVFELASNFIAAHEDIAILELLPEGDAADQLARENLKQLDDASATLGQQLPAFPEVARSLKTQVAARFLLAKHRHFVEELYLDGFINEKERETILRVNTEFKIKLDDHPYAEHLPPKAIMLAKVPFLKVLNDEQMSAIVNDDEFCQEEFHGSNVVLCKQGEQ------VKFSGHNRGRSGWYYIVRGSVQMVTASKSKN 870
+ +AR RF+ AV+A YQ N G +S LR L+ +AD LD L +W L + +A +P +G+V+ I+++LAF+ ELA+ F+ AH+ I I ELL +G+ AD+L EN KQ+ L QQLP FPE+A +LKTQ+AAR LL H ++ L G I E+E E + E + KL HP E LP + ML+K F++ + + + I + C E F + L + GE K N R+GW+ +VRG V+ K N
Sbjct: 41 MPKARARFITAVRAQYQANHHVGRMSAHALRTLRESADNMLDNPDKELHDWDFLEPKLQMSPKLQQLARRFAKVPLLGKVMFNLIYEQLAFMQELAAEFVHAHQAIDIYELLDKGELADRLVSENYKQMKKVHDLLQQQLPVFPEIAHALKTQMAARQLLNFHARVIDHLVEHGNITEREYELFNHKSDEMQSKLRAHPLTEELPKRFEMLSKADFMRNVPEVDVQRIADSSSICNEFFVEPSCTLFRPGETHVHHPTAKRFLSNENRNGWFLVVRGMVRKRIPKKRSN 329
BLAST of mRNA_H-paniculata_contig4806.11891.1 vs. uniprot
Match: F0Y140_AURAN (Na_H_Exchanger domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y140_AURAN) HSP 1 Score: 144 bits (362), Expect = 1.900e-32 Identity = 92/227 (40.53%), Postives = 122/227 (53.74%), Query Frame = 1
Query: 16 EQLAEARLRFVAAVKANYQDNFRKGWLSDSGLRVLQGNADVQLDAGHLPLQEWTRLRESFTIPDYQLNMASALR-YLPF--VGRVVGGWIFKKLAFVFELASNFIAAHEDI----AILELLPEGDAADQLARENLKQLDDASATLGQQLPAFPEVARSLKTQVAARFLLAKHRHFVEELYLDGFINEKERETILRVNTEFKIKLDDHPYAEHLPPKAIMLAKVPFLK 675
E LAE+R R + A+KANY F G L+ GLRVL N D+Q D PL EW RL P +L+ L Y+P V V G IF+++AFVFE+A NFI AHED+ A E++ G + L E K A AT+ + + FPE A ++KTQVAA F+L + ++E G I KE R +IKL HPY E +PP ++ VPFL+
Sbjct: 493 EMLAESRARCLWAIKANYHVAFTHGRLTPHGLRVLVENVDMQTDDESRPLDEWERLEAHDLWPKARLSRIQYLNTYIPSERVRESVQGVIFRRMAFVFEVAYNFIHAHEDVEHALAAEEIVDAGPVQEALVEEVAKMQAMAKATIAEYIDVFPESANAIKTQVAASFVLVRQHELMKESREHGHITAKELGECERHINAARIKLSQHPYTEQMPPIKTLVRDVPFLR 719
BLAST of mRNA_H-paniculata_contig4806.11891.1 vs. uniprot
Match: W7TMP7_9STRA (Cyclic nucleotide-binding protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TMP7_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 1.580e-13 Identity = 52/144 (36.11%), Postives = 78/144 (54.17%), Query Frame = 1
Query: 157 LPLQEWTRLRESFTIPDYQLNMASALRYLPFVGRVVGGWIFKKLAFVFELASNFIAAHEDI--AILELLPE-GDAADQLARENLKQLDDASATLGQQLPAFPEVARSLKTQVAARFLLAKHRHFVEELYLDGFINEKERETILR 579
+PL EW L P + + LR LP VGR V + KKLAF FELA FI +H + + EL + G QL +E +++ A A L + +P FP++ S+KT++AAR++L K R +E G + ++E E +R
Sbjct: 5 VPLNEWAGLEHHILFPLRAVRAQARLRRLPLVGRAVQYLLGKKLAFFFELAVVFIQSHSNAHKKLNELFGKNGPVTRQLEKEVEEEVGKAKAALEEFVPVFPDIINSVKTEMAARYMLNKCRSMLEAAMESGSLEKREFEDAIR 148 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4806.11891.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4806.11891.1 >prot_H-paniculata_contig4806.11891.1 ID=prot_H-paniculata_contig4806.11891.1|Name=mRNA_H-paniculata_contig4806.11891.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=278bp MTDMMLGLSFRATYTTTSFVHLFFFDRRAFLKECARNEDLNRALWRTVGVback to top mRNA from alignment at H-paniculata_contig4806:1769..14984- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4806.11891.1 ID=mRNA_H-paniculata_contig4806.11891.1|Name=mRNA_H-paniculata_contig4806.11891.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=13216bp|location=Sequence derived from alignment at H-paniculata_contig4806:1769..14984- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4806:1769..14984- >mRNA_H-paniculata_contig4806.11891.1 ID=mRNA_H-paniculata_contig4806.11891.1|Name=mRNA_H-paniculata_contig4806.11891.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1668bp|location=Sequence derived from alignment at H-paniculata_contig4806:1769..14984- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |